Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14625

Experiment: ICP3_phage_41.1_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14620 and CSW01_14625 are separated by 50 nucleotidesCSW01_14625 and CSW01_14630 overlap by 41 nucleotides CSW01_14620: CSW01_14620 - type VI secretion protein, at 136,061 to 137,326 _14620 CSW01_14625: CSW01_14625 - hypothetical protein, at 137,377 to 137,619 _14625 CSW01_14630: CSW01_14630 - type VI secretion system tip protein VgrG, at 137,579 to 140,632 _14630 Position (kb) 137 138Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 136.408 kb on + strand, within CSW01_14620at 136.421 kb on - strand, within CSW01_14620at 136.421 kb on - strand, within CSW01_14620at 136.474 kb on + strand, within CSW01_14620at 136.482 kb on - strand, within CSW01_14620at 136.500 kb on + strand, within CSW01_14620at 136.513 kb on - strand, within CSW01_14620at 136.521 kb on - strand, within CSW01_14620at 136.555 kb on + strand, within CSW01_14620at 136.560 kb on + strand, within CSW01_14620at 136.560 kb on + strand, within CSW01_14620at 136.560 kb on + strand, within CSW01_14620at 136.560 kb on + strand, within CSW01_14620at 136.675 kb on + strand, within CSW01_14620at 136.680 kb on + strand, within CSW01_14620at 136.680 kb on + strand, within CSW01_14620at 136.688 kb on - strand, within CSW01_14620at 136.703 kb on - strand, within CSW01_14620at 136.768 kb on + strand, within CSW01_14620at 136.776 kb on - strand, within CSW01_14620at 136.866 kb on - strand, within CSW01_14620at 136.983 kb on - strand, within CSW01_14620at 136.996 kb on - strand, within CSW01_14620at 136.997 kb on - strand, within CSW01_14620at 137.136 kb on - strand, within CSW01_14620at 137.144 kb on - strand, within CSW01_14620at 137.165 kb on - strand, within CSW01_14620at 137.189 kb on + strand, within CSW01_14620at 137.189 kb on + strand, within CSW01_14620at 137.189 kb on + strand, within CSW01_14620at 137.197 kb on - strand, within CSW01_14620at 137.197 kb on - strand, within CSW01_14620at 137.197 kb on - strand, within CSW01_14620at 137.199 kb on + strand, within CSW01_14620at 137.199 kb on + strand, within CSW01_14620at 137.207 kb on - strandat 137.207 kb on - strandat 137.342 kb on - strandat 137.408 kb on + strand, within CSW01_14625at 137.417 kb on - strand, within CSW01_14625at 137.606 kb on + strandat 137.614 kb on + strandat 137.682 kb on + strandat 137.683 kb on - strandat 137.700 kb on - strandat 137.700 kb on - strandat 137.717 kb on + strandat 137.740 kb on + strandat 137.820 kb on - strandat 137.850 kb on - strandat 137.977 kb on - strand, within CSW01_14630at 138.015 kb on + strand, within CSW01_14630at 138.046 kb on - strand, within CSW01_14630at 138.073 kb on + strand, within CSW01_14630at 138.101 kb on - strand, within CSW01_14630at 138.182 kb on + strand, within CSW01_14630at 138.185 kb on - strand, within CSW01_14630at 138.220 kb on + strand, within CSW01_14630at 138.249 kb on - strand, within CSW01_14630at 138.249 kb on - strand, within CSW01_14630at 138.270 kb on - strand, within CSW01_14630at 138.317 kb on - strand, within CSW01_14630at 138.317 kb on - strand, within CSW01_14630at 138.317 kb on - strand, within CSW01_14630at 138.328 kb on + strand, within CSW01_14630at 138.328 kb on + strand, within CSW01_14630at 138.328 kb on + strand, within CSW01_14630at 138.328 kb on + strand, within CSW01_14630at 138.328 kb on + strand, within CSW01_14630at 138.336 kb on - strand, within CSW01_14630at 138.336 kb on - strand, within CSW01_14630at 138.336 kb on - strand, within CSW01_14630at 138.336 kb on - strand, within CSW01_14630at 138.336 kb on - strand, within CSW01_14630at 138.336 kb on - strand, within CSW01_14630at 138.471 kb on - strand, within CSW01_14630at 138.479 kb on + strand, within CSW01_14630at 138.479 kb on + strand, within CSW01_14630at 138.479 kb on + strand, within CSW01_14630at 138.479 kb on + strand, within CSW01_14630at 138.495 kb on - strand, within CSW01_14630at 138.588 kb on - strand, within CSW01_14630

