Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14955

Experiment: ICP3_phage_41.1_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14950 and CSW01_14955 are separated by 1 nucleotidesCSW01_14955 and CSW01_14960 are separated by 65 nucleotidesCSW01_14960 and CSW01_14965 are separated by 115 nucleotides CSW01_14950: CSW01_14950 - sodium:proton antiporter, at 209,743 to 211,086 _14950 CSW01_14955: CSW01_14955 - potassium channel protein, at 211,088 to 211,930 _14955 CSW01_14960: CSW01_14960 - hypothetical protein, at 211,996 to 212,544 _14960 CSW01_14965: CSW01_14965 - hypothetical protein, at 212,660 to 213,037 _14965 Position (kb) 211 212Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 210.148 kb on + strand, within CSW01_14950at 210.242 kb on + strand, within CSW01_14950at 210.322 kb on - strand, within CSW01_14950at 210.331 kb on - strand, within CSW01_14950at 210.394 kb on + strand, within CSW01_14950at 210.410 kb on + strand, within CSW01_14950at 210.441 kb on + strand, within CSW01_14950at 210.449 kb on + strand, within CSW01_14950at 210.505 kb on - strand, within CSW01_14950at 210.564 kb on + strand, within CSW01_14950at 210.564 kb on + strand, within CSW01_14950at 210.572 kb on - strand, within CSW01_14950at 210.656 kb on + strand, within CSW01_14950at 210.743 kb on + strand, within CSW01_14950at 210.800 kb on + strand, within CSW01_14950at 210.811 kb on + strand, within CSW01_14950at 210.876 kb on - strand, within CSW01_14950at 210.926 kb on - strand, within CSW01_14950at 210.937 kb on + strand, within CSW01_14950at 210.942 kb on + strand, within CSW01_14950at 210.942 kb on + strand, within CSW01_14950at 210.945 kb on - strand, within CSW01_14950at 210.950 kb on - strand, within CSW01_14950at 210.952 kb on + strandat 210.958 kb on + strandat 210.966 kb on - strandat 211.005 kb on + strandat 211.094 kb on - strandat 211.158 kb on + strandat 211.198 kb on - strand, within CSW01_14955at 211.213 kb on - strand, within CSW01_14955at 211.396 kb on + strand, within CSW01_14955at 211.397 kb on + strand, within CSW01_14955at 211.397 kb on + strand, within CSW01_14955at 211.405 kb on - strand, within CSW01_14955at 211.431 kb on - strand, within CSW01_14955at 211.468 kb on - strand, within CSW01_14955at 211.489 kb on + strand, within CSW01_14955at 211.527 kb on + strand, within CSW01_14955at 211.532 kb on + strand, within CSW01_14955at 211.540 kb on - strand, within CSW01_14955at 211.611 kb on + strand, within CSW01_14955at 211.619 kb on - strand, within CSW01_14955at 211.669 kb on - strand, within CSW01_14955at 211.711 kb on - strand, within CSW01_14955at 211.714 kb on + strand, within CSW01_14955at 211.714 kb on + strand, within CSW01_14955at 211.714 kb on + strand, within CSW01_14955at 211.714 kb on + strand, within CSW01_14955at 211.721 kb on - strand, within CSW01_14955at 211.721 kb on - strand, within CSW01_14955at 211.721 kb on - strand, within CSW01_14955at 211.722 kb on - strand, within CSW01_14955at 211.752 kb on - strand, within CSW01_14955at 211.765 kb on + strand, within CSW01_14955at 211.770 kb on + strand, within CSW01_14955at 211.778 kb on - strand, within CSW01_14955at 211.778 kb on - strand, within CSW01_14955at 211.918 kb on + strandat 211.926 kb on - strandat 211.926 kb on - strandat 211.926 kb on - strandat 211.960 kb on + strandat 211.960 kb on + strandat 211.991 kb on - strandat 212.068 kb on - strand, within CSW01_14960at 212.104 kb on - strand, within CSW01_14960at 212.109 kb on - strand, within CSW01_14960at 212.244 kb on - strand, within CSW01_14960at 212.248 kb on - strand, within CSW01_14960at 212.340 kb on + strand, within CSW01_14960at 212.363 kb on - strand, within CSW01_14960at 212.405 kb on + strand, within CSW01_14960at 212.408 kb on - strand, within CSW01_14960at 212.418 kb on - strand, within CSW01_14960at 212.443 kb on + strand, within CSW01_14960at 212.443 kb on + strand, within CSW01_14960at 212.443 kb on + strand, within CSW01_14960at 212.443 kb on + strand, within CSW01_14960at 212.443 kb on + strand, within CSW01_14960at 212.443 kb on + strand, within CSW01_14960at 212.451 kb on - strand, within CSW01_14960at 212.451 kb on - strand, within CSW01_14960at 212.451 kb on - strand, within CSW01_14960at 212.451 kb on - strand, within CSW01_14960at 212.562 kb on - strandat 212.613 kb on + strandat 212.760 kb on + strand, within CSW01_14965

