Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14405

Experiment: ICP3_phage_41.1_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14390 and CSW01_14395 overlap by 4 nucleotidesCSW01_14395 and CSW01_14400 overlap by 62 nucleotidesCSW01_14400 and CSW01_14405 are separated by 163 nucleotidesCSW01_14405 and CSW01_14410 are separated by 434 nucleotides CSW01_14390: CSW01_14390 - GGDEF domain-containing protein, at 82,991 to 84,091 _14390 CSW01_14395: CSW01_14395 - oxidoreductase, at 84,088 to 84,555 _14395 CSW01_14400: CSW01_14400 - hypothetical protein, at 84,494 to 84,682 _14400 CSW01_14405: CSW01_14405 - hypothetical protein, at 84,846 to 86,222 _14405 CSW01_14410: CSW01_14410 - sodium-independent anion transporter, at 86,657 to 88,318 _14410 Position (kb) 84 85 86 87Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 83.875 kb on + strand, within CSW01_14390at 83.875 kb on + strand, within CSW01_14390at 83.883 kb on - strand, within CSW01_14390at 83.917 kb on + strand, within CSW01_14390at 83.955 kb on + strand, within CSW01_14390at 83.955 kb on + strand, within CSW01_14390at 83.955 kb on + strand, within CSW01_14390at 83.963 kb on - strand, within CSW01_14390at 83.963 kb on - strand, within CSW01_14390at 83.963 kb on - strand, within CSW01_14390at 83.963 kb on - strand, within CSW01_14390at 83.963 kb on - strand, within CSW01_14390at 84.029 kb on + strandat 84.178 kb on + strand, within CSW01_14395at 84.178 kb on + strand, within CSW01_14395at 84.178 kb on + strand, within CSW01_14395at 84.320 kb on + strand, within CSW01_14395at 84.363 kb on + strand, within CSW01_14395at 84.363 kb on + strand, within CSW01_14395at 84.395 kb on + strand, within CSW01_14395at 84.432 kb on + strand, within CSW01_14395at 84.440 kb on - strand, within CSW01_14395at 84.515 kb on + strandat 84.515 kb on + strandat 84.538 kb on - strandat 84.572 kb on - strand, within CSW01_14400at 84.580 kb on - strand, within CSW01_14400at 84.580 kb on - strand, within CSW01_14400at 84.582 kb on - strand, within CSW01_14400at 84.582 kb on - strand, within CSW01_14400at 84.844 kb on + strandat 84.852 kb on - strandat 84.951 kb on + strandat 84.956 kb on + strandat 84.956 kb on + strandat 84.956 kb on + strandat 84.991 kb on + strand, within CSW01_14405at 85.188 kb on + strand, within CSW01_14405at 85.212 kb on + strand, within CSW01_14405at 85.216 kb on + strand, within CSW01_14405at 85.220 kb on - strand, within CSW01_14405at 85.228 kb on + strand, within CSW01_14405at 85.254 kb on + strand, within CSW01_14405at 85.285 kb on + strand, within CSW01_14405at 85.417 kb on + strand, within CSW01_14405at 85.454 kb on - strand, within CSW01_14405at 85.480 kb on + strand, within CSW01_14405at 85.481 kb on - strand, within CSW01_14405at 85.517 kb on + strand, within CSW01_14405at 85.570 kb on + strand, within CSW01_14405at 85.611 kb on + strand, within CSW01_14405at 85.761 kb on + strand, within CSW01_14405at 85.904 kb on + strand, within CSW01_14405at 85.924 kb on + strand, within CSW01_14405at 86.037 kb on - strand, within CSW01_14405at 86.070 kb on + strand, within CSW01_14405at 86.073 kb on - strand, within CSW01_14405at 86.073 kb on - strand, within CSW01_14405at 86.137 kb on - strandat 86.144 kb on + strandat 86.184 kb on - strandat 86.195 kb on + strandat 86.195 kb on + strandat 86.195 kb on + strandat 86.195 kb on + strandat 86.197 kb on - strandat 86.203 kb on - strandat 86.203 kb on - strandat 86.203 kb on - strandat 86.203 kb on - strandat 86.203 kb on - strandat 86.251 kb on - strandat 86.520 kb on + strandat 86.545 kb on - strandat 86.592 kb on + strandat 86.600 kb on - strandat 86.618 kb on - strandat 86.674 kb on - strandat 86.684 kb on + strandat 86.786 kb on - strandat 86.828 kb on + strand, within CSW01_14410at 86.869 kb on - strand, within CSW01_14410at 86.917 kb on + strand, within CSW01_14410at 86.946 kb on - strand, within CSW01_14410at 86.972 kb on + strand, within CSW01_14410at 87.007 kb on + strand, within CSW01_14410at 87.038 kb on + strand, within CSW01_14410at 87.041 kb on + strand, within CSW01_14410at 87.041 kb on + strand, within CSW01_14410at 87.098 kb on + strand, within CSW01_14410at 87.106 kb on - strand, within CSW01_14410at 87.106 kb on - strand, within CSW01_14410at 87.106 kb on - strand, within CSW01_14410at 87.160 kb on + strand, within CSW01_14410at 87.183 kb on - strand, within CSW01_14410at 87.212 kb on - strand, within CSW01_14410at 87.212 kb on - strand, within CSW01_14410

