Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_15365

Experiment: ICP3_phage_41.1_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_15360 and CSW01_15365 are separated by 275 nucleotidesCSW01_15365 and CSW01_15370 are separated by 520 nucleotides CSW01_15360: CSW01_15360 - IS5 family transposase ISVch5, at 301,226 to 302,206 _15360 CSW01_15365: CSW01_15365 - hypothetical protein, at 302,482 to 303,705 _15365 CSW01_15370: CSW01_15370 - hypothetical protein, at 304,226 to 304,756 _15370 Position (kb) 302 303 304Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 302.315 kb on + strandat 302.315 kb on + strandat 302.320 kb on + strandat 302.378 kb on - strandat 302.416 kb on - strandat 302.502 kb on + strandat 302.541 kb on + strandat 302.549 kb on - strandat 302.559 kb on + strandat 302.568 kb on + strandat 302.589 kb on - strandat 302.629 kb on + strand, within CSW01_15365at 302.682 kb on + strand, within CSW01_15365at 302.697 kb on - strand, within CSW01_15365at 302.850 kb on + strand, within CSW01_15365at 302.868 kb on + strand, within CSW01_15365at 302.883 kb on + strand, within CSW01_15365at 302.883 kb on + strand, within CSW01_15365at 302.886 kb on - strand, within CSW01_15365at 302.891 kb on - strand, within CSW01_15365at 302.891 kb on - strand, within CSW01_15365at 302.950 kb on + strand, within CSW01_15365at 302.996 kb on + strand, within CSW01_15365at 303.107 kb on + strand, within CSW01_15365at 303.130 kb on - strand, within CSW01_15365at 303.141 kb on + strand, within CSW01_15365at 303.141 kb on + strand, within CSW01_15365at 303.159 kb on - strand, within CSW01_15365at 303.193 kb on - strand, within CSW01_15365at 303.230 kb on - strand, within CSW01_15365at 303.237 kb on + strand, within CSW01_15365at 303.253 kb on - strand, within CSW01_15365at 303.256 kb on + strand, within CSW01_15365at 303.256 kb on + strand, within CSW01_15365at 303.264 kb on - strand, within CSW01_15365at 303.280 kb on + strand, within CSW01_15365at 303.280 kb on + strand, within CSW01_15365at 303.280 kb on + strand, within CSW01_15365at 303.280 kb on + strand, within CSW01_15365at 303.288 kb on - strand, within CSW01_15365at 303.288 kb on - strand, within CSW01_15365at 303.319 kb on - strand, within CSW01_15365at 303.319 kb on - strand, within CSW01_15365at 303.325 kb on + strand, within CSW01_15365at 303.365 kb on - strand, within CSW01_15365at 303.365 kb on - strand, within CSW01_15365at 303.365 kb on - strand, within CSW01_15365at 303.411 kb on - strand, within CSW01_15365at 303.539 kb on - strand, within CSW01_15365at 303.624 kb on - strandat 303.630 kb on + strandat 303.697 kb on + strandat 303.781 kb on + strandat 303.781 kb on + strandat 303.789 kb on - strandat 303.791 kb on + strandat 303.791 kb on + strandat 303.799 kb on - strandat 303.823 kb on - strandat 303.834 kb on + strandat 303.834 kb on - strandat 303.859 kb on + strandat 303.930 kb on - strandat 303.948 kb on - strandat 303.975 kb on + strandat 303.975 kb on + strandat 303.982 kb on + strandat 303.983 kb on - strandat 304.358 kb on - strand, within CSW01_15370at 304.370 kb on + strand, within CSW01_15370at 304.390 kb on - strand, within CSW01_15370at 304.393 kb on - strand, within CSW01_15370at 304.518 kb on + strand, within CSW01_15370at 304.518 kb on + strand, within CSW01_15370at 304.526 kb on - strand, within CSW01_15370at 304.526 kb on - strand, within CSW01_15370at 304.526 kb on - strand, within CSW01_15370at 304.530 kb on + strand, within CSW01_15370at 304.550 kb on + strand, within CSW01_15370at 304.558 kb on - strand, within CSW01_15370at 304.571 kb on - strand, within CSW01_15370at 304.610 kb on + strand, within CSW01_15370at 304.618 kb on - strand, within CSW01_15370at 304.618 kb on - strand, within CSW01_15370at 304.640 kb on - strand, within CSW01_15370at 304.640 kb on - strand, within CSW01_15370at 304.640 kb on - strand, within CSW01_15370at 304.640 kb on - strand, within CSW01_15370at 304.653 kb on - strand, within CSW01_15370at 304.684 kb on - strand, within CSW01_15370