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep1
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210,148 + CSW01_14950 0.30 -1.8
210,242 + CSW01_14950 0.37 +1.1
210,322 - CSW01_14950 0.43 +0.5
210,331 - CSW01_14950 0.44 +1.7
210,394 + CSW01_14950 0.48 +0.3
210,410 + CSW01_14950 0.50 -0.2
210,441 + CSW01_14950 0.52 -4.0
210,449 + CSW01_14950 0.53 -0.6
210,505 - CSW01_14950 0.57 -1.7
210,564 + CSW01_14950 0.61 +0.8
210,564 + CSW01_14950 0.61 -1.9
210,572 - CSW01_14950 0.62 -3.5
210,656 + CSW01_14950 0.68 +0.4
210,743 + CSW01_14950 0.74 +1.2
210,800 + CSW01_14950 0.79 -0.7
210,811 + CSW01_14950 0.79 -0.1
210,876 - CSW01_14950 0.84 +0.9
210,926 - CSW01_14950 0.88 +0.5
210,937 + CSW01_14950 0.89 -0.8
210,942 + CSW01_14950 0.89 -0.5
210,942 + CSW01_14950 0.89 +0.2
210,945 - CSW01_14950 0.89 -0.8
210,950 - CSW01_14950 0.90 -1.6
210,952 + +0.8
210,958 + +1.9
210,966 - +1.6
211,005 + -1.0
211,094 - -0.9
211,158 + +1.0
211,198 - CSW01_14955 0.13 +0.0
211,213 - CSW01_14955 0.15 -0.8
211,396 + CSW01_14955 0.37 -3.4
211,397 + CSW01_14955 0.37 -0.3
211,397 + CSW01_14955 0.37 -0.4
211,405 - CSW01_14955 0.38 +0.4
211,431 - CSW01_14955 0.41 +0.6
211,468 - CSW01_14955 0.45 +1.3
211,489 + CSW01_14955 0.48 -0.9
211,527 + CSW01_14955 0.52 +0.4
211,532 + CSW01_14955 0.53 -3.5
211,540 - CSW01_14955 0.54 +1.6
211,611 + CSW01_14955 0.62 -1.2
211,619 - CSW01_14955 0.63 -0.3
211,669 - CSW01_14955 0.69 -1.3
211,711 - CSW01_14955 0.74 -0.9
211,714 + CSW01_14955 0.74 -0.1
211,714 + CSW01_14955 0.74 +0.4
211,714 + CSW01_14955 0.74 -3.4
211,714 + CSW01_14955 0.74 +0.7
211,721 - CSW01_14955 0.75 -1.6
211,721 - CSW01_14955 0.75 -1.1
211,721 - CSW01_14955 0.75 -0.2
211,722 - CSW01_14955 0.75 +0.2
211,752 - CSW01_14955 0.79 +0.6
211,765 + CSW01_14955 0.80 +0.2
211,770 + CSW01_14955 0.81 -0.3
211,778 - CSW01_14955 0.82 -0.9
211,778 - CSW01_14955 0.82 -0.7
211,918 + +0.6
211,926 - +0.2
211,926 - +0.3
211,926 - +0.0
211,960 + -1.1
211,960 + +0.6
211,991 - +1.2
212,068 - CSW01_14960 0.13 +1.2
212,104 - CSW01_14960 0.20 -0.8
212,109 - CSW01_14960 0.21 +2.5
212,244 - CSW01_14960 0.45 +0.9
212,248 - CSW01_14960 0.46 +0.7
212,340 + CSW01_14960 0.63 +0.8
212,363 - CSW01_14960 0.67 -0.2
212,405 + CSW01_14960 0.74 -0.2
212,408 - CSW01_14960 0.75 +0.3
212,418 - CSW01_14960 0.77 -0.7
212,443 + CSW01_14960 0.81 -2.9
212,443 + CSW01_14960 0.81 -0.6
212,443 + CSW01_14960 0.81 +1.4
212,443 + CSW01_14960 0.81 +0.1
212,443 + CSW01_14960 0.81 -0.5
212,443 + CSW01_14960 0.81 -3.8
212,451 - CSW01_14960 0.83 +0.2
212,451 - CSW01_14960 0.83 -1.9
212,451 - CSW01_14960 0.83 -0.8
212,451 - CSW01_14960 0.83 -0.6
212,562 - +0.9
212,613 + -0.7
212,760 + CSW01_14965 0.26 +1.4

Or see this region's nucleotide sequence