Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14185

Experiment: ICP3_phage_41.1_MOI_rep1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_14180 and CSW01_14185 are separated by 431 nucleotidesCSW01_14185 and CSW01_14190 are separated by 21 nucleotidesCSW01_14190 and CSW01_14195 are separated by 89 nucleotides CSW01_14180: CSW01_14180 - hypothetical protein, at 31,967 to 32,602 _14180 CSW01_14185: CSW01_14185 - chitinase, at 33,034 to 35,583 _14185 CSW01_14190: CSW01_14190 - hypothetical protein, at 35,605 to 35,859 _14190 CSW01_14195: CSW01_14195 - IclR family transcriptional regulator, at 35,949 to 36,683 _14195 Position (kb) 33 34 35 36Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 32.088 kb on + strand, within CSW01_14180at 32.088 kb on + strand, within CSW01_14180at 32.112 kb on - strand, within CSW01_14180at 32.114 kb on + strand, within CSW01_14180at 32.122 kb on - strand, within CSW01_14180at 32.244 kb on + strand, within CSW01_14180at 32.476 kb on + strand, within CSW01_14180at 32.476 kb on + strand, within CSW01_14180at 32.484 kb on - strand, within CSW01_14180at 32.544 kb on - strandat 32.588 kb on - strandat 32.588 kb on - strandat 32.596 kb on - strandat 32.634 kb on + strandat 32.677 kb on + strandat 32.677 kb on + strandat 32.686 kb on - strandat 33.068 kb on - strandat 33.189 kb on - strandat 33.196 kb on + strandat 33.238 kb on - strandat 33.284 kb on + strandat 33.292 kb on - strand, within CSW01_14185at 33.292 kb on - strand, within CSW01_14185at 33.342 kb on + strand, within CSW01_14185at 33.342 kb on + strand, within CSW01_14185at 33.348 kb on + strand, within CSW01_14185at 33.442 kb on - strand, within CSW01_14185at 33.447 kb on + strand, within CSW01_14185at 33.455 kb on - strand, within CSW01_14185at 33.486 kb on + strand, within CSW01_14185at 33.486 kb on + strand, within CSW01_14185at 33.488 kb on - strand, within CSW01_14185at 33.494 kb on - strand, within CSW01_14185at 33.494 kb on - strand, within CSW01_14185at 33.494 kb on - strand, within CSW01_14185at 33.494 kb on - strand, within CSW01_14185at 33.494 kb on - strand, within CSW01_14185at 33.494 kb on - strand, within CSW01_14185at 33.494 kb on - strand, within CSW01_14185at 33.532 kb on + strand, within CSW01_14185at 33.572 kb on + strand, within CSW01_14185at 33.577 kb on + strand, within CSW01_14185at 33.577 kb on + strand, within CSW01_14185at 33.613 kb on - strand, within CSW01_14185at 33.681 kb on + strand, within CSW01_14185at 33.689 kb on - strand, within CSW01_14185at 33.689 kb on - strand, within CSW01_14185at 33.689 kb on - strand, within CSW01_14185at 33.689 kb on - strand, within CSW01_14185at 33.728 kb on - strand, within CSW01_14185at 33.768 kb on - strand, within CSW01_14185at 33.864 kb on + strand, within CSW01_14185at 33.874 kb on + strand, within CSW01_14185at 34.035 kb on + strand, within CSW01_14185at 34.053 kb on - strand, within CSW01_14185at 34.060 kb on - strand, within CSW01_14185at 34.158 kb on - strand, within CSW01_14185at 34.170 kb on - strand, within CSW01_14185at 34.191 kb on - strand, within CSW01_14185at 34.191 kb on - strand, within CSW01_14185at 34.191 kb on - strand, within CSW01_14185at 34.191 kb on - strand, within CSW01_14185at 34.191 kb on - strand, within CSW01_14185at 34.249 kb on + strand, within CSW01_14185at 34.249 kb on + strand, within CSW01_14185at 34.257 kb on - strand, within CSW01_14185at 34.274 kb on + strand, within CSW01_14185at 34.282 kb on - strand, within CSW01_14185at 34.282 kb on - strand, within CSW01_14185at 34.352 kb on + strand, within CSW01_14185at 34.411 kb on + strand, within CSW01_14185at 34.411 kb on + strand, within