Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_15275

Experiment: ICP3_phage_41.1_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_15270 and CSW01_15275 are separated by 183 nucleotidesCSW01_15275 and CSW01_15280 are separated by 59 nucleotidesCSW01_15280 and CSW01_15285 are separated by 101 nucleotides CSW01_15270: CSW01_15270 - transcriptional regulator, at 280,492 to 281,670 _15270 CSW01_15275: CSW01_15275 - hypothetical protein, at 281,854 to 282,234 _15275 CSW01_15280: CSW01_15280 - AraC family transcriptional regulator, at 282,294 to 283,067 _15280 CSW01_15285: CSW01_15285 - MFS transporter, at 283,169 to 284,308 _15285 Position (kb) 281 282 283Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 280.862 kb on - strand, within CSW01_15270at 280.874 kb on + strand, within CSW01_15270at 280.906 kb on - strand, within CSW01_15270at 280.963 kb on + strand, within CSW01_15270at 280.984 kb on + strand, within CSW01_15270at 280.984 kb on + strand, within CSW01_15270at 280.992 kb on - strand, within CSW01_15270at 280.995 kb on + strand, within CSW01_15270at 281.036 kb on + strand, within CSW01_15270at 281.036 kb on + strand, within CSW01_15270at 281.044 kb on - strand, within CSW01_15270at 281.163 kb on - strand, within CSW01_15270at 281.163 kb on - strand, within CSW01_15270at 281.173 kb on - strand, within CSW01_15270at 281.179 kb on + strand, within CSW01_15270at 281.179 kb on + strand, within CSW01_15270at 281.279 kb on + strand, within CSW01_15270at 281.314 kb on - strand, within CSW01_15270at 281.322 kb on + strand, within CSW01_15270at 281.332 kb on - strand, within CSW01_15270at 281.341 kb on + strand, within CSW01_15270at 281.341 kb on + strand, within CSW01_15270at 281.349 kb on - strand, within CSW01_15270at 281.436 kb on - strand, within CSW01_15270at 281.436 kb on - strand, within CSW01_15270at 281.487 kb on + strand, within CSW01_15270at 281.487 kb on + strand, within CSW01_15270at 281.487 kb on + strand, within CSW01_15270at 281.495 kb on - strand, within CSW01_15270at 281.495 kb on - strand, within CSW01_15270at 281.495 kb on - strand, within CSW01_15270at 281.507 kb on + strand, within CSW01_15270at 281.507 kb on + strand, within CSW01_15270at 281.507 kb on + strand, within CSW01_15270at 281.507 kb on - strand, within CSW01_15270at 281.549 kb on - strand, within CSW01_15270at 281.590 kb on + strandat 281.609 kb on + strandat 281.609 kb on + strandat 281.617 kb on - strandat 281.619 kb on + strandat 281.632 kb on - strandat 281.642 kb on - strandat 281.706 kb on + strandat 281.719 kb on - strandat 281.721 kb on + strandat 281.721 kb on + strandat 281.721 kb on + strandat 281.721 kb on + strandat 281.722 kb on - strandat 281.729 kb on - strandat 281.729 kb on - strandat 281.729 kb on - strandat 281.844 kb on + strandat 281.886 kb on + strandat 281.931 kb on - strand, within CSW01_15275at 281.931 kb on - strand, within CSW01_15275at 281.931 kb on - strand, within CSW01_15275at 281.986 kb on + strand, within CSW01_15275at 281.991 kb on + strand, within CSW01_15275at 281.991 kb on + strand, within CSW01_15275at 281.991 kb on + strand, within CSW01_15275at 281.991 kb on + strand, within CSW01_15275at 281.999 kb on - strand, within CSW01_15275at 281.999 kb on - strand, within CSW01_15275at 282.167 kb on + strand, within CSW01_15275at 282.315 kb on + strandat 282.315 kb on + strandat 282.315 kb on + strandat 282.315 kb on + strandat 282.315 kb on + strandat 282.315 kb on + strandat 282.315 kb on + strandat 282.315 kb on + strandat 282.323 kb on - strandat 282.323 kb on - strandat 282.323 kb on - strandat 282.323 kb on - strandat 282.323 kb on - strandat 282.523 kb on + strand, within CSW01_15280at 282.537 kb on - strand, within CSW01_15280at 282.644 kb on - strand, within CSW01_15280at 282.654 kb on - strand, within CSW01_15280at 282.692 kb on + strand, within CSW01_15280at 282.692 kb on + strand, within CSW01_15280at 282.692 kb on + strand, within CSW01_15280at 282.697 kb on + strand, within CSW01_15280at 282.700 