Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14495

Experiment: ICP3_phage_41.1_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14490 and CSW01_14495 are separated by 12 nucleotidesCSW01_14495 and CSW01_14500 are separated by 117 nucleotidesCSW01_14500 and CSW01_14505 are separated by 86 nucleotides CSW01_14490: CSW01_14490 - endo-1,4-beta-xylanase, at 103,160 to 104,383 _14490 CSW01_14495: CSW01_14495 - NUDIX hydrolase, at 104,396 to 105,112 _14495 CSW01_14500: CSW01_14500 - hypothetical protein, at 105,230 to 105,424 _14500 CSW01_14505: CSW01_14505 - nicotinate phosphoribosyltransferase, at 105,511 to 106,818 _14505 Position (kb) 104 105 106Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 103.435 kb on - strand, within CSW01_14490at 103.485 kb on - strand, within CSW01_14490at 103.538 kb on - strand, within CSW01_14490at 103.598 kb on - strand, within CSW01_14490at 103.598 kb on - strand, within CSW01_14490at 103.608 kb on - strand, within CSW01_14490at 103.671 kb on + strand, within CSW01_14490at 103.724 kb on + strand, within CSW01_14490at 103.737 kb on + strand, within CSW01_14490at 103.737 kb on + strand, within CSW01_14490at 103.756 kb on - strand, within CSW01_14490at 103.824 kb on + strand, within CSW01_14490at 103.883 kb on + strand, within CSW01_14490at 103.891 kb on + strand, within CSW01_14490at 103.891 kb on - strand, within CSW01_14490at 103.913 kb on + strand, within CSW01_14490at 103.932 kb on - strand, within CSW01_14490at 103.955 kb on + strand, within CSW01_14490at 103.963 kb on - strand, within CSW01_14490at 103.972 kb on + strand, within CSW01_14490at 103.972 kb on + strand, within CSW01_14490at 103.972 kb on + strand, within CSW01_14490at 103.973 kb on + strand, within CSW01_14490at 103.980 kb on - strand, within CSW01_14490at 103.980 kb on - strand, within CSW01_14490at 103.981 kb on - strand, within CSW01_14490at 103.990 kb on - strand, within CSW01_14490at 103.991 kb on - strand, within CSW01_14490at 104.115 kb on + strand, within CSW01_14490at 104.123 kb on - strand, within CSW01_14490at 104.189 kb on - strand, within CSW01_14490at 104.191 kb on + strand, within CSW01_14490at 104.350 kb on - strandat 104.360 kb on - strandat 104.360 kb on - strandat 104.360 kb on - strandat 104.378 kb on + strandat 104.476 kb on - strand, within CSW01_14495at 104.476 kb on - strand, within CSW01_14495at 104.616 kb on + strand, within CSW01_14495at 104.616 kb on + strand, within CSW01_14495at 104.616 kb on + strand, within CSW01_14495at 104.624 kb on - strand, within CSW01_14495at 104.624 kb on - strand, within CSW01_14495at 104.639 kb on + strand, within CSW01_14495at 104.853 kb on + strand, within CSW01_14495at 104.861 kb on - strand, within CSW01_14495at 105.079 kb on + strandat 105.089 kb on + strandat 105.124 kb on + strandat 105.132 kb on - strandat 105.132 kb on - strandat 105.192 kb on + strandat 105.207 kb on + strandat 105.207 kb on + strandat 105.207 kb on + strandat 105.207 kb on + strandat 105.207 kb on + strandat 105.207 kb on + strandat 105.215 kb on - strandat 105.215 kb on - strandat 105.215 kb on - strandat 105.215 kb on - strandat 105.226 kb on + strandat 105.266 kb on + strand, within CSW01_14500at 105.267 kb on + strand, within CSW01_14500at 105.336 kb on + strand, within CSW01_14500at 105.336 kb on + strand, within CSW01_14500at 105.440 kb on + strandat 105.448 kb on - strandat 105.631 kb on - strandat 105.644 kb on + strand, within CSW01_14505at 105.652 kb on - strand, within CSW01_14505at 105.652 kb on - strand, within CSW01_14505at 105.679 kb on + strand, within CSW01_14505at 105.901 kb on + strand, within CSW01_14505at 105.920 kb on + strand, within CSW01_14505at 105.928 kb on - strand, within CSW01_14505at 105.933 kb on - strand, within CSW01_14505at 105.947 kb on + strand, within CSW01_14505at 105.950 kb on - strand, within CSW01_14505at 105.950 kb on - strand, within CSW01_14505at 105.955 kb on - strand, within CSW01_14505at 105.989 kb on - strand, within CSW01_14505at 106.084 kb on + strand, within CSW01_14505at 106.096 kb on + strand, within CSW01_14505at 106.103 kb on - strand, within CSW01_14505at 106.106 kb on + strand, within CSW01_14505

