Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_15155

Experiment: ICP3_phage_41.1_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_15145 and CSW01_15150 are separated by 80 nucleotidesCSW01_15150 and CSW01_15155 are separated by 117 nucleotidesCSW01_15155 and CSW01_15160 are separated by 244 nucleotides CSW01_15145: CSW01_15145 - acetate kinase, at 256,236 to 257,429 _15145 CSW01_15150: CSW01_15150 - hypothetical protein, at 257,510 to 257,806 _15150 CSW01_15155: CSW01_15155 - phosphoribosyl-AMP cyclohydrolase, at 257,924 to 258,493 _15155 CSW01_15160: CSW01_15160 - sensor histidine kinase, at 258,738 to 260,387 _15160 Position (kb) 257 258 259Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 257.009 kb on - strand, within CSW01_15145at 257.079 kb on - strand, within CSW01_15145at 257.170 kb on + strand, within CSW01_15145at 257.178 kb on - strand, within CSW01_15145at 257.242 kb on - strand, within CSW01_15145at 257.266 kb on + strand, within CSW01_15145at 257.274 kb on - strand, within CSW01_15145at 257.352 kb on - strandat 257.354 kb on + strandat 257.362 kb on - strandat 257.362 kb on - strandat 257.474 kb on - strandat 257.510 kb on + strandat 257.518 kb on - strandat 257.524 kb on - strandat 257.534 kb on - strandat 257.534 kb on - strandat 257.534 kb on - strandat 257.571 kb on - strand, within CSW01_15150at 257.637 kb on + strand, within CSW01_15150at 257.637 kb on + strand, within CSW01_15150at 257.674 kb on + strand, within CSW01_15150at 257.785 kb on + strandat 257.840 kb on + strandat 257.840 kb on + strandat 257.954 kb on + strandat 257.962 kb on - strandat 257.962 kb on - strandat 258.010 kb on - strand, within CSW01_15155at 258.064 kb on + strand, within CSW01_15155at 258.171 kb on + strand, within CSW01_15155at 258.221 kb on + strand, within CSW01_15155at 258.221 kb on + strand, within CSW01_15155at 258.221 kb on + strand, within CSW01_15155at 258.229 kb on - strand, within CSW01_15155at 258.231 kb on + strand, within CSW01_15155at 258.303 kb on + strand, within CSW01_15155at 258.398 kb on + strand, within CSW01_15155at 258.401 kb on + strand, within CSW01_15155at 258.444 kb on - strandat 258.444 kb on - strandat 258.472 kb on + strandat 258.480 kb on - strandat 258.504 kb on + strandat 258.504 kb on + strandat 258.512 kb on - strandat 258.512 kb on - strandat 258.512 kb on - strandat 258.523 kb on + strandat 258.523 kb on + strandat 258.531 kb on - strandat 258.531 kb on - strandat 258.533 kb on + strandat 258.533 kb on + strandat 258.560 kb on - strandat 258.631 kb on - strandat 258.638 kb on + strandat 258.648 kb on + strandat 258.718 kb on + strandat 258.745 kb on - strandat 258.836 kb on + strandat 258.836 kb on + strandat 258.836 kb on + strandat 258.844 kb on - strandat 258.844 kb on - strandat 258.916 kb on + strand, within CSW01_15160at 258.924 kb on - strand, within CSW01_15160at 258.926 kb on + strand, within CSW01_15160at 258.934 kb on - strand, within CSW01_15160at 259.040 kb on - strand, within CSW01_15160at 259.076 kb on + strand, within CSW01_15160at 259.076 kb on - strand, within CSW01_15160at 259.084 kb on - strand, within CSW01_15160at 259.086 kb on - strand, within CSW01_15160at 259.211 kb on - strand, within CSW01_15160at 259.213 kb on + strand, within CSW01_15160at 259.221 kb on - strand, within CSW01_15160at 259.382 kb on + strand, within CSW01_15160at 259.385 kb on + strand, within CSW01_15160at 259.444 kb on - strand, within CSW01_15160at 259.445 kb on + strand, within CSW01_15160at 259.459 kb on + strand, within CSW01_15160at 259.462 kb on + strand, within CSW01_15160at 259.462 kb on + strand, within CSW01_15160at 259.462 kb on + strand, within CSW01_15160at 259.462 kb on + strand, within CSW01_15160at 259.470 kb on - strand, within CSW01_15160at 259.470 kb on - strand, within CSW01_15160at 259.470 kb on - strand, within CSW01_15160

