Experiment: ICP3_phage_41.1_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_14805 and CSW01_14810 are separated by 471 nucleotides CSW01_14810 and CSW01_14815 are separated by 237 nucleotides CSW01_14815 and CSW01_14820 are separated by 69 nucleotides CSW01_14820 and CSW01_14825 are separated by 408 nucleotides
CSW01_14805: CSW01_14805 - tryptophanase, at 178,504 to 179,922
_14805
CSW01_14810: CSW01_14810 - tryptophanase leader peptide, at 180,394 to 180,465
_14810
CSW01_14815: CSW01_14815 - hypothetical protein, at 180,703 to 180,915
_14815
CSW01_14820: CSW01_14820 - hypothetical protein, at 180,985 to 181,467
_14820
CSW01_14825: CSW01_14825 - GGDEF domain-containing protein, at 181,876 to 184,008
_14825
Position (kb) 180
181 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 179.706 kb on - strand, within CSW01_14805 at 179.707 kb on - strand, within CSW01_14805 at 179.714 kb on + strand, within CSW01_14805 at 179.756 kb on + strand, within CSW01_14805 at 179.756 kb on + strand, within CSW01_14805 at 179.764 kb on - strand, within CSW01_14805 at 179.775 kb on + strand, within CSW01_14805 at 179.775 kb on + strand, within CSW01_14805 at 179.790 kb on + strand at 179.795 kb on - strand at 179.810 kb on + strand at 179.819 kb on - strand at 179.847 kb on + strand at 179.855 kb on - strand at 179.860 kb on + strand at 179.860 kb on - strand at 179.868 kb on - strand at 180.050 kb on - strand at 180.096 kb on + strand at 180.163 kb on + strand at 180.163 kb on + strand at 180.168 kb on + strand at 180.176 kb on - strand at 180.176 kb on - strand at 180.178 kb on - strand at 180.178 kb on - strand at 180.179 kb on + strand at 180.179 kb on + strand at 180.194 kb on + strand at 180.197 kb on - strand at 180.203 kb on - strand at 180.256 kb on + strand at 180.258 kb on - strand at 180.264 kb on - strand at 180.282 kb on + strand at 180.284 kb on + strand at 180.284 kb on + strand at 180.291 kb on - strand at 180.293 kb on + strand at 180.293 kb on - strand at 180.319 kb on + strand at 180.391 kb on + strand at 180.391 kb on + strand at 180.429 kb on + strand, within CSW01_14810 at 180.429 kb on + strand, within CSW01_14810 at 180.437 kb on - strand, within CSW01_14810 at 180.437 kb on - strand, within CSW01_14810 at 180.437 kb on - strand, within CSW01_14810 at 180.448 kb on + strand, within CSW01_14810 at 180.451 kb on - strand, within CSW01_14810 at 180.527 kb on + strand at 180.603 kb on - strand at 180.652 kb on + strand at 180.652 kb on + strand at 180.658 kb on + strand at 180.658 kb on + strand at 180.658 kb on + strand at 180.658 kb on + strand at 180.658 kb on + strand at 180.658 kb on + strand at 180.658 kb on + strand at 180.662 kb on - strand at 180.663 kb on + strand at 180.666 kb on - strand at 180.666 kb on - strand at 180.666 kb on - strand at 180.666 kb on - strand at 180.666 kb on - strand at 180.666 kb on - strand at 180.666 kb on - strand at 180.666 kb on - strand at 180.697 kb on - strand at 180.766 kb on + strand, within CSW01_14815 at 180.786 kb on + strand, within CSW01_14815 at 180.855 kb on + strand, within CSW01_14815 at 180.863 kb on - strand, within CSW01_14815 at 180.888 kb on - strand, within CSW01_14815 at 180.901 kb on + strand at 180.923 kb on + strand at 180.949 kb on + strand at 180.949 kb on + strand at 180.949 kb on + strand at 180.957 kb on - strand at 180.957 kb on - strand at 180.957 kb on - strand at 181.008 kb on - strand at 181.102 kb