Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_15355

Experiment: ICP3_phage_41.1_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_15350 and CSW01_15355 are separated by 466 nucleotidesCSW01_15355 and CSW01_15360 are separated by 45 nucleotides CSW01_15350: CSW01_15350 - glycine cleavage system aminomethyltransferase T, at 298,426 to 299,556 _15350 CSW01_15355: CSW01_15355 - integrase, at 300,023 to 301,180 _15355 CSW01_15360: CSW01_15360 - IS5 family transposase ISVch5, at 301,226 to 302,206 _15360 Position (kb) 300 301 302Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 299.090 kb on + strand, within CSW01_15350at 299.096 kb on + strand, within CSW01_15350at 299.096 kb on + strand, within CSW01_15350at 299.096 kb on + strand, within CSW01_15350at 299.096 kb on + strand, within CSW01_15350at 299.096 kb on + strand, within CSW01_15350at 299.096 kb on + strand, within CSW01_15350at 299.104 kb on - strand, within CSW01_15350at 299.104 kb on - strand, within CSW01_15350at 299.203 kb on - strand, within CSW01_15350at 299.203 kb on - strand, within CSW01_15350at 299.222 kb on - strand, within CSW01_15350at 299.286 kb on + strand, within CSW01_15350at 299.342 kb on + strand, within CSW01_15350at 299.342 kb on + strand, within CSW01_15350at 299.342 kb on + strand, within CSW01_15350at 299.342 kb on + strand, within CSW01_15350at 299.350 kb on - strand, within CSW01_15350at 299.364 kb on + strand, within CSW01_15350at 299.436 kb on + strand, within CSW01_15350at 299.436 kb on + strand, within CSW01_15350at 299.449 kb on - strandat 299.455 kb on + strandat 299.463 kb on - strandat 299.463 kb on - strandat 299.507 kb on - strandat 299.557 kb on - strandat 299.710 kb on - strandat 299.710 kb on - strandat 299.847 kb on - strandat 299.861 kb on + strandat 299.861 kb on + strandat 299.861 kb on + strandat 299.861 kb on + strandat 299.861 kb on + strandat 299.861 kb on + strandat 299.869 kb on - strandat 299.869 kb on - strandat 299.869 kb on - strandat 299.869 kb on - strandat 300.075 kb on + strandat 300.078 kb on - strandat 300.102 kb on + strandat 300.102 kb on + strandat 300.110 kb on - strandat 300.150 kb on - strand, within CSW01_15355at 300.222 kb on + strand, within CSW01_15355at 300.366 kb on + strand, within CSW01_15355at 300.366 kb on + strand, within CSW01_15355at 300.366 kb on + strand, within CSW01_15355at 300.366 kb on + strand, within CSW01_15355at 300.366 kb on + strand, within CSW01_15355at 300.366 kb on + strand, within CSW01_15355at 300.366 kb on + strand, within CSW01_15355at 300.366 kb on + strand, within CSW01_15355at 300.366 kb on + strand, within CSW01_15355at 300.366 kb on + strand, within CSW01_15355at 300.366 kb on + strand, within CSW01_15355at 300.366 kb on + strand, within CSW01_15355at 300.366 kb on + strand, within CSW01_15355at 300.374 kb on - strand, within CSW01_15355at 300.374 kb on - strand, within CSW01_15355at 300.374 kb on - strand, within CSW01_15355at 300.374 kb on - strand, within CSW01_15355at 300.374 kb on - strand, within CSW01_15355at 300.374 kb on - strand, within CSW01_15355at 300.374 kb on - strand, within CSW01_15355at 300.374 kb on - strand, within CSW01_15355at 300.378 kb on + strand, within CSW01_15355at 300.396 kb on - strand, within CSW01_15355at 300.414 kb on + strand, within CSW01_15355at 300.414 kb on + strand, within CSW01_15355at 300.414 kb on + strand, within CSW01_15355at 300.422 kb on - strand, within CSW01_15355at 300.426 kb on + strand, within CSW01_15355at 300.505 kb on + strand, within CSW01_15355at 300.506 kb on - strand, within CSW01_15355at 300.546 kb on + strand, within CSW01_15355at 300.552 kb on - strand, within CSW01_15355at 300.554 kb on - strand, within CSW01_15355at 300.606 kb on + strand, within CSW01_15355at 300.750 kb on - strand, within CSW01_15355at 300.804 kb on - strand, within CSW01_15355at 300.841 kb on + strand, within CSW01_15355at 300.947 kb on + strand, within CSW01_15355at 300.947 kb on + strand, within CSW01_15355at 300.947 kb on + strand, within CSW01_15355at 300.952 kb on + strand, within CSW01_15355at 300.955 kb on - strand, within CSW01_15355at 300.955 kb on - strand, within CSW01_15355at 300.965 kb on - strand, within CSW01_15355at 300.965 kb on - strand, within CSW01_15355at 301.016 kb on - strand, within CSW01_15355at 301.059 kb on - strand, within CSW01_15355at 301.120 kb on - strandat 301.127 kb on - strandat 301.135 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep1
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299,090 + CSW01_15350 0.59 -0.2
299,096 + CSW01_15350 0.59 -3.2
299,096 + CSW01_15350 0.59 -0.4
299,096 + CSW01_15350 0.59 -1.0
299,096 + CSW01_15350 0.59 -0.8
299,096 + CSW01_15350 0.59 +0.2
299,096 + CSW01_15350 0.59 -0.2
299,104 - CSW01_15350 0.60 -2.8
299,104 - CSW01_15350 0.60 -0.4
299,203 - CSW01_15350 0.69 -1.6
299,203 - CSW01_15350 0.69 -1.0
299,222 - CSW01_15350 0.70 -1.2
299,286 + CSW01_15350 0.76 -1.3
299,342 + CSW01_15350 0.81 +1.0
299,342 + CSW01_15350 0.81 -1.3
299,342 + CSW01_15350 0.81 +0.8
299,342 + CSW01_15350 0.81 -3.3
299,350 - CSW01_15350 0.82 -2.5
299,364 + CSW01_15350 0.83 -0.9
299,436 + CSW01_15350 0.89 +1.7
299,436 + CSW01_15350 0.89 +0.3
299,449 - +1.1
299,455 + +1.0
299,463 - -1.3
299,463 - -0.4
299,507 - -2.9
299,557 - +0.5
299,710 - +0.5
299,710 - -1.8
299,847 - +0.4
299,861 + +0.6
299,861 + -3.5
299,861 + +0.1
299,861 + -0.0
299,861 + +2.1
299,861 + +0.5
299,869 - +0.9
299,869 - -1.0
299,869 - +1.1
299,869 - -0.4
300,075 + +1.1
300,078 - -1.3
300,102 + -0.3
300,102 + -0.5
300,110 - +0.3
300,150 - CSW01_15355 0.11 -2.5
300,222 + CSW01_15355 0.17 -0.2
300,366 + CSW01_15355 0.30 +2.2
300,366 + CSW01_15355 0.30 +0.5
300,366 + CSW01_15355 0.30 +1.3
300,366 + CSW01_15355 0.30 -3.4
300,366 + CSW01_15355 0.30 -0.2
300,366 + CSW01_15355 0.30 -3.0
300,366 + CSW01_15355 0.30 +2.0
300,366 + CSW01_15355 0.30 +1.1
300,366 + CSW01_15355 0.30 -1.1
300,366 + CSW01_15355 0.30 -2.4
300,366 + CSW01_15355 0.30 -0.9
300,366 + CSW01_15355 0.30 +0.6
300,366 + CSW01_15355 0.30 +2.8
300,374 - CSW01_15355 0.30 +1.2
300,374 - CSW01_15355 0.30 +0.6
300,374 - CSW01_15355 0.30 -0.3
300,374 - CSW01_15355 0.30 +0.2
300,374 - CSW01_15355 0.30 -3.1
300,374 - CSW01_15355 0.30 +0.2
300,374 - CSW01_15355 0.30 -1.3
300,374 - CSW01_15355 0.30 -2.4
300,378 + CSW01_15355 0.31 -1.5
300,396 - CSW01_15355 0.32 +0.4
300,414 + CSW01_15355 0.34 -1.2
300,414 + CSW01_15355 0.34 -2.9
300,414 + CSW01_15355 0.34 -0.8
300,422 - CSW01_15355 0.34 -1.4
300,426 + CSW01_15355 0.35 +0.9
300,505 + CSW01_15355 0.42 -1.7
300,506 - CSW01_15355 0.42 -0.3
300,546 + CSW01_15355 0.45 -2.5
300,552 - CSW01_15355 0.46 -1.5
300,554 - CSW01_15355 0.46 +0.2
300,606 + CSW01_15355 0.50 -1.0
300,750 - CSW01_15355 0.63 -1.9
300,804 - CSW01_15355 0.67 -3.1
300,841 + CSW01_15355 0.71 -1.2
300,947 + CSW01_15355 0.80 -2.3
300,947 + CSW01_15355 0.80 +0.4
300,947 + CSW01_15355 0.80 +0.5
300,952 + CSW01_15355 0.80 -2.4
300,955 - CSW01_15355 0.80 -0.7
300,955 - CSW01_15355 0.80 +0.9
300,965 - CSW01_15355 0.81 +0.8
300,965 - CSW01_15355 0.81 -2.7
301,016 - CSW01_15355 0.86 +0.7
301,059 - CSW01_15355 0.89 +0.8
301,120 - -1.8
301,127 - +0.6
301,135 - +1.0

Or see this region's nucleotide sequence