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep1
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83,875 + CSW01_14390 0.80 +0.3
83,875 + CSW01_14390 0.80 +3.3
83,883 - CSW01_14390 0.81 -1.5
83,917 + CSW01_14390 0.84 +0.9
83,955 + CSW01_14390 0.88 -0.2
83,955 + CSW01_14390 0.88 -1.1
83,955 + CSW01_14390 0.88 +0.9
83,963 - CSW01_14390 0.88 -1.5
83,963 - CSW01_14390 0.88 -0.7
83,963 - CSW01_14390 0.88 -2.8
83,963 - CSW01_14390 0.88 +0.6
83,963 - CSW01_14390 0.88 +1.0
84,029 + +0.4
84,178 + CSW01_14395 0.19 -1.0
84,178 + CSW01_14395 0.19 -2.5
84,178 + CSW01_14395 0.19 +0.9
84,320 + CSW01_14395 0.50 +0.7
84,363 + CSW01_14395 0.59 +0.8
84,363 + CSW01_14395 0.59 -3.5
84,395 + CSW01_14395 0.66 +0.4
84,432 + CSW01_14395 0.74 -4.9
84,440 - CSW01_14395 0.75 -1.4
84,515 + +1.5
84,515 + +0.7
84,538 - -1.2
84,572 - CSW01_14400 0.41 +0.9
84,580 - CSW01_14400 0.46 -0.2
84,580 - CSW01_14400 0.46 +0.1
84,582 - CSW01_14400 0.47 +0.7
84,582 - CSW01_14400 0.47 +0.6
84,844 + -0.1
84,852 - -0.1
84,951 + +0.4
84,956 + +2.4
84,956 + +0.4
84,956 + +0.4
84,991 + CSW01_14405 0.11 +0.6
85,188 + CSW01_14405 0.25 -1.8
85,212 + CSW01_14405 0.27 -0.9
85,216 + CSW01_14405 0.27 +0.4
85,220 - CSW01_14405 0.27 -3.8
85,228 + CSW01_14405 0.28 -3.0
85,254 + CSW01_14405 0.30 +1.5
85,285 + CSW01_14405 0.32 +0.9
85,417 + CSW01_14405 0.41 -2.0
85,454 - CSW01_14405 0.44 -1.1
85,480 + CSW01_14405 0.46 +1.0
85,481 - CSW01_14405 0.46 -1.3
85,517 + CSW01_14405 0.49 -0.8
85,570 + CSW01_14405 0.53 -0.1
85,611 + CSW01_14405 0.56 -0.5
85,761 + CSW01_14405 0.66 -0.6
85,904 + CSW01_14405 0.77 +1.7
85,924 + CSW01_14405 0.78 +0.2
86,037 - CSW01_14405 0.86 -3.5
86,070 + CSW01_14405 0.89 -0.3
86,073 - CSW01_14405 0.89 -0.3
86,073 - CSW01_14405 0.89 +0.2
86,137 - +0.7
86,144 + -1.5
86,184 - +0.8
86,195 + +0.4
86,195 + -0.2
86,195 + -0.9
86,195 + +0.8
86,197 - -0.1
86,203 - -1.6
86,203 - +0.8
86,203 - +0.4
86,203 - -2.7
86,203 - +0.4
86,251 - -3.1
86,520 + -0.4
86,545 - -0.5
86,592 + -2.7
86,600 - +1.0
86,618 - +0.1
86,674 - -0.4
86,684 + +0.1
86,786 - +1.1
86,828 + CSW01_14410 0.10 +0.8
86,869 - CSW01_14410 0.13 +0.3
86,917 + CSW01_14410 0.16 -0.7
86,946 - CSW01_14410 0.17 +0.5
86,972 + CSW01_14410 0.19 +0.2
87,007 + CSW01_14410 0.21 -0.7
87,038 + CSW01_14410 0.23 +0.1
87,041 + CSW01_14410 0.23 +0.2
87,041 + CSW01_14410 0.23 -0.3
87,098 + CSW01_14410 0.27 -0.8
87,106 - CSW01_14410 0.27 +0.0
87,106 - CSW01_14410 0.27 -2.5
87,106 - CSW01_14410 0.27 +1.5
87,160 + CSW01_14410 0.30 -2.1
87,183 - CSW01_14410 0.32 +1.7
87,212 - CSW01_14410 0.33 +0.6
87,212 - CSW01_14410 0.33 +0.2

Or see this region's nucleotide sequence