Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14475

Experiment: ICP3_phage_41.1_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14465 and CSW01_14470 are separated by 229 nucleotidesCSW01_14470 and CSW01_14475 are separated by 170 nucleotidesCSW01_14475 and CSW01_14480 are separated by 500 nucleotides CSW01_14465: CSW01_14465 - EamA/RhaT family transporter, at 99,074 to 99,967 _14465 CSW01_14470: CSW01_14470 - DUF134 domain-containing protein, at 100,197 to 100,493 _14470 CSW01_14475: CSW01_14475 - cobinamide adenolsyltransferase, at 100,664 to 101,293 _14475 CSW01_14480: CSW01_14480 - transcriptional regulator, at 101,794 to 102,150 _14480 Position (kb) 100 101 102Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 99.669 kb on + strand, within CSW01_14465at 99.697 kb on + strand, within CSW01_14465at 99.796 kb on + strand, within CSW01_14465at 99.814 kb on - strand, within CSW01_14465at 99.819 kb on + strand, within CSW01_14465at 99.882 kb on - strandat 99.907 kb on + strandat 99.928 kb on + strandat 99.959 kb on - strandat 100.112 kb on - strandat 100.117 kb on - strandat 100.256 kb on + strand, within CSW01_14470at 100.274 kb on - strand, within CSW01_14470at 100.278 kb on + strand, within CSW01_14470at 100.322 kb on + strand, within CSW01_14470at 100.383 kb on + strand, within CSW01_14470at 100.383 kb on + strand, within CSW01_14470at 100.417 kb on + strand, within CSW01_14470at 100.425 kb on - strand, within CSW01_14470at 100.509 kb on + strandat 100.538 kb on - strandat 100.742 kb on + strand, within CSW01_14475at 100.745 kb on - strand, within CSW01_14475at 100.942 kb on - strand, within CSW01_14475at 100.952 kb on + strand, within CSW01_14475at 100.993 kb on + strand, within CSW01_14475at 101.048 kb on + strand, within CSW01_14475at 101.052 kb on - strand, within CSW01_14475at 101.057 kb on - strand, within CSW01_14475at 101.092 kb on - strand, within CSW01_14475at 101.124 kb on - strand, within CSW01_14475at 101.263 kb on + strandat 101.286 kb on + strandat 101.286 kb on + strandat 101.286 kb on - strandat 101.315 kb on + strandat 101.315 kb on + strandat 101.358 kb on + strandat 101.396 kb on + strandat 101.417 kb on - strandat 101.417 kb on - strandat 101.422 kb on - strandat 101.445 kb on - strandat 101.469 kb on + strandat 101.469 kb on - strandat 101.472 kb on - strandat 101.478 kb on - strandat 101.491 kb on - strandat 101.491 kb on - strandat 101.492 kb on - strandat 101.498 kb on + strandat 101.498 kb on + strandat 101.504 kb on + strandat 101.504 kb on + strandat 101.505 kb on - strandat 101.506 kb on - strandat 101.506 kb on - strandat 101.528 kb on - strandat 101.549 kb on + strandat 101.593 kb on - strandat 101.842 kb on + strand, within CSW01_14480at 101.842 kb on + strand, within CSW01_14480at 101.843 kb on + strand, within CSW01_14480at 101.843 kb on + strand, within CSW01_14480at 101.851 kb on - strand, within CSW01_14480at 