Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_13555

Experiment: ICP3_phage_41.1_MOI_rep1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	ICP3_phage_41.1_MOI_rep1
2,881,912	+		CSW01_13550	0.16	-1.1
2,881,912	+		CSW01_13550	0.16	+2.0
2,881,920	-		CSW01_13550	0.16	+1.4
2,881,920	-		CSW01_13550	0.16	+1.1
2,881,920	-		CSW01_13550	0.16	-0.4
2,881,963	-		CSW01_13550	0.20	-2.9
2,882,030	-		CSW01_13550	0.26	+1.0
2,882,054	+		CSW01_13550	0.28	-1.9
2,882,105	+		CSW01_13550	0.32	+0.6
2,882,121	-		CSW01_13550	0.33	-2.1
2,882,126	-		CSW01_13550	0.34	-0.7
2,882,143	+		CSW01_13550	0.35	-2.7
2,882,151	-		CSW01_13550	0.36	+0.7
2,882,152	-		CSW01_13550	0.36	+0.5
2,882,152	-		CSW01_13550	0.36	+0.7
2,882,177	-		CSW01_13550	0.38	+0.6
2,882,186	-		CSW01_13550	0.39	+1.3
2,882,226	+		CSW01_13550	0.42	+0.5
2,882,234	-		CSW01_13550	0.43	-0.8
2,882,234	-		CSW01_13550	0.43	-2.0
2,882,249	+		CSW01_13550	0.44	-0.9
2,882,257	-		CSW01_13550	0.45	+0.9
2,882,291	-		CSW01_13550	0.48	-0.2
2,882,298	-		CSW01_13550	0.49	+0.1
2,882,298	-		CSW01_13550	0.49	+1.0
2,882,307	+		CSW01_13550	0.49	-0.2
2,882,351	+		CSW01_13550	0.53	-2.9
2,882,409	+		CSW01_13550	0.58	-0.3
2,882,416	+		CSW01_13550	0.59	+1.1
2,882,424	-		CSW01_13550	0.59	+0.9
2,882,424	-		CSW01_13550	0.59	+1.5
2,882,424	-		CSW01_13550	0.59	+0.9
2,882,424	-		CSW01_13550	0.59	+0.3
2,882,434	-		CSW01_13550	0.60	-0.8
2,882,436	+		CSW01_13550	0.60	-3.1
2,882,455	-		CSW01_13550	0.62	+1.0
2,882,455	-		CSW01_13550	0.62	-3.2
2,882,496	+		CSW01_13550	0.66	+0.9
2,882,516	+		CSW01_13550	0.67	+1.5
2,882,571	-		CSW01_13550	0.72	+0.2
2,882,636	-		CSW01_13550	0.78	+1.4
2,882,653	+		CSW01_13550	0.79	+0.9
2,882,653	+		CSW01_13550	0.79	+0.8
2,882,661	-		CSW01_13550	0.80	+0.5
2,882,693	+		CSW01_13550	0.82	-1.1
2,882,710	-		CSW01_13550	0.84	+0.4
2,882,747	+		CSW01_13550	0.87	-1.9
2,882,785	-				+0.2
2,882,785	-				-0.9
2,882,786	-				+0.1
2,882,827	+				-0.7
2,882,835	-				+0.4
2,882,835	-				+0.9
2,882,835	-				-1.4
2,882,835	-				-1.6
2,882,839	+				-4.9
2,882,839	+				+1.2
2,882,899	-				+0.4
2,882,935	+				-4.0
2,883,080	+				-0.4
2,883,080	+				-0.3
2,883,083	-				+0.1
2,883,088	-				-0.2
2,883,183	-		CSW01_13555	0.11	+1.6
2,883,221	+		CSW01_13555	0.13	+1.6
2,883,270	+		CSW01_13555	0.15	+1.9
2,883,275	+		CSW01_13555	0.15	+0.4
2,883,280	+		CSW01_13555	0.15	+0.2
2,883,283	-		CSW01_13555	0.15	-0.8
2,883,283	-		CSW01_13555	0.15	-2.0
2,883,288	+		CSW01_13555	0.16	-2.0
2,883,342	-		CSW01_13555	0.18	+0.6
2,883,377	+		CSW01_13555	0.19	-3.1
2,883,377	+		CSW01_13555	0.19	-0.9
2,883,385	-		CSW01_13555	0.20	-0.1
2,883,398	+		CSW01_13555	0.20	+0.2
2,883,406	-		CSW01_13555	0.21	+1.0
2,883,406	-		CSW01_13555	0.21	-3.3
2,883,406	-		CSW01_13555	0.21	+0.9
2,883,406	-		CSW01_13555	0.21	+2.2
2,883,410	+		CSW01_13555	0.21	+1.3