kb on - strand, within CSW01_15280at 282.700 kb on - strand, within CSW01_15280at 282.712 kb on - strand, within CSW01_15280at 282.712 kb on - strand, within CSW01_15280at 282.773 kb on + strand, within CSW01_15280at 282.783 kb on + strand, within CSW01_15280at 282.791 kb on - strand, within CSW01_15280at 282.805 kb on - strand, within CSW01_15280at 282.839 kb on - strand, within CSW01_15280at 282.839 kb on - strand, within CSW01_15280at 282.895 kb on - strand, within CSW01_15280at 282.906 kb on + strand, within CSW01_15280at 282.914 kb on - strand, within CSW01_15280at 282.971 kb on + strand, within CSW01_15280at 283.027 kb on - strandat 283.047 kb on - strandat 283.055 kb on - strandat 283.111 kb on + strandat 283.116 kb on + strandat 283.125 kb on + strandat 283.125 kb on + strandat 283.125 kb on + strandat 283.133 kb on - strandat 283.133 kb on - strandat 283.133 kb on - strandat 283.133 kb on - strandat 283.155 kb on + strandat 283.179 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep1
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280,862 - CSW01_15270 0.31 -1.3
280,874 + CSW01_15270 0.32 +1.1
280,906 - CSW01_15270 0.35 +1.9
280,963 + CSW01_15270 0.40 -2.0
280,984 + CSW01_15270 0.42 +1.3
280,984 + CSW01_15270 0.42 -1.7
280,992 - CSW01_15270 0.42 +0.2
280,995 + CSW01_15270 0.43 -1.2
281,036 + CSW01_15270 0.46 +0.4
281,036 + CSW01_15270 0.46 -0.1
281,044 - CSW01_15270 0.47 -0.9
281,163 - CSW01_15270 0.57 +1.5
281,163 - CSW01_15270 0.57 -2.3
281,173 - CSW01_15270 0.58 +0.3
281,179 + CSW01_15270 0.58 -2.1
281,179 + CSW01_15270 0.58 +0.8
281,279 + CSW01_15270 0.67 -1.5
281,314 - CSW01_15270 0.70 +0.4
281,322 + CSW01_15270 0.70 +0.9
281,332 - CSW01_15270 0.71 +0.3
281,341 + CSW01_15270 0.72 -1.8
281,341 + CSW01_15270 0.72 +0.4
281,349 - CSW01_15270 0.73 -2.3
281,436 - CSW01_15270 0.80 -0.4
281,436 - CSW01_15270 0.80 +0.6
281,487 + CSW01_15270 0.84 +0.1
281,487 + CSW01_15270 0.84 +0.5
281,487 + CSW01_15270 0.84 -2.4
281,495 - CSW01_15270 0.85 +2.5
281,495 - CSW01_15270 0.85 +0.9
281,495 - CSW01_15270 0.85 +0.5
281,507 + CSW01_15270 0.86 +0.0
281,507 + CSW01_15270 0.86 +0.9
281,507 + CSW01_15270 0.86 -0.2
281,507 - CSW01_15270 0.86 -0.6
281,549 - CSW01_15270 0.90 +1.6
281,590 + +0.0
281,609 + +2.4
281,609 + +0.7
281,617 - -1.9
281,619 + +0.3
281,632 - +0.4
281,642 - +0.7
281,706 + -0.8
281,719 - +0.2
281,721 + +0.8
281,721 + -1.7
281,721 + -2.3
281,721 + -1.7
281,722 - -0.4
281,729 - -0.2
281,729 - -1.9
281,729 - +0.5
281,844 + -1.8
281,886 + +0.8
281,931 - CSW01_15275 0.20 +1.6
281,931 - CSW01_15275 0.20 -2.3
281,931 - CSW01_15275 0.20 -2.2
281,986 + CSW01_15275 0.35 +0.6
281,991 + CSW01_15275 0.36 +1.3
281,991 + CSW01_15275 0.36 -1.3
281,991 + CSW01_15275 0.36 +2.7
281,991 + CSW01_15275 0.36 -0.5
281,999 - CSW01_15275 0.38 +1.1
281,999 - CSW01_15275 0.38 -0.5
282,167 + CSW01_15275 0.82 -0.5
282,315 + +0.4
282,315 + +0.7
282,315 + +0.6
282,315 + +0.3
282,315 + -1.4
282,315 + -0.3
282,315 + +1.3
282,315 + +0.8
282,323 - -0.5
282,323 - +0.7
282,323 - +0.2
282,323 - -3.9
282,323 - +0.7
282,523 + CSW01_15280 0.30 -0.3
282,537 - CSW01_15280 0.31 +1.9
282,644 - CSW01_15280 0.45 +1.5
282,654 - CSW01_15280 0.47 -0.6
282,692 + CSW01_15280 0.51 -0.3
282,692 + CSW01_15280 0.51 +0.4
282,692 + CSW01_15280 0.51 -0.2
282,697 + CSW01_15280 0.52 -0.7
282,700 - CSW01_15280 0.52 -1.6
282,700 - CSW01_15280 0.52 +0.3
282,712 - CSW01_15280 0.54 -0.6
282,712 - CSW01_15280 0.54 +0.1
282,773 + CSW01_15280 0.62 -2.2
282,783 + CSW01_15280 0.63 -1.6
282,791 - CSW01_15280 0.64 +0.8
282,805 - CSW01_15280 0.66 -0.7
282,839 - CSW01_15280 0.70 +0.3
282,839 - CSW01_15280 0.70 -0.2
282,895 - CSW01_15280 0.78 +1.7
282,906 + CSW01_15280 0.79 -1.6
282,914 - CSW01_15280 0.80 +1.3
282,971 + CSW01_15280 0.87 -0.8
283,027 - +1.1
283,047 - -0.3
283,055 - +1.1
283,111 + +0.7
283,116 + +0.5
283,125 + +1.3
283,125 + +0.1
283,125 + +0.3
283,133 - -2.0
283,133 - +2.1
283,133 - +0.6
283,133 - -1.7
283,155 + -0.1
283,179 + -0.6

Or see this region's nucleotide sequence