101.851 kb on - strand, within CSW01_14480at 101.851 kb on - strand, within CSW01_14480at 101.882 kb on + strand, within CSW01_14480at 101.882 kb on + strand, within CSW01_14480at 101.882 kb on + strand, within CSW01_14480at 101.882 kb on + strand, within CSW01_14480at 101.882 kb on + strand, within CSW01_14480at 101.882 kb on + strand, within CSW01_14480at 101.890 kb on - strand, within CSW01_14480at 101.890 kb on - strand, within CSW01_14480at 101.890 kb on - strand, within CSW01_14480at 101.890 kb on - strand, within CSW01_14480at 101.890 kb on - strand, within CSW01_14480at 101.890 kb on - strand, within CSW01_14480at 101.890 kb on - strand, within CSW01_14480at 101.890 kb on - strand, within CSW01_14480at 101.890 kb on - strand, within CSW01_14480at 101.896 kb on + strand, within CSW01_14480at 101.896 kb on + strand, within CSW01_14480at 101.906 kb on + strand, within CSW01_14480at 101.914 kb on - strand, within CSW01_14480at 101.920 kb on + strand, within CSW01_14480at 101.931 kb on + strand, within CSW01_14480at 101.940 kb on - strand, within CSW01_14480at 101.940 kb on - strand, within CSW01_14480at 101.978 kb on + strand, within CSW01_14480at 101.978 kb on + strand, within CSW01_14480at 101.978 kb on + strand, within CSW01_14480at 101.978 kb on + strand, within CSW01_14480at 101.978 kb on + strand, within CSW01_14480at 101.978 kb on + strand, within CSW01_14480at 101.986 kb on - strand, within CSW01_14480at 101.986 kb on - strand, within CSW01_14480at 101.986 kb on - strand, within CSW01_14480at 101.986 kb on - strand, within CSW01_14480at 101.991 kb on + strand, within CSW01_14480at 101.995 kb on - strand, within CSW01_14480at 101.995 kb on - strand, within CSW01_14480at 101.995 kb on - strand, within CSW01_14480at 102.006 kb on + strand, within CSW01_14480at 102.011 kb on + strand, within CSW01_14480at 102.014 kb on - strand, within CSW01_14480at 102.024 kb on + strand, within CSW01_14480at 102.028 kb on + strand, within CSW01_14480at 102.032 kb on - strand, within CSW01_14480at 102.036 kb on + strand, within CSW01_14480at 102.057 kb on + strand, within CSW01_14480at 102.062 kb on + strand, within CSW01_14480at 102.067 kb on + strand, within CSW01_14480at 102.086 kb on + strand, within CSW01_14480at 102.086 kb on + strand, within CSW01_14480at 102.086 kb on + strand, within CSW01_14480at 102.094 kb on - strand, within CSW01_14480at 102.175 kb on - strandat 102.207 kb on + strandat 102.215 kb on - strandat 102.225 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep1
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99,669 + CSW01_14465 0.67 +0.8
99,697 + CSW01_14465 0.70 +0.7
99,796 + CSW01_14465 0.81 +0.5
99,814 - CSW01_14465 0.83 +1.3
99,819 + CSW01_14465 0.83 -1.9
99,882 - -2.5
99,907 + -1.4
99,928 + +0.4
99,959 - -0.4
100,112 - -1.8
100,117 - +0.9
100,256 + CSW01_14470 0.20 -0.3
100,274 - CSW01_14470 0.26 -1.4
100,278 + CSW01_14470 0.27 +0.0
