Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_15660

Experiment: ICP3_phage_41.1_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_15645 and CSW01_15650 are separated by 272 nucleotidesCSW01_15650 and CSW01_15655 are separated by 43 nucleotidesCSW01_15655 and CSW01_15660 overlap by 35 nucleotidesCSW01_15660 and CSW01_15665 are separated by 3 nucleotidesCSW01_15665 and CSW01_15670 are separated by 51 nucleotidesCSW01_15670 and CSW01_15675 are separated by 127 nucleotides CSW01_15645: CSW01_15645 - DUF3709 domain-containing protein, at 329,546 to 329,869 _15645 CSW01_15650: CSW01_15650 - positive regulator AgmR, at 330,142 to 330,264 _15650 CSW01_15655: CSW01_15655 - ggdef family protein, at 330,308 to 330,422 _15655 CSW01_15660: CSW01_15660 - cell shape-determining protein MreC, at 330,388 to 330,519 _15660 CSW01_15665: CSW01_15665 - hypothetical protein, at 330,523 to 330,618 _15665 CSW01_15670: CSW01_15670 - peroxiredoxin, at 330,670 to 331,158 _15670 CSW01_15675: CSW01_15675 - hypothetical protein, at 331,286 to 331,948 _15675 Position (kb) 330 331Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 329.840 kb on + strandat 330.308 kb on + strandat 330.318 kb on - strandat 330.400 kb on + strandat 330.400 kb on + strandat 330.408 kb on - strandat 330.425 kb on + strand, within CSW01_15660at 330.438 kb on - strand, within CSW01_15660at 330.641 kb on + strandat 330.769 kb on - strand, within CSW01_15670at 330.769 kb on - strand, within CSW01_15670at 330.769 kb on - strand, within CSW01_15670at 330.769 kb on - strand, within CSW01_15670at 330.825 kb on - strand, within CSW01_15670at 330.994 kb on + strand, within CSW01_15670at 330.994 kb on + strand, within CSW01_15670at 330.994 kb on + strand, within CSW01_15670at 330.994 kb on + strand, within CSW01_15670at 330.994 kb on + strand, within CSW01_15670at 331.002 kb on - strand, within CSW01_15670at 331.061 kb on + strand, within CSW01_15670at 331.061 kb on + strand, within CSW01_15670at 331.061 kb on + strand, within CSW01_15670at 331.061 kb on + strand, within CSW01_15670at 331.061 kb on + strand, within CSW01_15670at 331.061 kb on + strand, within CSW01_15670at 331.069 kb on - strand, within CSW01_15670at 331.071 kb on + strand, within CSW01_15670at 331.281 kb on - strandat 331.431 kb on + strand, within CSW01_15675at 331.431 kb on + strand, within CSW01_15675at 331.431 kb on + strand, within CSW01_15675at 331.439 kb on - strand, within CSW01_15675at 331.439 kb on - strand, within CSW01_15675at 331.444 kb on + strand, within CSW01_15675at 331.452 kb on - strand, within CSW01_15675at 331.485 kb on + strand, within CSW01_15675at 331.490 kb on + strand, within CSW01_15675at 331.490 kb on + strand, within CSW01_15675at 331.490 kb on + strand, within CSW01_15675at 331.490 kb on + strand, within CSW01_15675at 331.490 kb on + strand, within CSW01_15675at 331.498 kb on - strand, within CSW01_15675at 331.498 kb on - strand, within CSW01_15675at 331.498 kb on - strand, within CSW01_15675at 331.498 kb on - strand, within CSW01_15675at 331.498 kb on - strand, within CSW01_15675at 331.498 kb on - strand, within CSW01_15675at 331.498 kb on - strand, within CSW01_15675at 331.498 kb on - strand, within CSW01_15675at 331.498 kb on - strand, within CSW01_15675

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep1
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329,840 + -3.0
330,308 + +1.0
330,318 - +1.0
330,400 + +0.9
330,400 + -1.4
330,408 - -1.5
330,425 + CSW01_15660 0.28 -3.2
330,438 - CSW01_15660 0.38 -0.5
330,641 + -2.3
330,769 - CSW01_15670 0.20 -0.3
330,769 - CSW01_15670 0.20 +1.1
330,769 - CSW01_15670 0.20 +0.8
330,769 - CSW01_15670 0.20 -1.1
330,825 - CSW01_15670 0.32 -0.1
330,994 + CSW01_15670 0.66 +1.1
330,994 + CSW01_15670 0.66 +1.1
330,994 + CSW01_15670 0.66 -0.6
330,994 + CSW01_15670 0.66 +2.0
330,994 + CSW01_15670 0.66 -2.1
331,002 - CSW01_15670 0.68 +0.2
331,061 + CSW01_15670 0.80 +1.6
331,061 + CSW01_15670 0.80 +1.5
331,061 + CSW01_15670 0.80 +0.5
331,061 + CSW01_15670 0.80 +0.0
331,061 + CSW01_15670 0.80 -2.8
331,061 + CSW01_15670 0.80 +0.3
331,069 - CSW01_15670 0.82 +0.3
331,071 + CSW01_15670 0.82 -0.8
331,281 - +1.2
331,431 + CSW01_15675 0.22 +0.3
331,431 + CSW01_15675 0.22 +1.8
331,431 + CSW01_15675 0.22 -1.7
331,439 - CSW01_15675 0.23 -0.4
331,439 - CSW01_15675 0.23 -0.5
331,444 + CSW01_15675 0.24 -1.3
331,452 - CSW01_15675 0.25 +0.1
331,485 + CSW01_15675 0.30 -0.7
331,490 + CSW01_15675 0.31 -2.2
331,490 + CSW01_15675 0.31 -2.3
331,490 + CSW01_15675 0.31 +0.7
331,490 + CSW01_15675 0.31 +0.9
331,490 + CSW01_15675 0.31 +0.4
331,498 - CSW01_15675 0.32 +0.3
331,498 - CSW01_15675 0.32 +0.9
331,498 - CSW01_15675 0.32 -3.4
331,498 - CSW01_15675 0.32 +0.1
331,498 - CSW01_15675 0.32 +0.2
331,498 - CSW01_15675 0.32 -3.2
331,498 - CSW01_15675 0.32 +1.1
331,498 - CSW01_15675 0.32 -2.2
331,498 - CSW01_15675 0.32 -0.4

Or see this region's nucleotide sequence