CSW01_14185at 34.411 kb on + strand, within CSW01_14185at 34.419 kb on - strand, within CSW01_14185at 34.419 kb on - strand, within CSW01_14185at 34.431 kb on - strand, within CSW01_14185at 34.441 kb on - strand, within CSW01_14185at 34.502 kb on - strand, within CSW01_14185at 34.542 kb on + strand, within CSW01_14185at 34.550 kb on - strand, within CSW01_14185at 34.636 kb on + strand, within CSW01_14185at 34.644 kb on + strand, within CSW01_14185at 34.729 kb on + strand, within CSW01_14185at 34.778 kb on - strand, within CSW01_14185at 34.859 kb on + strand, within CSW01_14185at 34.862 kb on - strand, within CSW01_14185at 34.908 kb on + strand, within CSW01_14185at 34.920 kb on - strand, within CSW01_14185at 34.954 kb on - strand, within CSW01_14185at 34.957 kb on + strand, within CSW01_14185at 34.982 kb on + strand, within CSW01_14185at 34.990 kb on - strand, within CSW01_14185at 34.990 kb on - strand, within CSW01_14185at 35.063 kb on - strand, within CSW01_14185at 35.078 kb on + strand, within CSW01_14185at 35.091 kb on - strand, within CSW01_14185at 35.117 kb on - strand, within CSW01_14185at 35.124 kb on - strand, within CSW01_14185at 35.160 kb on + strand, within CSW01_14185at 35.179 kb on - strand, within CSW01_14185at 35.189 kb on + strand, within CSW01_14185at 35.210 kb on - strand, within CSW01_14185at 35.307 kb on - strand, within CSW01_14185at 35.316 kb on - strand, within CSW01_14185at 35.365 kb on + strandat 35.373 kb on - strandat 35.442 kb on + strandat 35.442 kb on + strandat 35.450 kb on - strandat 35.450 kb on - strandat 35.466 kb on + strandat 35.499 kb on - strandat 35.535 kb on + strandat 35.561 kb on - strandat 35.570 kb on + strandat 35.570 kb on + strandat 35.591 kb on + strandat 35.591 kb on + strandat 35.591 kb on + strandat 35.599 kb on - strandat 35.599 kb on - strandat 35.599 kb on - strandat 35.601 kb on + strandat 35.637 kb on + strand, within CSW01_14190at 35.637 kb on + strand, within CSW01_14190at 35.645 kb on - strand, within CSW01_14190at 35.647 kb on + strand, within CSW01_14190at 35.647 kb on + strand, within CSW01_14190at 35.657 kb on + strand, within CSW01_14190at 35.704 kb on - strand, within CSW01_14190at 35.777 kb on + strand, within CSW01_14190at 35.785 kb on - strand, within CSW01_14190at 35.926 kb on + strandat 35.938 kb on + strandat 36.225 kb on + strand, within CSW01_14195at 36.225 kb on + strand, within CSW01_14195at 36.225 kb on + strand, within CSW01_14195at 36.233 kb on - strand, within CSW01_14195at 36.233 kb on - strand, within CSW01_14195at 36.233 kb on - strand, within CSW01_14195at 36.235 kb on - strand, within CSW01_14195at 36.365 kb on + strand, within CSW01_14195at 36.365 kb on + strand, within CSW01_14195at 36.373 kb on - strand, within CSW01_14195at 36.373 kb on - strand, within CSW01_14195at 36.406 kb on - strand, within CSW01_14195at 36.455 kb on - strand, within CSW01_14195at 36.493 kb on + strand, within CSW01_14195at 36.542 kb on + strand, within CSW01_14195at 36.570 kb on + strand, within CSW01_14195at 36.578 kb on - strand, within CSW01_14195

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep1
remove
32,088 + CSW01_14180 0.19 +0.8
32,088 + CSW01_14180 0.19 +0.1
32,112 - CSW01_14180 0.23 +0.0
32,114 + CSW01_14180 0.23 +0.7
32,122 - CSW01_14180 0.24 +1.5
32,244 + CSW01_14180 0.44 -0.8
32,476 + CSW01_14180 0.80 +0.8
32,476 + CSW01_14180 0.80 -2.2
32,484 - CSW01_14180 0.81 +0.5
32,544 - -0.0
32,588 - -2.6
32,588 - +0.5
32,596 - +0.4
32,634 + +0.4
32,677 + -2.1
32,677 + -2.0
32,686 - -1.4
33,068 - -2.6
33,189 - +0.5
33,196 + -2.0
33,238 - +0.8
33,284 + +0.7
33,292 - CSW01_14185 0.10 -1.2
33,292 - CSW01_14185 0.10 +0.4
