Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14165

Experiment: ICP3_phage_41.1_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14155 and CSW01_14160 are separated by 102 nucleotidesCSW01_14160 and CSW01_14165 are separated by 172 nucleotidesCSW01_14165 and CSW01_14170 are separated by 115 nucleotides CSW01_14155: CSW01_14155 - hypothetical protein, at 26,652 to 27,380 _14155 CSW01_14160: CSW01_14160 - glutathione S-transferase, at 27,483 to 27,884 _14160 CSW01_14165: CSW01_14165 - fucose 4-O-acetylase, at 28,057 to 29,097 _14165 CSW01_14170: CSW01_14170 - AEC family transporter, at 29,213 to 30,205 _14170 Position (kb) 28 29 30Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 27.380 kb on + strandat 27.388 kb on - strandat 27.448 kb on - strandat 27.490 kb on + strandat 27.490 kb on + strandat 27.495 kb on + strandat 27.495 kb on + strandat 27.495 kb on + strandat 27.596 kb on - strand, within CSW01_14160at 27.623 kb on + strand, within CSW01_14160at 27.623 kb on + strand, within CSW01_14160at 27.631 kb on - strand, within CSW01_14160at 27.631 kb on - strand, within CSW01_14160at 27.693 kb on + strand, within CSW01_14160at 27.693 kb on - strand, within CSW01_14160at 27.709 kb on + strand, within CSW01_14160at 27.740 kb on - strand, within CSW01_14160at 27.790 kb on + strand, within CSW01_14160at 27.811 kb on + strand, within CSW01_14160at 27.828 kb on + strand, within CSW01_14160at 27.828 kb on + strand, within CSW01_14160at 27.830 kb on + strand, within CSW01_14160at 27.863 kb on + strandat 28.004 kb on - strandat 28.145 kb on - strandat 28.198 kb on + strand, within CSW01_14165at 28.346 kb on + strand, within CSW01_14165at 28.348 kb on + strand, within CSW01_14165at 28.354 kb on - strand, within CSW01_14165at 28.368 kb on + strand, within CSW01_14165at 28.368 kb on + strand, within CSW01_14165at 28.375 kb on + strand, within CSW01_14165at 28.375 kb on + strand, within CSW01_14165at 28.375 kb on + strand, within CSW01_14165at 28.375 kb on + strand, within CSW01_14165at 28.393 kb on + strand, within CSW01_14165at 28.423 kb on - strand, within CSW01_14165at 28.455 kb on - strand, within CSW01_14165at 28.536 kb on - strand, within CSW01_14165at 28.552 kb on + strand, within CSW01_14165at 28.575 kb on + strand, within CSW01_14165at 28.575 kb on + strand, within CSW01_14165at 28.575 kb on + strand, within CSW01_14165at 28.576 kb on - strand, within CSW01_14165at 28.583 kb on - strand, within CSW01_14165at 28.583 kb on - strand, within CSW01_14165at 28.583 kb on - strand, within CSW01_14165at 28.583 kb on - strand, within CSW01_14165at 28.583 kb on - strand, within CSW01_14165at 28.890 kb on + strand, within CSW01_14165at 28.956 kb on + strand, within CSW01_14165at 29.049 kb on + strandat 29.057 kb on - strandat 29.081 kb on - strandat 29.090 kb on - strandat 29.196 kb on + strandat 29.211 kb on + strandat 29.219 kb on - strandat 29.258 kb on + strandat 29.266 kb on - strandat 29.335 kb on + strand, within CSW01_14170at 29.359 kb on + strand, within CSW01_14170at 29.432 kb on + strand, within CSW01_14170at 29.432 kb on + strand, within CSW01_14170at 29.440 kb on - strand, within CSW01_14170at 29.440 kb on - strand, within CSW01_14170at 29.531 kb on - strand, within CSW01_14170at 29.546 kb on + strand, within CSW01_14170at 29.601 kb on - strand, within CSW01_14170at 29.691 kb on + strand, within CSW01_14170at 29.776 kb on + strand, within CSW01_14170at 29.816 kb on - strand, within CSW01_14170at 29.870 kb on + strand, within CSW01_14170at 29.906 kb on - strand, within CSW01_14170at 29.945 kb on + strand, within CSW01_14170at 30.013 kb on + strand, within CSW01_14170at 30.073 kb on + strand, within CSW01_14170

