Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14565

Experiment: ICP3_phage_41.1_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14555 and CSW01_14560 are separated by 2 nucleotidesCSW01_14560 and CSW01_14565 are separated by 5 nucleotidesCSW01_14565 and CSW01_14570 overlap by 37 nucleotidesCSW01_14570 and CSW01_14575 are separated by 2 nucleotides CSW01_14555: CSW01_14555 - type VI secretion system contractile sheath large subunit, at 117,391 to 118,869 _14555 CSW01_14560: CSW01_14560 - type VI secretion system baseplate subunit TssE, at 118,872 to 119,309 _14560 CSW01_14565: CSW01_14565 - type VI secretion system baseplate subunit TssF, at 119,315 to 121,084 _14565 CSW01_14570: CSW01_14570 - type VI secretion system baseplate subunit TssG, at 121,048 to 122,064 _14570 CSW01_14575: CSW01_14575 - type VI secretion system-associated FHA domain protein TagH, at 122,067 to 123,554 _14575 Position (kb) 119 120 121 122Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 118.324 kb on + strand, within CSW01_14555at 118.459 kb on + strand, within CSW01_14555at 118.469 kb on + strand, within CSW01_14555at 118.469 kb on - strand, within CSW01_14555at 118.544 kb on + strand, within CSW01_14555at 118.600 kb on + strand, within CSW01_14555at 118.687 kb on + strand, within CSW01_14555at 118.713 kb on + strand, within CSW01_14555at 118.751 kb on - strandat 118.887 kb on + strandat 118.895 kb on - strandat 118.895 kb on - strandat 118.895 kb on - strandat 118.895 kb on - strandat 118.937 kb on + strand, within CSW01_14560at 118.937 kb on + strand, within CSW01_14560at 118.957 kb on + strand, within CSW01_14560at 118.963 kb on + strand, within CSW01_14560at 118.971 kb on - strand, within CSW01_14560at 119.004 kb on + strand, within CSW01_14560at 119.092 kb on + strand, within CSW01_14560at 119.092 kb on + strand, within CSW01_14560at 119.100 kb on - strand, within CSW01_14560at 119.134 kb on + strand, within CSW01_14560at 119.154 kb on + strand, within CSW01_14560at 119.171 kb on + strand, within CSW01_14560at 119.179 kb on - strand, within CSW01_14560at 119.189 kb on - strand, within CSW01_14560at 119.189 kb on - strand, within CSW01_14560at 119.199 kb on - strand, within CSW01_14560at 119.206 kb on + strand, within CSW01_14560at 119.303 kb on + strandat 119.311 kb on - strandat 119.311 kb on - strandat 119.367 kb on + strandat 119.368 kb on - strandat 119.427 kb on + strandat 119.522 kb on + strand, within CSW01_14565at 119.561 kb on - strand, within CSW01_14565at 119.571 kb on + strand, within CSW01_14565at 119.708 kb on - strand, within CSW01_14565at 119.710 kb on + strand, within CSW01_14565at 119.746 kb on - strand, within CSW01_14565at 119.797 kb on + strand, within CSW01_14565at 119.811 kb on - strand, within CSW01_14565at 119.811 kb on - strand, within CSW01_14565at 119.811 kb on - strand, within CSW01_14565at 119.811 kb on - strand, within CSW01_14565at 119.811 kb on - strand, within CSW01_14565at 119.834 kb on + strand, within CSW01_14565at 119.834 kb on + strand, within CSW01_14565at 119.853 kb on + strand, within CSW01_14565at 119.966 kb on + strand, within CSW01_14565at 120.056 kb on - strand, within CSW01_14565at 120.074 kb on + strand, within CSW01_14565at 120.180 kb on - strand, within CSW01_14565at 120.336 kb on - strand, within CSW01_14565at 120.381 kb on + strand, within CSW01_14565at 120.382 kb on - strand, within CSW01_14565at 120.437 kb on - strand, within CSW01_14565at 120.505 kb on - strand, within CSW01_14565at 120.552 kb on - strand, within CSW01_14565at 120.592 kb on - strand, within CSW01_14565at 120.689 kb on - strand, within CSW01_14565at 120.720 kb on + strand, within CSW01_14565at 120.728 kb on - strand, within CSW01_14565at 120.728 kb on - strand, within CSW01_14565at 120.745 kb on + strand, within CSW01_14565at 120.756 kb on - strand, within CSW01_14565at 120.756 kb on - strand, within CSW01_14565at 120.756 kb on - strand, within CSW01_14565at 120.758 kb on - strand, within CSW01_14565at 120.814 kb on + strand, within CSW01_14565at 120.832 kb on + strand, within CSW01_14565at 120.967 kb on - strandat 121.050 kb on - strandat 121.068 kb on - strandat 121.104 kb on - strandat 121.108 kb on + strandat 121.108 kb on + strandat 121.116 kb on - strandat 121.201 kb on - strand, within CSW01_14570at 121.203 kb on + strand, within CSW01_14570at 121.232 kb on + strand, within CSW01_14570at 121.232 kb on + strand, within CSW01_14570at 121.232 kb on + strand, within CSW01_14570at 121.245 kb on - strand, within CSW01_14570at 121.301 kb on + strand, within CSW01_14570at 121.309 kb on - strand, within CSW01_14570at 121.309 kb on - strand, within CSW01_14570at 121.309 kb on - strand, within CSW01_14570at 121.319 kb on + strand, within CSW01_14570at 121.364 kb on - strand, within CSW01_14570at 121.369 kb on - strand, within CSW01_14570at 121.509 kb on - strand, within CSW01_14570at 121.511 kb on + strand, within CSW01_14570at 121.513 kb on + strand, within CSW01_14570at 121.513 kb on + strand, within CSW01_14570at 121.530 kb on + strand, within CSW01_14570at 121.544 kb on + strand, within CSW01_14570at 121.544 kb on + strand, within CSW01_14570at 121.544 kb on + strand, within CSW01_14570at 121.544 kb on + strand, within CSW01_14570at 121.544 kb on + strand, within CSW01_14570at 121.544 kb on + strand, within CSW01_14570at 121.552 kb on - strand, within CSW01_14570at 121.552 kb on - strand, within CSW01_14570at 121.552 kb on - strand, within CSW01_14570at 121.552 kb on - strand, within CSW01_14570at 121.644 kb on + strand, within CSW01_14570at 121.705 kb on - strand, within CSW01_14570at 121.737 kb on + strand, within CSW01_14570at 121.921 kb on + strand, within CSW01_14570at 121.929 kb on - strand, within CSW01_14570at 122.072 kb on - strandat 122.072 kb on - strandat 122.082 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep1
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118,324 + CSW01_14555 0.63 -0.2
118,459 + CSW01_14555 0.72 +1.1
118,469 + CSW01_14555 0.73 -1.0
118,469 - CSW01_14555 0.73 +0.2
118,544 + CSW01_14555 0.78 -2.6
118,600 + CSW01_14555 0.82 -0.3
118,687 + CSW01_14555 0.88 +0.6
118,713 + CSW01_14555 0.89 +0.2
118,751 - -1.9
118,887 + -2.5
118,895 - -0.3