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep1
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257,009 - CSW01_15145 0.65 +1.5
257,079 - CSW01_15145 0.71 +0.0
257,170 + CSW01_15145 0.78 -0.0
257,178 - CSW01_15145 0.79 -0.5
257,242 - CSW01_15145 0.84 +2.0
257,266 + CSW01_15145 0.86 -0.2
257,274 - CSW01_15145 0.87 -2.2
257,352 - -0.1
257,354 + -1.2
257,362 - +0.0
257,362 - +0.5
257,474 - +0.5
257,510 + -1.1
257,518 - -0.8
257,524 - +0.1
257,534 - -1.8
257,534 - -2.4
257,534 - -1.1
257,571 - CSW01_15150 0.21 +0.9
257,637 + CSW01_15150 0.43 -1.1
257,637 + CSW01_15150 0.43 +0.8
257,674 + CSW01_15150 0.55 -1.7
257,785 + -1.2
257,840 + -2.6
257,840 + +0.8
257,954 + -1.6
257,962 - +1.1
257,962 - +0.5
258,010 - CSW01_15155 0.15 +0.2
258,064 + CSW01_15155 0.25 -3.2
258,171 + CSW01_15155 0.43 -0.5
258,221 + CSW01_15155 0.52 -0.6
258,221 + CSW01_15155 0.52 -1.2
258,221 + CSW01_15155 0.52 -1.8
258,229 - CSW01_15155 0.54 -1.3
258,231 + CSW01_15155 0.54 +0.6
258,303 + CSW01_15155 0.66 +0.3
258,398 + CSW01_15155 0.83 -2.6
258,401 + CSW01_15155 0.84 -2.5
258,444 - +0.8
258,444 - -1.0
258,472 + +1.2
258,480 - -0.7
258,504 + -2.0
258,504 + -1.8
258,512 - +0.6
258,512 - +1.4
258,512 - -0.6
258,523 + -0.7
258,523 + -0.4
258,531 - +0.8
258,531 - -2.0
258,533 + -0.1
258,533 + +1.9
258,560 - +0.3
258,631 - -0.2
258,638 + -0.6
258,648 + -0.1
258,718 + -1.1
258,745 - +2.5
258,836 + -1.4
258,836 + -2.8
258,836 + +1.0
258,844 - +0.5
258,844 - -3.1
258,916 + CSW01_15160 0.11 +1.6
258,924 - CSW01_15160 0.11 -2.7
258,926 + CSW01_15160 0.11 -1.0
258,934 - CSW01_15160 0.12 +0.6
259,040 - CSW01_15160 0.18 +0.7
259,076 + CSW01_15160 0.20 -0.2
259,076 - CSW01_15160 0.20 +0.2
259,084 - CSW01_15160 0.21 -0.2
259,086 - CSW01_15160 0.21 +0.1
259,211 - CSW01_15160 0.29 -0.6
259,213 + CSW01_15160 0.29 -5.0
259,221 - CSW01_15160 0.29 +0.8
259,382 + CSW01_15160 0.39 +0.0
259,385 + CSW01_15160 0.39 +0.9
259,444 - CSW01_15160 0.43 +1.2
259,445 + CSW01_15160 0.43 +0.3
259,459 + CSW01_15160 0.44 +0.3
259,462 + CSW01_15160 0.44 -0.5
259,462 + CSW01_15160 0.44 -1.5
259,462 + CSW01_15160 0.44 +0.9
259,462 + CSW01_15160 0.44 -0.3
259,470 - CSW01_15160 0.44 +2.3
259,470 - CSW01_15160 0.44 -0.1
259,470 - CSW01_15160 0.44 +1.6

Or see this region's nucleotide sequence