Experiment: ICP3_phage_41.1_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_16160 and CSW01_16165 overlap by 89 nucleotides CSW01_16165 and CSW01_16170 are separated by 178 nucleotides CSW01_16170 and CSW01_16175 are separated by 161 nucleotides CSW01_16175 and CSW01_16180 are separated by 150 nucleotides CSW01_16180 and CSW01_16185 overlap by 1 nucleotides CSW01_16185 and CSW01_16190 are separated by 118 nucleotides CSW01_16190 and CSW01_16195 overlap by 86 nucleotides
CSW01_16160: CSW01_16160 - hypothetical protein, at 376,985 to 377,170
_16160
CSW01_16165: CSW01_16165 - DUF645 domain-containing protein, at 377,082 to 377,264
_16165
CSW01_16170: CSW01_16170 - hypothetical protein, at 377,443 to 377,790
_16170
CSW01_16175: CSW01_16175 - hypothetical protein, at 377,952 to 378,410
_16175
CSW01_16180: CSW01_16180 - hypothetical protein, at 378,561 to 378,923
_16180
CSW01_16185: CSW01_16185 - DUF3265 domain-containing protein, at 378,923 to 379,009
_16185
CSW01_16190: CSW01_16190 - hypothetical protein, at 379,128 to 379,311
_16190
CSW01_16195: CSW01_16195 - DUF645 domain-containing protein, at 379,226 to 379,405
_16195
Position (kb)
377
378
379 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 377.084 kb on - strand at 377.085 kb on - strand at 377.193 kb on - strand, within CSW01_16165 at 378.042 kb on + strand, within CSW01_16175 at 378.078 kb on + strand, within CSW01_16175 at 378.109 kb on - strand, within CSW01_16175 at 378.113 kb on + strand, within CSW01_16175 at 378.113 kb on + strand, within CSW01_16175 at 378.113 kb on + strand, within CSW01_16175 at 378.113 kb on + strand, within CSW01_16175 at 378.113 kb on + strand, within CSW01_16175 at 378.120 kb on + strand, within CSW01_16175 at 378.130 kb on + strand, within CSW01_16175 at 378.182 kb on + strand, within CSW01_16175 at 378.190 kb on - strand, within CSW01_16175 at 378.190 kb on - strand, within CSW01_16175 at 378.190 kb on - strand, within CSW01_16175 at 378.190 kb on - strand, within CSW01_16175 at 378.257 kb on - strand, within CSW01_16175 at 378.303 kb on - strand, within CSW01_16175 at 378.587 kb on + strand at 378.587 kb on + strand at 378.590 kb on - strand at 378.678 kb on + strand, within CSW01_16180 at 378.678 kb on + strand, within CSW01_16180 at 378.686 kb on - strand, within CSW01_16180 at 378.686 kb on - strand, within CSW01_16180 at 378.686 kb on - strand, within CSW01_16180 at 378.698 kb on + strand, within CSW01_16180 at 378.706 kb on - strand, within CSW01_16180 at 378.742 kb on + strand, within CSW01_16180 at 378.742 kb on + strand, within CSW01_16180 at 378.742 kb on + strand, within CSW01_16180 at 378.767 kb on + strand, within CSW01_16180 at 378.767 kb on + strand, within CSW01_16180 at 378.775 kb on - strand, within CSW01_16180 at 378.775 kb on - strand, within CSW01_16180 at 378.775 kb on - strand, within CSW01_16180 at 378.783 kb on + strand, within CSW01_16180 at 378.783 kb on + strand, within CSW01_16180 at 378.783 kb on + strand, within CSW01_16180 at 378.783 kb on + strand, within CSW01_16180 at 378.791 kb on - strand, within CSW01_16180 at 378.791 kb on - strand, within CSW01_16180 at 378.851 kb on + strand, within CSW01_16180 at 378.859 kb on - strand, within CSW01_16180 at 378.859 kb on - strand, within CSW01_16180 at 378.859 kb on - strand, within CSW01_16180 at 378.859 kb on - strand, within CSW01_16180 at 378.939 kb on + strand, within CSW01_16185 at 378.991 kb on + strand, within CSW01_16185 at 378.998 kb on + strand, within CSW01_16185 at 379.184 kb on + strand, within CSW01_16190 at 379.290 kb on - strand at 379.363 kb on + strand, within CSW01_16195 at 379.389 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep1 remove 377,084 - +1.8 377,085 - -2.8 377,193 - CSW01_16165 0.61 +1.8 378,042 + CSW01_16175 0.20 -3.0 378,078 + CSW01_16175 0.27 -3.3 378,109 - CSW01_16175 0.34 -0.1 378,113 + CSW01_16175 0.35 +0.5 378,113 + CSW01_16175 0.35 +0.6 378,113 + CSW01_16175 0.35 -2.6 378,113 + CSW01_16175 0.35 -3.1 378,113 + CSW01_16175 0.35 +0.3 378,120 + CSW01_16175 0.37 -0.6 378,130 + CSW01_16175 0.39 +0.9 378,182 + CSW01_16175 0.50 -0.6 378,190 - CSW01_16175 0.52 -0.3 378,190 - CSW01_16175 0.52 +0.4 378,190 - CSW01_16175 0.52 -1.1 378,190 - CSW01_16175 0.52 -0.5 378,257 - CSW01_16175 0.66 +0.6 378,303 - CSW01_16175 0.76 -2.9 378,587 + +0.2 378,587 + -0.6 378,590 - -0.6 378,678 + CSW01_16180 0.32 -2.2 378,678 + CSW01_16180 0.32 -3.4 378,686 - CSW01_16180 0.34 -0.2 378,686 - CSW01_16180 0.34 +0.5 378,686 - CSW01_16180 0.34 -1.2 378,698 + CSW01_16180 0.38 -0.5 378,706 - CSW01_16180 0.40 -0.7 378,742 + CSW01_16180 0.50 +0.2 378,742 + CSW01_16180 0.50 -0.5 378,742 + CSW01_16180 0.50 -0.5 378,767 + CSW01_16180 0.57 +1.2 378,767 + CSW01_16180 0.57 +0.1 378,775 - CSW01_16180 0.59 -1.1 378,775 - CSW01_16180 0.59 -1.1 378,775 - CSW01_16180 0.59 +0.3 378,783 + CSW01_16180 0.61 -0.0 378,783 + CSW01_16180 0.61 +0.4 378,783 + CSW01_16180 0.61 -3.1 378,783 + CSW01_16180 0.61 -2.7 378,791 - CSW01_16180 0.63 +1.2 378,791 - CSW01_16180 0.63 +0.0 378,851 + CSW01_16180 0.80 -0.5 378,859 - CSW01_16180 0.82 -1.0 378,859 - CSW01_16180 0.82 +0.3 378,859 - CSW01_16180 0.82 +0.2 378,859 - CSW01_16180 0.82 +0.0 378,939 + CSW01_16185 0.18 +0.7 378,991 + CSW01_16185 0.78 +1.2 378,998 + CSW01_16185 0.86 +1.2 379,184 + CSW01_16190 0.30 +0.4 379,290 - -0.5 379,363 + CSW01_16195 0.76 -0.2 379,389 - -2.4
Or see this region's nucleotide sequence