on - strand, within CSW01_14820 at 181.160 kb on - strand, within CSW01_14820 at 181.160 kb on - strand, within CSW01_14820 at 181.173 kb on - strand, within CSW01_14820 at 181.225 kb on - strand, within CSW01_14820 at 181.263 kb on + strand, within CSW01_14820 at 181.263 kb on + strand, within CSW01_14820 at 181.263 kb on + strand, within CSW01_14820 at 181.268 kb on + strand, within CSW01_14820 at 181.271 kb on - strand, within CSW01_14820 at 181.271 kb on - strand, within CSW01_14820 at 181.271 kb on - strand, within CSW01_14820 at 181.293 kb on + strand, within CSW01_14820 at 181.301 kb on - strand, within CSW01_14820 at 181.352 kb on + strand, within CSW01_14820 at 181.363 kb on + strand, within CSW01_14820 at 181.420 kb on - strand at 181.554 kb on + strand at 181.571 kb on + strand at 181.572 kb on - strand at 181.579 kb on - strand at 181.579 kb on - strand at 181.579 kb on - strand at 181.581 kb on - strand at 181.581 kb on - strand at 181.858 kb on + strand at 181.866 kb on - strand at 181.901 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep1 remove 179,706 - CSW01_14805 0.85 -2.5 179,707 - CSW01_14805 0.85 -3.7 179,714 + CSW01_14805 0.85 +0.6 179,756 + CSW01_14805 0.88 -0.7 179,756 + CSW01_14805 0.88 -1.5 179,764 - CSW01_14805 0.89 +1.0 179,775 + CSW01_14805 0.90 -1.8 179,775 + CSW01_14805 0.90 -0.6 179,790 + +2.4 179,795 - -2.0 179,810 + +0.7 179,819 - -1.0 179,847 + +0.6 179,855 - +0.3 179,860 + +0.7 179,860 - +0.5 179,868 - +0.9 180,050 - -0.2 180,096 + +0.5 180,163 + -1.0 180,163 + -1.5 180,168 + +0.2 180,176 - -1.6 180,176 - -0.4 180,178 - -0.1 180,178 - -1.4 180,179 + -0.3 180,179 + +0.9 180,194 + +0.0 180,197 - -2.4 180,203 - -1.2 180,256 + -0.1 180,258 - -1.8 180,264 - +0.7 180,282 + +1.3 180,284 + -1.2 180,284 + -0.2 180,291 - -2.0 180,293 + -0.0 180,293 - +0.9 180,319 + -0.5 180,391 + -3.2 180,391 + -1.0 180,429 + CSW01_14810 0.49 -0.7 180,429 + CSW01_14810 0.49 -1.7 180,437 - CSW01_14810 0.60 +0.4 180,437 - CSW01_14810 0.60 -0.1 180,437 - CSW01_14810 0.60 -2.7 180,448 + CSW01_14810 0.75 -0.3 180,451 - CSW01_14810 0.79 -2.7 180,527 + +1.2 180,603 - -0.3 180,652 + -0.8 180,652 + +1.7 180,658 + -1.2 180,658 + +0.4 180,658 + +0.2 180,658 + +0.3 180,658 + +1.1 180,658 + -0.0 180,658 + -1.0 180,662 - -1.1 180,663 + -4.1 180,666 - +0.7 180,666 - -2.9 180,666 - +0.9 180,666 - +1.0 180,666 - +0.8 180,666 - +1.4 180,666 - -2.4 180,666 - -0.3 180,697 - -0.7 180,766 + CSW01_14815 0.30 -0.7 180,786 + CSW01_14815 0.39 +0.6 180,855 + CSW01_14815 0.71 -2.8 180,863 - CSW01_14815 0.75 -1.4 180,888 - CSW01_14815 0.87 -3.2 180,901 + +0.4 180,923 + -0.5 180,949 + -1.8 180,949 + +0.7 180,949 + -1.5 180,957 - -0.5 180,957 - -3.1 180,957 - -0.6 181,008 - -2.1 181,102 - CSW01_14820 0.24 +0.0 181,160 - CSW01_14820 0.36 -1.3 181,160 - CSW01_14820 0.36 -3.4 181,173 - CSW01_14820 0.39 -2.7 181,225 - CSW01_14820 0.50 -0.2 181,263 + CSW01_14820 0.58 +0.1 181,263 + CSW01_14820 0.58 +1.5 181,263 + CSW01_14820 0.58 -0.5 181,268 + CSW01_14820 0.59 -0.6 181,271 - CSW01_14820 0.59 -2.1 181,271 - CSW01_14820 0.59 +0.5 181,271 - CSW01_14820 0.59 +1.8 181,293 + CSW01_14820 0.64 +1.5 181,301 - CSW01_14820 0.65 -1.1 181,352 + CSW01_14820 0.76 -0.3 181,363 + CSW01_14820 0.78 +2.4 181,420 - +0.4 181,554 + -2.0 181,571 + -0.1 181,572 - -2.3 181,579 - -1.0 181,579 - -1.5 181,579 - -2.4 181,581 - +0.7 181,581 - -3.0 181,858 + -0.9 181,866 - +0.4 181,901 - +1.2
Or see this region's nucleotide sequence