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep1
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302,315 + +0.7
302,315 + +1.1
302,320 + -2.1
302,378 - +2.1
302,416 - -1.7
302,502 + +0.7
302,541 + -0.7
302,549 - +1.0
302,559 + +0.8
302,568 + -0.8
302,589 - +1.2
302,629 + CSW01_15365 0.12 -1.6
302,682 + CSW01_15365 0.16 +1.0
302,697 - CSW01_15365 0.18 -0.9
302,850 + CSW01_15365 0.30 -3.8
302,868 + CSW01_15365 0.32 -1.6
302,883 + CSW01_15365 0.33 +1.5
302,883 + CSW01_15365 0.33 -0.2
302,886 - CSW01_15365 0.33 +0.9
302,891 - CSW01_15365 0.33 +0.6
302,891 - CSW01_15365 0.33 +0.6
302,950 + CSW01_15365 0.38 -0.2
302,996 + CSW01_15365 0.42 -2.2
303,107 + CSW01_15365 0.51 -0.3
303,130 - CSW01_15365 0.53 -1.9
303,141 + CSW01_15365 0.54 -3.6
303,141 + CSW01_15365 0.54 +1.9
303,159 - CSW01_15365 0.55 -2.8
303,193 - CSW01_15365 0.58 -3.2
303,230 - CSW01_15365 0.61 +1.2
303,237 + CSW01_15365 0.62 +0.4
303,253 - CSW01_15365 0.63 +0.7
303,256 + CSW01_15365 0.63 -0.6
303,256 + CSW01_15365 0.63 -0.8
303,264 - CSW01_15365 0.64 +1.0
303,280 + CSW01_15365 0.65 -1.0
303,280 + CSW01_15365 0.65 +1.5
303,280 + CSW01_15365 0.65 +0.5
303,280 + CSW01_15365 0.65 -2.3
303,288 - CSW01_15365 0.66 +1.4
303,288 - CSW01_15365 0.66 +0.5
303,319 - CSW01_15365 0.68 +0.5
303,319 - CSW01_15365 0.68 +0.3
303,325 + CSW01_15365 0.69 -2.3
303,365 - CSW01_15365 0.72 -1.7
303,365 - CSW01_15365 0.72 +1.2
303,365 - CSW01_15365 0.72 -2.0
303,411 - CSW01_15365 0.76 -0.3
303,539 - CSW01_15365 0.86 -0.1
303,624 - -0.5
303,630 + +0.4
303,697 + -0.9
303,781 + +0.7
303,781 + -0.1
303,789 - +0.2
303,791 + -1.5
303,791 + +0.0
303,799 - +2.2
303,823 - +0.2
303,834 + -1.9
303,834 - -1.6
303,859 + +1.4
303,930 - +0.2
303,948 - -0.1
303,975 + +0.8
303,975 + +0.1
303,982 + -1.1
303,983 - +1.3
304,358 - CSW01_15370 0.25 -3.6
304,370 + CSW01_15370 0.27 +1.0
304,390 - CSW01_15370 0.31 -0.6
304,393 - CSW01_15370 0.31 +0.4
304,518 + CSW01_15370 0.55 +1.0
304,518 + CSW01_15370 0.55 -1.0
304,526 - CSW01_15370 0.56 +0.4
304,526 - CSW01_15370 0.56 -0.8
304,526 - CSW01_15370 0.56 -0.0
304,530 + CSW01_15370 0.57 -2.0
304,550 + CSW01_15370 0.61 +0.7
304,558 - CSW01_15370 0.63 -0.2
304,571 - CSW01_15370 0.65 -0.2
304,610 + CSW01_15370 0.72 +0.4
304,618 - CSW01_15370 0.74 -2.3
304,618 - CSW01_15370 0.74 -1.0
304,640 - CSW01_15370 0.78 -2.3
304,640 - CSW01_15370 0.78 +0.2
304,640 - CSW01_15370 0.78 -0.6
304,640 - CSW01_15370 0.78 -0.6
304,653 - CSW01_15370 0.80 -0.3
304,684 - CSW01_15370 0.86 +0.7

Or see this region's nucleotide sequence