Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_13870

Experiment: ICP3_phage_41.1_MOI_rep1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	ICP3_phage_41.1_MOI_rep1
2,954,432	-		CSW01_13865	0.39	-3.1
2,954,439	+		CSW01_13865	0.39	-4.4
2,954,442	-		CSW01_13865	0.39	-0.6
2,954,447	-		CSW01_13865	0.40	-2.8
2,954,447	-		CSW01_13865	0.40	-0.6
2,954,447	-		CSW01_13865	0.40	+0.7
2,954,471	+		CSW01_13865	0.42	-0.4
2,954,547	-		CSW01_13865	0.47	+1.0
2,954,650	-		CSW01_13865	0.54	-2.6
2,954,832	-		CSW01_13865	0.67	+0.7
2,954,843	+		CSW01_13865	0.68	-1.7
2,954,895	-		CSW01_13865	0.72	+0.6
2,954,959	+		CSW01_13865	0.76	-2.7
2,954,988	+		CSW01_13865	0.78	+0.2
2,954,988	+		CSW01_13865	0.78	-1.6
2,955,117	+		CSW01_13865	0.88	+1.1
2,955,127	+		CSW01_13865	0.88	-1.4
2,955,130	-		CSW01_13865	0.89	+0.7
2,955,133	+		CSW01_13865	0.89	-0.9
2,955,236	+				+0.8
2,955,236	+				+1.2
2,955,236	+				-1.3
2,955,296	+				+0.8
2,955,304	-				+0.2
2,955,324	-				-0.3
2,955,334	+				-0.7
2,955,344	+				-3.5
2,955,352	-				-0.6
2,955,352	-				+0.4
2,955,471	-				-3.1
2,955,471	-				+0.5
2,955,473	+				+0.1
2,955,478	+				-4.2
2,955,478	+				-1.2
2,955,624	+		CSW01_13870	0.12	+0.0
2,955,703	-		CSW01_13870	0.15	+0.3
2,955,709	+		CSW01_13870	0.15	+0.6
2,955,719	+		CSW01_13870	0.15	+1.0
2,955,725	+		CSW01_13870	0.15	+1.5
2,955,730	+		CSW01_13870	0.16	+0.2
2,955,743	-		CSW01_13870	0.16	-2.7
2,955,743	-		CSW01_13870	0.16	+1.6
2,955,743	-		CSW01_13870	0.16	-1.5
2,955,743	-		CSW01_13870	0.16	-0.4
2,955,849	-		CSW01_13870	0.20	+1.4
2,955,854	+		CSW01_13870	0.21	-0.7
2,955,854	+		CSW01_13870	0.21	-3.9
2,955,854	+		CSW01_13870	0.21	-1.4
2,955,854	+		CSW01_13870	0.21	-2.0
2,955,862	-		CSW01_13870	0.21	-1.5
2,955,862	-		CSW01_13870	0.21	-0.1
2,955,862	-		CSW01_13870	0.21	+0.7
2,955,866	-		CSW01_13870	0.21	+2.4
2,955,896	-		CSW01_13870	0.22	-2.9
2,955,903	+		CSW01_13870	0.22	+0.3
2,955,913	+		CSW01_13870	0.23	+0.3
2,956,058	+		CSW01_13870	0.29	+0.2
2,956,101	+		CSW01_13870	0.30	-1.5
2,956,114	-		CSW01_13870	0.31	-3.8
2,956,131	+		CSW01_13870	0.31	-0.6
2,956,147	+		CSW01_13870	0.32	+0.4
2,956,147	+		CSW01_13870	0.32	-0.8
2,956,147	+		CSW01_13870	0.32	-1.9
2,956,203	-		CSW01_13870	0.34	+0.3
2,956,219	+		CSW01_13870	0.35	+1.4
2,956,219	+		CSW01_13870	0.35	-0.2
2,956,219	+		CSW01_13870	0.35	-2.0
2,956,219	+		CSW01_13870	0.35	+0.8
2,956,219	+		CSW01_13870	0.35	+0.7
2,956,219	+		CSW01_13870	0.35	+0.2
2,956,219	+		CSW01_13870	0.35	+0.0
2,956,219	+		CSW01_13870	0.35	-1.8
2,956,227	-		CSW01_13870	0.35	+0.3
2,956,227	-		CSW01_13870	0.35	+0.2
2,956,227	-		CSW01_13870	0.35	-3.3
2,956,227	-		CSW01_13870	0.35	+0.5
2,956,227	-		CSW01_13870	0.35	-3.1
2,956,227	-		CSW01_13870	0.35	-2.1
2,956,227	-		CSW01_13870	0.35	-0.5
2,956,227	-		CSW01_13870	0.35	+0.3