33,342 + CSW01_14185 0.12 -1.5
33,342 + CSW01_14185 0.12 +1.1
33,348 + CSW01_14185 0.12 +1.1
33,442 - CSW01_14185 0.16 +1.6
33,447 + CSW01_14185 0.16 -1.9
33,455 - CSW01_14185 0.17 +0.9
33,486 + CSW01_14185 0.18 -0.1
33,486 + CSW01_14185 0.18 -0.3
33,488 - CSW01_14185 0.18 -0.1
33,494 - CSW01_14185 0.18 +0.9
33,494 - CSW01_14185 0.18 -0.2
33,494 - CSW01_14185 0.18 +0.2
33,494 - CSW01_14185 0.18 +0.4
33,494 - CSW01_14185 0.18 -1.7
33,494 - CSW01_14185 0.18 -0.7
33,494 - CSW01_14185 0.18 +2.1
33,532 + CSW01_14185 0.20 +0.4
33,572 + CSW01_14185 0.21 -2.7
33,577 + CSW01_14185 0.21 -0.7
33,577 + CSW01_14185 0.21 +1.1
33,613 - CSW01_14185 0.23 -0.1
33,681 + CSW01_14185 0.25 +1.7
33,689 - CSW01_14185 0.26 +0.8
33,689 - CSW01_14185 0.26 -3.6
33,689 - CSW01_14185 0.26 -0.3
33,689 - CSW01_14185 0.26 +0.5
33,728 - CSW01_14185 0.27 +0.5
33,768 - CSW01_14185 0.29 +1.4
33,864 + CSW01_14185 0.33 +0.2
33,874 + CSW01_14185 0.33 -1.6
34,035 + CSW01_14185 0.39 -0.0
34,053 - CSW01_14185 0.40 +0.8
34,060 - CSW01_14185 0.40 +1.4
34,158 - CSW01_14185 0.44 +1.4
34,170 - CSW01_14185 0.45 +1.4
34,191 - CSW01_14185 0.45 -0.8
34,191 - CSW01_14185 0.45 -0.3
34,191 - CSW01_14185 0.45 -0.0
34,191 - CSW01_14185 0.45 -0.6
34,191 - CSW01_14185 0.45 -0.5
34,249 + CSW01_14185 0.48 +0.6
34,249 + CSW01_14185 0.48 -1.6
34,257 - CSW01_14185 0.48 -3.4
34,274 + CSW01_14185 0.49 +0.7
34,282 - CSW01_14185 0.49 +1.6
34,282 - CSW01_14185 0.49 +0.5
34,352 + CSW01_14185 0.52 +0.9
34,411 + CSW01_14185 0.54 +1.9
34,411 + CSW01_14185 0.54 +1.3
34,411 + CSW01_14185 0.54 +2.7
34,419 - CSW01_14185 0.54 -0.7
34,419 - CSW01_14185 0.54 -0.2
34,431 - CSW01_14185 0.55 +0.1
34,441 - CSW01_14185 0.55 -0.8
34,502 - CSW01_14185 0.58 +0.1
34,542 + CSW01_14185 0.59 -0.1
34,550 - CSW01_14185 0.59 -3.4
34,636 + CSW01_14185 0.63 +0.1
34,644 + CSW01_14185 0.63 +0.5
34,729 + CSW01_14185 0.66 +0.1
34,778 - CSW01_14185 0.68 +1.4
34,859 + CSW01_14185 0.72 +0.1
34,862 - CSW01_14185 0.72 +0.7
34,908 + CSW01_14185 0.73 +1.8
34,920 - CSW01_14185 0.74 +0.4
34,954 - CSW01_14185 0.75 -2.9
34,957 + CSW01_14185 0.75 +1.0
34,982 + CSW01_14185 0.76 -2.7
34,990 - CSW01_14185 0.77 -1.7
34,990 - CSW01_14185 0.77 -1.9
35,063 - CSW01_14185 0.80 +0.2
35,078 + CSW01_14185 0.80 -2.6
35,091 - CSW01_14185 0.81 +0.8
35,117 - CSW01_14185 0.82 -2.5
35,124 - CSW01_14185 0.82 +0.8
35,160 + CSW01_14185 0.83 +1.3
35,179 - CSW01_14185 0.84 -0.8
35,189 + CSW01_14185 0.85 +1.0
35,210 - CSW01_14185 0.85 -0.1
35,307 - CSW01_14185 0.89 +0.5
35,316 - CSW01_14185 0.89 +0.4
35,365 + +1.3
35,373 - -1.5
35,442 + +0.9
35,442 + -3.1
35,450 - +1.6
35,450 - -3.7
35,466 + +1.0
35,499 - -0.5
35,535 + +0.3
35,561 - -0.2
35,570 + +0.9
35,570 + -1.9
35,591 + +1.2
35,591 + +0.2
35,591 + +1.9
35,599 - +0.0
35,599 - +2.4
35,599 - -0.1
35,601 + -3.1
35,637 + CSW01_14190 0.13 -1.0
35,637 + CSW01_14190 0.13 +1.6
35,645 - CSW01_14190 0.16 +0.8
35,647 + CSW01_14190 0.16 +0.6
35,647 + CSW01_14190 0.16 +0.7
35,657 + CSW01_14190 0.20 -0.2
35,704 - CSW01_14190 0.39 +0.8
35,777 + CSW01_14190 0.67 -1.5
35,785 - CSW01_14190 0.71 +0.0
35,926 + +1.0
35,938 + -0.6
36,225 + CSW01_14195 0.38 -0.8
36,225 + CSW01_14195 0.38 -1.9
36,225 + CSW01_14195 0.38 +0.2
36,233 - CSW01_14195 0.39 +1.4
36,233 - CSW01_14195 0.39 +0.3
36,233 - CSW01_14195 0.39 +1.9
36,235 - CSW01_14195 0.39 +1.9
36,365 + CSW01_14195 0.57 -1.9
36,365 + CSW01_14195 0.57 -0.3
36,373 - CSW01_14195 0.58 -1.3
36,373 - CSW01_14195 0.58 -2.5
36,406 - CSW01_14195 0.62 +0.4
36,455 - CSW01_14195 0.69 -0.7
36,493 + CSW01_14195 0.74 -1.5
36,542 + CSW01_14195 0.81 +0.1
36,570 + CSW01_14195 0.84 -0.3
36,578 - CSW01_14195 0.86 +0.1

Or see this region's nucleotide sequence