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep1
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136,408 + CSW01_14620 0.27 -1.1
136,421 - CSW01_14620 0.28 -1.7
136,421 - CSW01_14620 0.28 +0.3
136,474 + CSW01_14620 0.33 +1.1
136,482 - CSW01_14620 0.33 -0.6
136,500 + CSW01_14620 0.35 -1.0
136,513 - CSW01_14620 0.36 +0.9
136,521 - CSW01_14620 0.36 -3.1
136,555 + CSW01_14620 0.39 +1.4
136,560 + CSW01_14620 0.39 +0.1
136,560 + CSW01_14620 0.39 +0.9
136,560 + CSW01_14620 0.39 -0.2
136,560 + CSW01_14620 0.39 -2.1
136,675 + CSW01_14620 0.48 -1.8
136,680 + CSW01_14620 0.49 +0.0
136,680 + CSW01_14620 0.49 -0.2
136,688 - CSW01_14620 0.50 +1.1
136,703 - CSW01_14620 0.51 -0.9
136,768 + CSW01_14620 0.56 +1.7
136,776 - CSW01_14620 0.56 -0.5
136,866 - CSW01_14620 0.64 -3.4
136,983 - CSW01_14620 0.73 +0.9
136,996 - CSW01_14620 0.74 -0.1
136,997 - CSW01_14620 0.74 +0.1
137,136 - CSW01_14620 0.85 +1.1
137,144 - CSW01_14620 0.86 +1.0
137,165 - CSW01_14620 0.87 +0.2
137,189 + CSW01_14620 0.89 +0.3
137,189 + CSW01_14620 0.89 -2.7
137,189 + CSW01_14620 0.89 +1.1
137,197 - CSW01_14620 0.90 +0.0
137,197 - CSW01_14620 0.90 +0.6
137,197 - CSW01_14620 0.90 +0.5
137,199 + CSW01_14620 0.90 -0.4
137,199 + CSW01_14620 0.90 -2.6
137,207 - +1.3
137,207 - -2.2
137,342 - +1.3
137,408 + CSW01_14625 0.13 -0.6
137,417 - CSW01_14625 0.16 -1.0
137,606 + +0.9
137,614 + +1.3
137,682 + +0.9
137,683 - +0.4
137,700 - +0.5
137,700 - -0.9
137,717 + -1.9
137,740 + -2.1
137,820 - -0.0
137,850 - +0.0
137,977 - CSW01_14630 0.13 +0.5
138,015 + CSW01_14630 0.14 -1.5
138,046 - CSW01_14630 0.15 +0.9
138,073 + CSW01_14630 0.16 -1.6
138,101 - CSW01_14630 0.17 -2.5
138,182 + CSW01_14630 0.20 -2.2
138,185 - CSW01_14630 0.20 -1.5
138,220 + CSW01_14630 0.21 +0.6
138,249 - CSW01_14630 0.22 +0.3
138,249 - CSW01_14630 0.22 +0.4
138,270 - CSW01_14630 0.23 +0.7
138,317 - CSW01_14630 0.24 +1.0
138,317 - CSW01_14630 0.24 +0.1
138,317 - CSW01_14630 0.24 +1.8
138,328 + CSW01_14630 0.25 +2.1
138,328 + CSW01_14630 0.25 -0.8
138,328 + CSW01_14630 0.25 +2.2
138,328 + CSW01_14630 0.25 +1.5
138,328 + CSW01_14630 0.25 -0.4
138,336 - CSW01_14630 0.25 +1.4
138,336 - CSW01_14630 0.25 +1.2
138,336 - CSW01_14630 0.25 -0.5
138,336 - CSW01_14630 0.25 -0.6
138,336 - CSW01_14630 0.25 -1.3
138,336 - CSW01_14630 0.25 -0.0
138,471 - CSW01_14630 0.29 -2.0
138,479 + CSW01_14630 0.29 +1.0
138,479 + CSW01_14630 0.29 +1.9
138,479 + CSW01_14630 0.29 -1.8
138,479 + CSW01_14630 0.29 -0.5
138,495 - CSW01_14630 0.30 +1.2
138,588 - CSW01_14630 0.33 -2.8

Or see this region's nucleotide sequence