2,956,244	-		CSW01_13870	0.36	-3.1
2,956,272	-		CSW01_13870	0.37	-1.2
2,956,274	+		CSW01_13870	0.37	+1.3
2,956,282	-		CSW01_13870	0.37	-0.4
2,956,283	-		CSW01_13870	0.37	-3.5
2,956,309	+		CSW01_13870	0.38	+1.2
2,956,341	+		CSW01_13870	0.40	+2.3
2,956,341	+		CSW01_13870	0.40	-1.1
2,956,349	-		CSW01_13870	0.40	+0.5
2,956,387	+		CSW01_13870	0.41	+1.7
2,956,428	+		CSW01_13870	0.43	-0.4
2,956,428	+		CSW01_13870	0.43	+1.4
2,956,428	-		CSW01_13870	0.43	-3.6
2,956,436	-		CSW01_13870	0.43	-1.7
2,956,519	-		CSW01_13870	0.47	+0.5
2,956,529	-		CSW01_13870	0.47	+0.3
2,956,630	+		CSW01_13870	0.51	-0.7
2,956,650	-		CSW01_13870	0.52	-1.8
2,956,701	-		CSW01_13870	0.54	-3.3
2,956,748	+		CSW01_13870	0.56	+0.3
2,956,756	-		CSW01_13870	0.56	-3.8
2,956,756	-		CSW01_13870	0.56	-0.3
2,956,850	+		CSW01_13870	0.60	+0.8
2,956,931	-		CSW01_13870	0.63	-0.2
2,956,979	+		CSW01_13870	0.65	+0.3
2,956,999	-		CSW01_13870	0.65	-0.9
2,957,007	-		CSW01_13870	0.66	+0.6
2,957,033	-		CSW01_13870	0.67	-0.3
2,957,033	-		CSW01_13870	0.67	+2.4
2,957,200	+		CSW01_13870	0.73	-3.4
2,957,208	-		CSW01_13870	0.74	-0.6
2,957,208	-		CSW01_13870	0.74	+0.0
2,957,311	+		CSW01_13870	0.78	-1.7
2,957,321	+		CSW01_13870	0.78	-0.8
2,957,430	+		CSW01_13870	0.82	-0.9
2,957,430	+		CSW01_13870	0.82	-3.7
2,957,430	+		CSW01_13870	0.82	+0.3
2,957,430	+		CSW01_13870	0.82	-0.5
2,957,432	+		CSW01_13870	0.82	-0.6
2,957,438	-		CSW01_13870	0.83	+0.2
2,957,440	-		CSW01_13870	0.83	-2.4
2,957,475	-		CSW01_13870	0.84	+0.2
2,957,531	+		CSW01_13870	0.86	-0.4
2,957,539	-		CSW01_13870	0.87	-0.3
2,957,596	-		CSW01_13870	0.89	+0.1
2,957,597	-		CSW01_13870	0.89	+0.3
2,957,597	-		CSW01_13870	0.89	-1.0
2,957,679	+				+0.6
2,957,756	-				+0.8
2,957,766	-				-0.0
2,957,832	-				-4.5
2,957,858	+				-0.0
2,958,095	+		CSW01_13875	0.12	+0.0
2,958,103	-		CSW01_13875	0.13	+0.5
2,958,103	-		CSW01_13875	0.13	-0.1
2,958,103	-		CSW01_13875	0.13	+1.1
2,958,103	-		CSW01_13875	0.13	+1.1
2,958,175	+		CSW01_13875	0.20	-0.7
2,958,286	+		CSW01_13875	0.31	-2.8
2,958,289	+		CSW01_13875	0.32	+2.0
2,958,295	+		CSW01_13875	0.32	+0.7
2,958,426	+		CSW01_13875	0.45	-2.7
2,958,434	-		CSW01_13875	0.46	+0.7
2,958,444	-		CSW01_13875	0.47	-2.1
2,958,478	+		CSW01_13875	0.50	-0.3
2,958,528	+		CSW01_13875	0.55	+1.2
2,958,554	-		CSW01_13875	0.58	-0.3
2,958,565	+		CSW01_13875	0.59	+1.3
2,958,591	-		CSW01_13875	0.62	-2.0
2,958,632	-		CSW01_13875	0.66	+1.3
2,958,679	-		CSW01_13875	0.70	-2.8
2,958,706	-		CSW01_13875	0.73	+1.2
2,958,710	+		CSW01_13875	0.74	-3.3
2,958,726	-		CSW01_13875	0.75	-0.8
2,958,800	-		CSW01_13875	0.82	+0.6
2,958,821	+		CSW01_13875	0.85	-2.7
2,958,821	+		CSW01_13875	0.85	+1.1
2,958,821	+		CSW01_13875	0.85	+0.5
2,958,829	-		CSW01_13875	0.85	-0.6
2,958,865	+		CSW01_13875	0.89	+0.2