100,322 + CSW01_14470 0.42 -0.4
100,383 + CSW01_14470 0.63 +0.9
100,383 + CSW01_14470 0.63 -2.0
100,417 + CSW01_14470 0.74 -2.3
100,425 - CSW01_14470 0.77 +0.9
100,509 + -0.1
100,538 - -0.6
100,742 + CSW01_14475 0.12 -1.8
100,745 - CSW01_14475 0.13 +0.7
100,942 - CSW01_14475 0.44 +1.5
100,952 + CSW01_14475 0.46 -1.1
100,993 + CSW01_14475 0.52 +2.6
101,048 + CSW01_14475 0.61 +0.3
101,052 - CSW01_14475 0.62 -2.4
101,057 - CSW01_14475 0.62 +0.9
101,092 - CSW01_14475 0.68 -0.0
101,124 - CSW01_14475 0.73 -1.2
101,263 + -2.0
101,286 + -3.4
101,286 + +0.4
101,286 - -1.0
101,315 + -3.4
101,315 + -0.5
101,358 + -0.8
101,396 + +0.6
101,417 - +0.8
101,417 - +1.8
101,422 - +0.1
101,445 - -0.1
101,469 + +0.5
101,469 - -0.5
101,472 - +0.9
101,478 - +0.4
101,491 - +0.8
101,491 - -1.0
101,492 - +0.8
101,498 + -0.6
101,498 + -2.3
101,504 + -2.1
101,504 + -1.9
101,505 - -1.6
101,506 - -1.3
101,506 - -2.6
101,528 - +2.6
101,549 + -0.4
101,593 - +1.2
101,842 + CSW01_14480 0.13 -0.3
101,842 + CSW01_14480 0.13 +0.5
101,843 + CSW01_14480 0.14 -1.1
101,843 + CSW01_14480 0.14 +0.1
101,851 - CSW01_14480 0.16 -0.4
101,851 - CSW01_14480 0.16 +1.0
101,851 - CSW01_14480 0.16 +1.0
101,882 + CSW01_14480 0.25 +0.5
101,882 + CSW01_14480 0.25 -1.6
101,882 + CSW01_14480 0.25 -2.1
101,882 + CSW01_14480 0.25 +0.7
101,882 + CSW01_14480 0.25 -0.4
101,882 + CSW01_14480 0.25 -0.2
101,890 - CSW01_14480 0.27 -1.1
101,890 - CSW01_14480 0.27 +0.7
101,890 - CSW01_14480 0.27 -0.1
101,890 - CSW01_14480 0.27 -0.5
101,890 - CSW01_14480 0.27 +0.0
101,890 - CSW01_14480 0.27 +1.1
101,890 - CSW01_14480 0.27 -2.7
101,890 - CSW01_14480 0.27 -0.4
101,890 - CSW01_14480 0.27 -1.3
101,896 + CSW01_14480 0.29 +0.5
101,896 + CSW01_14480 0.29 -0.9
101,906 + CSW01_14480 0.31 -1.0
101,914 - CSW01_14480 0.34 +1.1
101,920 + CSW01_14480 0.35 +0.4
101,931 + CSW01_14480 0.38 +0.1
101,940 - CSW01_14480 0.41 -0.5
101,940 - CSW01_14480 0.41 -2.8
101,978 + CSW01_14480 0.52 +0.1
101,978 + CSW01_14480 0.52 +1.2
101,978 + CSW01_14480 0.52 -0.8
101,978 + CSW01_14480 0.52 -1.6
101,978 + CSW01_14480 0.52 +0.5
101,978 + CSW01_14480 0.52 +0.4
101,986 - CSW01_14480 0.54 -0.0
101,986 - CSW01_14480 0.54 +0.1
101,986 - CSW01_14480 0.54 -3.9
101,986 - CSW01_14480 0.54 -0.2
101,991 + CSW01_14480 0.55 -1.8
101,995 - CSW01_14480 0.56 -0.8
101,995 - CSW01_14480 0.56 +1.4
101,995 - CSW01_14480 0.56 +0.5
102,006 + CSW01_14480 0.59 -3.0
102,011 + CSW01_14480 0.61 -2.5
102,014 - CSW01_14480 0.62 -0.6
102,024 + CSW01_14480 0.64 -1.8
102,028 + CSW01_14480 0.66 +0.3
102,032 - CSW01_14480 0.67 +1.1
102,036 + CSW01_14480 0.68 -3.1
102,057 + CSW01_14480 0.74 -0.9
102,062 + CSW01_14480 0.75 +0.6
102,067 + CSW01_14480 0.76 +0.0
102,086 + CSW01_14480 0.82 +0.9
102,086 + CSW01_14480 0.82 -0.4
102,086 + CSW01_14480 0.82 +1.7
102,094 - CSW01_14480 0.84 +0.3
102,175 - +0.4
102,207 + -2.7
102,215 - -1.0
102,225 - +1.4

Or see this region's nucleotide sequence