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep1
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27,380 + +0.7
27,388 - +0.8
27,448 - -1.1
27,490 + +0.3
27,490 + +1.6
27,495 + +0.8
27,495 + +0.9
27,495 + +0.3
27,596 - CSW01_14160 0.28 -0.2
27,623 + CSW01_14160 0.35 +0.4
27,623 + CSW01_14160 0.35 -1.5
27,631 - CSW01_14160 0.37 +0.4
27,631 - CSW01_14160 0.37 -0.2
27,693 + CSW01_14160 0.52 +0.2
27,693 - CSW01_14160 0.52 +0.4
27,709 + CSW01_14160 0.56 +1.4
27,740 - CSW01_14160 0.64 +0.0
27,790 + CSW01_14160 0.76 +0.9
27,811 + CSW01_14160 0.82 -2.0
27,828 + CSW01_14160 0.86 -1.3
27,828 + CSW01_14160 0.86 +0.9
27,830 + CSW01_14160 0.86 -0.7
27,863 + +0.6
28,004 - +1.0
28,145 - -0.7
28,198 + CSW01_14165 0.14 +1.2
28,346 + CSW01_14165 0.28 -2.7
28,348 + CSW01_14165 0.28 +1.3
28,354 - CSW01_14165 0.29 +0.3
28,368 + CSW01_14165 0.30 +1.5
28,368 + CSW01_14165 0.30 -2.5
28,375 + CSW01_14165 0.31 -2.6
28,375 + CSW01_14165 0.31 -1.6
28,375 + CSW01_14165 0.31 +1.5
28,375 + CSW01_14165 0.31 -2.9
28,393 + CSW01_14165 0.32 +1.9
28,423 - CSW01_14165 0.35 -1.7
28,455 - CSW01_14165 0.38 -2.5
28,536 - CSW01_14165 0.46 +0.1
28,552 + CSW01_14165 0.48 +0.5
28,575 + CSW01_14165 0.50 -1.1
28,575 + CSW01_14165 0.50 -1.8
28,575 + CSW01_14165 0.50 -2.4
28,576 - CSW01_14165 0.50 +0.7
28,583 - CSW01_14165 0.51 +1.4
28,583 - CSW01_14165 0.51 +0.4
28,583 - CSW01_14165 0.51 +0.8
28,583 - CSW01_14165 0.51 -0.2
28,583 - CSW01_14165 0.51 +1.0
28,890 + CSW01_14165 0.80 +1.0
28,956 + CSW01_14165 0.86 -2.2
29,049 + -3.1
29,057 - -0.7
29,081 - +0.0
29,090 - -3.0
29,196 + +0.9
29,211 + +0.0
29,219 - +0.0
29,258 + +0.1
29,266 - -1.3
29,335 + CSW01_14170 0.12 +0.1
29,359 + CSW01_14170 0.15 +1.5
29,432 + CSW01_14170 0.22 +0.6
29,432 + CSW01_14170 0.22 -2.5
29,440 - CSW01_14170 0.23 +0.5
29,440 - CSW01_14170 0.23 -0.5
29,531 - CSW01_14170 0.32 +1.3
29,546 + CSW01_14170 0.34 +0.2
29,601 - CSW01_14170 0.39 +0.1
29,691 + CSW01_14170 0.48 -1.6
29,776 + CSW01_14170 0.57 -2.9
29,816 - CSW01_14170 0.61 -0.6
29,870 + CSW01_14170 0.66 +0.6
29,906 - CSW01_14170 0.70 -0.5
29,945 + CSW01_14170 0.74 +0.2
30,013 + CSW01_14170 0.81 +0.3
30,073 + CSW01_14170 0.87 +2.4

Or see this region's nucleotide sequence