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep1
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103,435 - CSW01_14490 0.22 +0.7
103,485 - CSW01_14490 0.27 -2.1
103,538 - CSW01_14490 0.31 -2.1
103,598 - CSW01_14490 0.36 +0.5
103,598 - CSW01_14490 0.36 -0.7
103,608 - CSW01_14490 0.37 -2.7
103,671 + CSW01_14490 0.42 +0.9
103,724 + CSW01_14490 0.46 -1.1
103,737 + CSW01_14490 0.47 -0.1
103,737 + CSW01_14490 0.47 +1.2
103,756 - CSW01_14490 0.49 -0.6
103,824 + CSW01_14490 0.54 -2.6
103,883 + CSW01_14490 0.59 -1.1
103,891 + CSW01_14490 0.60 +0.6
103,891 - CSW01_14490 0.60 -0.6
103,913 + CSW01_14490 0.62 -1.9
103,932 - CSW01_14490 0.63 +0.7
103,955 + CSW01_14490 0.65 -1.2
103,963 - CSW01_14490 0.66 +1.9
103,972 + CSW01_14490 0.66 +0.1
103,972 + CSW01_14490 0.66 -0.5
103,972 + CSW01_14490 0.66 +0.4
103,973 + CSW01_14490 0.66 -0.5
103,980 - CSW01_14490 0.67 -1.7
103,980 - CSW01_14490 0.67 +0.7
103,981 - CSW01_14490 0.67 -1.9
103,990 - CSW01_14490 0.68 +1.7
103,991 - CSW01_14490 0.68 +2.3
104,115 + CSW01_14490 0.78 +1.5
104,123 - CSW01_14490 0.79 -0.2
104,189 - CSW01_14490 0.84 -0.7
104,191 + CSW01_14490 0.84 -0.9
104,350 - +0.9
104,360 - +2.1
104,360 - -0.1
104,360 - -1.3
104,378 + +0.3
104,476 - CSW01_14495 0.11 -1.2
104,476 - CSW01_14495 0.11 -0.8
104,616 + CSW01_14495 0.31 +1.5
104,616 + CSW01_14495 0.31 +0.3
104,616 + CSW01_14495 0.31 -0.5
104,624 - CSW01_14495 0.32 +2.1
104,624 - CSW01_14495 0.32 +0.9
104,639 + CSW01_14495 0.34 -3.0
104,853 + CSW01_14495 0.64 +0.1
104,861 - CSW01_14495 0.65 -1.4
105,079 + +1.2
105,089 + -1.1
105,124 + -2.9
105,132 - +1.4
105,132 - -0.5
105,192 + +1.0
105,207 + +0.9
105,207 + +1.1
105,207 + -1.0
105,207 + +0.5
105,207 + +0.3
105,207 + -2.1
105,215 - -0.7
105,215 - +0.7
105,215 - -1.8
105,215 - -1.6
105,226 + -0.1
105,266 + CSW01_14500 0.18 +1.0
105,267 + CSW01_14500 0.19 +1.2
105,336 + CSW01_14500 0.54 +0.6
105,336 + CSW01_14500 0.54 +0.7
105,440 + -0.2
105,448 - +0.9
105,631 - -0.3
105,644 + CSW01_14505 0.10 +0.1
105,652 - CSW01_14505 0.11 +0.3
105,652 - CSW01_14505 0.11 +0.3
105,679 + CSW01_14505 0.13 +0.4
105,901 + CSW01_14505 0.30 -2.5
105,920 + CSW01_14505 0.31 -0.4
105,928 - CSW01_14505 0.32 +1.9
105,933 - CSW01_14505 0.32 -0.1
105,947 + CSW01_14505 0.33 +0.1
105,950 - CSW01_14505 0.34 +0.1
105,950 - CSW01_14505 0.34 -1.2
105,955 - CSW01_14505 0.34 -0.5
105,989 - CSW01_14505 0.37 +0.3
106,084 + CSW01_14505 0.44 +0.3
106,096 + CSW01_14505 0.45 +0.0
106,103 - CSW01_14505 0.45 -2.5
106,106 + CSW01_14505 0.45 -2.4

Or see this region's nucleotide sequence