Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_16175

Experiment: ICP3_phage_41.1_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_16160 and CSW01_16165 overlap by 89 nucleotidesCSW01_16165 and CSW01_16170 are separated by 178 nucleotidesCSW01_16170 and CSW01_16175 are separated by 161 nucleotidesCSW01_16175 and CSW01_16180 are separated by 150 nucleotidesCSW01_16180 and CSW01_16185 overlap by 1 nucleotidesCSW01_16185 and CSW01_16190 are separated by 118 nucleotidesCSW01_16190 and CSW01_16195 overlap by 86 nucleotides CSW01_16160: CSW01_16160 - hypothetical protein, at 376,985 to 377,170 _16160 CSW01_16165: CSW01_16165 - DUF645 domain-containing protein, at 377,082 to 377,264 _16165 CSW01_16170: CSW01_16170 - hypothetical protein, at 377,443 to 377,790 _16170 CSW01_16175: CSW01_16175 - hypothetical protein, at 377,952 to 378,410 _16175 CSW01_16180: CSW01_16180 - hypothetical protein, at 378,561 to 378,923 _16180 CSW01_16185: CSW01_16185 - DUF3265 domain-containing protein, at 378,923 to 379,009 _16185 CSW01_16190: CSW01_16190 - hypothetical protein, at 379,128 to 379,311 _16190 CSW01_16195: CSW01_16195 - DUF645 domain-containing protein, at 379,226 to 379,405 _16195 Position (kb) 377 378 379Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 377.084 kb on - strandat 377.085 kb on - strandat 377.193 kb on - strand, within CSW01_16165at 378.042 kb on + strand, within CSW01_16175at 378.078 kb on + strand, within CSW01_16175at 378.109 kb on - strand, within CSW01_16175at 378.113 kb on + strand, within CSW01_16175at 378.113 kb on + strand, within CSW01_16175at 378.113 kb on + strand, within CSW01_16175at 378.113 kb on + strand, within CSW01_16175at 378.113 kb on + strand, within CSW01_16175at 378.120 kb on + strand, within CSW01_16175at 378.130 kb on + strand, within CSW01_16175at 378.182 kb on + strand, within CSW01_16175at 378.190 kb on - strand, within CSW01_16175at 378.190 kb on - strand, within CSW01_16175at 378.190 kb on - strand, within CSW01_16175at 378.190 kb on - strand, within CSW01_16175at 378.257 kb on - strand, within CSW01_16175at 378.303 kb on - strand, within CSW01_16175at 378.587 kb on + strandat 378.587 kb on + strandat 378.590 kb on - strandat 378.678 kb on + strand, within CSW01_16180at 378.678 kb on + strand, within CSW01_16180at 378.686 kb on - strand, within CSW01_16180at 378.686 kb on - strand, within CSW01_16180at 378.686 kb on - strand, within CSW01_16180at 378.698 kb on + strand, within CSW01_16180at 378.706 kb on - strand, within CSW01_16180at 378.742 kb on + strand, within CSW01_16180at 378.742 kb on + strand, within CSW01_16180at 378.742 kb on + strand, within CSW01_16180at 378.767 kb on + strand, within CSW01_16180at 378.767 kb on + strand, within CSW01_16180at 378.775 kb on - strand, within CSW01_16180at 378.775 kb on - strand, within CSW01_16180at 378.775 kb on - strand, within CSW01_16180at 378.783 kb on + strand, within CSW01_16180at 378.783 kb on + strand, within CSW01_16180at 378.783 kb on + strand, within CSW01_16180at 378.783 kb on + strand, within CSW01_16180at 378.791 kb on - strand, within CSW01_16180at 378.791 kb on - strand, within CSW01_16180at 378.851 kb on + strand, within CSW01_16180at 378.859 kb on - strand, within CSW01_16180at 378.859 kb on - strand, within CSW01_16180at 378.859 kb on - strand, within CSW01_16180at 378.859 kb on - strand, within CSW01_16180at 378.939 kb on + strand, within CSW01_16185at 378.991 kb on + strand, within CSW01_16185at 378.998 kb on + strand, within CSW01_16185at 379.184 kb on + strand, within CSW01_16190at 379.290 kb on - strandat 379.363 kb on + strand, within CSW01_16195at 379.389 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep1
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377,084 - +1.8
377,085 - -2.8
377,193 - CSW01_16165 0.61 +1.8
378,042 + CSW01_16175 0.20 -3.0
378,078 + CSW01_16175 0.27 -3.3
378,109 - CSW01_16175 0.34 -0.1
378,113 + CSW01_16175 0.35 +0.5
378,113 + CSW01_16175 0.35 +0.6
378,113 + CSW01_16175 0.35 -2.6
378,113 + CSW01_16175 0.35 -3.1
378,113 + CSW01_16175 0.35 +0.3
378,120 + CSW01_16175 0.37 -0.6
378,130 + CSW01_16175 0.39 +0.9
378,182 + CSW01_16175 0.50 -0.6
378,190 - CSW01_16175 0.52 -0.3
378,190 - CSW01_16175 0.52 +0.4
378,190 - CSW01_16175 0.52 -1.1
378,190 - CSW01_16175 0.52 -0.5
378,257 - CSW01_16175 0.66 +0.6
378,303 - CSW01_16175 0.76 -2.9
378,587 + +0.2
378,587 + -0.6
378,590 - -0.6
378,678 + CSW01_16180 0.32 -2.2
378,678 + CSW01_16180 0.32 -3.4
378,686 - CSW01_16180 0.34 -0.2
378,686 - CSW01_16180 0.34 +0.5
378,686 - CSW01_16180 0.34 -1.2
378,698 + CSW01_16180 0.38 -0.5
378,706 - CSW01_16180 0.40 -0.7
378,742 + CSW01_16180 0.50 +0.2
378,742 + CSW01_16180 0.50 -0.5
378,742 + CSW01_16180 0.50 -0.5
378,767 + CSW01_16180 0.57 +1.2
378,767 + CSW01_16180 0.57 +0.1
378,775 - CSW01_16180 0.59 -1.1
378,775 - CSW01_16180 0.59 -1.1
378,775 - CSW01_16180 0.59 +0.3
378,783 + CSW01_16180 0.61 -0.0
378,783 + CSW01_16180 0.61 +0.4
378,783 + CSW01_16180 0.61 -3.1
378,783 + CSW01_16180 0.61 -2.7
378,791 - CSW01_16180 0.63 +1.2
378,791 - CSW01_16180 0.63 +0.0
378,851 + CSW01_16180 0.80 -0.5
378,859 - CSW01_16180 0.82 -1.0
378,859 - CSW01_16180 0.82 +0.3
378,859 - CSW01_16180 0.82 +0.2
378,859 - CSW01_16180 0.82 +0.0
378,939 + CSW01_16185 0.18 +0.7
378,991 + CSW01_16185 0.78 +1.2
378,998 + CSW01_16185 0.86 +1.2
379,184 + CSW01_16190 0.30 +0.4
379,290 - -0.5
379,363 + CSW01_16195 0.76 -0.2
379,389 - -2.4

Or see this region's nucleotide sequence