118,895 - -1.1
118,895 - +0.0
118,895 - +0.6
118,937 + CSW01_14560 0.15 +0.2
118,937 + CSW01_14560 0.15 -1.1
118,957 + CSW01_14560 0.19 +0.2
118,963 + CSW01_14560 0.21 -0.9
118,971 - CSW01_14560 0.23 +0.3
119,004 + CSW01_14560 0.30 -0.1
119,092 + CSW01_14560 0.50 +1.3
119,092 + CSW01_14560 0.50 -0.4
119,100 - CSW01_14560 0.52 +0.4
119,134 + CSW01_14560 0.60 -1.8
119,154 + CSW01_14560 0.64 +1.4
119,171 + CSW01_14560 0.68 +0.4
119,179 - CSW01_14560 0.70 +0.8
119,189 - CSW01_14560 0.72 -0.1
119,189 - CSW01_14560 0.72 -0.6
119,199 - CSW01_14560 0.75 -2.1
119,206 + CSW01_14560 0.76 +1.1
119,303 + +1.0
119,311 - +0.9
119,311 - +0.8
119,367 + -1.5
119,368 - -1.9
119,427 + +0.3
119,522 + CSW01_14565 0.12 +0.4
119,561 - CSW01_14565 0.14 -0.1
119,571 + CSW01_14565 0.14 -2.1
119,708 - CSW01_14565 0.22 -1.8
119,710 + CSW01_14565 0.22 -1.7
119,746 - CSW01_14565 0.24 +0.9
119,797 + CSW01_14565 0.27 +0.2
119,811 - CSW01_14565 0.28 -2.7
119,811 - CSW01_14565 0.28 -0.0
119,811 - CSW01_14565 0.28 +0.1
119,811 - CSW01_14565 0.28 -3.4
119,811 - CSW01_14565 0.28 +2.3
119,834 + CSW01_14565 0.29 -0.5
119,834 + CSW01_14565 0.29 -0.9
119,853 + CSW01_14565 0.30 +0.9
119,966 + CSW01_14565 0.37 -1.6
120,056 - CSW01_14565 0.42 -0.8
120,074 + CSW01_14565 0.43 +1.0
120,180 - CSW01_14565 0.49 -0.4
120,336 - CSW01_14565 0.58 +1.2
120,381 + CSW01_14565 0.60 +0.6
120,382 - CSW01_14565 0.60 +1.6
120,437 - CSW01_14565 0.63 +1.2
120,505 - CSW01_14565 0.67 +0.4
120,552 - CSW01_14565 0.70 +1.7
120,592 - CSW01_14565 0.72 +1.3
120,689 - CSW01_14565 0.78 +1.3
120,720 + CSW01_14565 0.79 -1.6
120,728 - CSW01_14565 0.80 -3.4
120,728 - CSW01_14565 0.80 +1.4
120,745 + CSW01_14565 0.81 +0.8
120,756 - CSW01_14565 0.81 -2.7
120,756 - CSW01_14565 0.81 +0.2
120,756 - CSW01_14565 0.81 +0.9
120,758 - CSW01_14565 0.82 +1.2
120,814 + CSW01_14565 0.85 -0.8
120,832 + CSW01_14565 0.86 -0.1
120,967 - -1.2
121,050 - -0.1
121,068 - +0.6
121,104 - -3.4
121,108 + +1.9
121,108 + -0.4
121,116 - -3.6
121,201 - CSW01_14570 0.15 +1.0
121,203 + CSW01_14570 0.15 -1.5
121,232 + CSW01_14570 0.18 +0.9
121,232 + CSW01_14570 0.18 -1.8
121,232 + CSW01_14570 0.18 +1.7
121,245 - CSW01_14570 0.19 +0.2
121,301 + CSW01_14570 0.25 -0.4
121,309 - CSW01_14570 0.26 -1.3
121,309 - CSW01_14570 0.26 +0.6
121,309 - CSW01_14570 0.26 -1.5
121,319 + CSW01_14570 0.27 +0.2
121,364 - CSW01_14570 0.31 -2.0
121,369 - CSW01_14570 0.32 +0.9
121,509 - CSW01_14570 0.45 +0.3
121,511 + CSW01_14570 0.46 +1.0
121,513 + CSW01_14570 0.46 -0.5
121,513 + CSW01_14570 0.46 -0.3
121,530 + CSW01_14570 0.47 -1.8
121,544 + CSW01_14570 0.49 -0.1
121,544 + CSW01_14570 0.49 +0.6
121,544 + CSW01_14570 0.49 -2.5
121,544 + CSW01_14570 0.49 +1.0
121,544 + CSW01_14570 0.49 -1.3
121,544 + CSW01_14570 0.49 +0.6
121,552 - CSW01_14570 0.50 +0.4
121,552 - CSW01_14570 0.50 -0.3
121,552 - CSW01_14570 0.50 +2.0
121,552 - CSW01_14570 0.50 -0.8
121,644 + CSW01_14570 0.59 -2.4
121,705 - CSW01_14570 0.65 +0.2
121,737 + CSW01_14570 0.68 +2.3
121,921 + CSW01_14570 0.86 -0.4
121,929 - CSW01_14570 0.87 +1.1
122,072 - -0.7
122,072 - +1.3
122,082 - +0.6

Or see this region's nucleotide sequence