2,883,410	+		CSW01_13555	0.21	-0.9
2,883,410	+		CSW01_13555	0.21	+1.0
2,883,410	+		CSW01_13555	0.21	-0.3
2,883,418	-		CSW01_13555	0.21	-1.1
2,883,431	+		CSW01_13555	0.22	-0.3
2,883,438	-		CSW01_13555	0.22	-0.6
2,883,443	-		CSW01_13555	0.22	-3.4
2,883,445	+		CSW01_13555	0.22	-1.7
2,883,450	+		CSW01_13555	0.22	-0.7
2,883,482	+		CSW01_13555	0.24	+0.8
2,883,482	+		CSW01_13555	0.24	-3.6
2,883,487	+		CSW01_13555	0.24	+0.2
2,883,487	+		CSW01_13555	0.24	+0.7
2,883,487	+		CSW01_13555	0.24	+0.3
2,883,490	-		CSW01_13555	0.24	-0.4
2,883,490	-		CSW01_13555	0.24	+1.2
2,883,490	-		CSW01_13555	0.24	+0.7
2,883,495	-		CSW01_13555	0.24	-1.2
2,883,495	-		CSW01_13555	0.24	-1.1
2,883,495	-		CSW01_13555	0.24	+1.2
2,883,528	+		CSW01_13555	0.26	-2.1
2,883,545	+		CSW01_13555	0.26	-2.4
2,883,585	+		CSW01_13555	0.28	+0.4
2,883,585	+		CSW01_13555	0.28	-0.5
2,883,590	+		CSW01_13555	0.28	+0.1
2,883,590	+		CSW01_13555	0.28	-1.3
2,883,590	+		CSW01_13555	0.28	-0.2
2,883,593	-		CSW01_13555	0.28	-3.0
2,883,593	-		CSW01_13555	0.28	+1.2
2,883,593	-		CSW01_13555	0.28	+2.6
2,883,593	-		CSW01_13555	0.28	+0.7
2,883,593	-		CSW01_13555	0.28	-0.5
2,883,593	-		CSW01_13555	0.28	-1.0
2,883,593	-		CSW01_13555	0.28	+3.0
2,883,595	+		CSW01_13555	0.28	-2.5
2,883,595	-		CSW01_13555	0.28	-3.0
2,883,598	-		CSW01_13555	0.29	+0.5
2,883,646	-		CSW01_13555	0.31	-1.7
2,883,652	+		CSW01_13555	0.31	+0.7
2,883,684	+		CSW01_13555	0.32	-0.1
2,883,684	+		CSW01_13555	0.32	-1.7
2,883,687	-		CSW01_13555	0.32	-4.0
2,883,694	+		CSW01_13555	0.33	-3.5
2,883,694	+		CSW01_13555	0.33	-2.5
2,883,694	+		CSW01_13555	0.33	-2.1
2,883,694	+		CSW01_13555	0.33	+1.6
2,883,694	+		CSW01_13555	0.33	+0.4
2,883,694	+		CSW01_13555	0.33	+2.3
2,883,694	+		CSW01_13555	0.33	-2.6
2,883,694	+		CSW01_13555	0.33	-3.7
2,883,701	+		CSW01_13555	0.33	+0.3
2,883,701	+		CSW01_13555	0.33	+1.2
2,883,702	-		CSW01_13555	0.33	+0.4
2,883,702	-		CSW01_13555	0.33	-1.4
2,883,702	-		CSW01_13555	0.33	-2.1
2,883,702	-		CSW01_13555	0.33	+1.4
2,883,702	-		CSW01_13555	0.33	-1.1
2,883,702	-		CSW01_13555	0.33	-2.4
2,883,702	-		CSW01_13555	0.33	-0.7
2,883,702	-		CSW01_13555	0.33	-1.7
2,883,702	-		CSW01_13555	0.33	+0.9
2,883,702	-		CSW01_13555	0.33	-1.4
2,883,702	-		CSW01_13555	0.33	-2.7
2,883,711	+		CSW01_13555	0.33	-3.5
2,883,719	+		CSW01_13555	0.34	-3.0
2,883,721	+		CSW01_13555	0.34	+0.2
2,883,724	+		CSW01_13555	0.34	-0.8
2,883,732	-		CSW01_13555	0.34	+2.4
2,883,824	+		CSW01_13555	0.38	-1.3
2,883,853	+		CSW01_13555	0.39	-2.3
2,883,854	-		CSW01_13555	0.39	+0.9
2,883,959	-		CSW01_13555	0.43	-3.1
2,883,959	-		CSW01_13555	0.43	-2.4
2,883,959	-		CSW01_13555	0.43	+0.7
2,883,959	-		CSW01_13555	0.43	+0.7
2,884,054	+		CSW01_13555	0.47	-0.8
2,884,054	+		CSW01_13555	0.47	+0.1
2,884,054	+		CSW01_13555	0.47	+0.8
2,884,054	+		CSW01_13555	0.47	-1.0
2,884,062	-		CSW01_13555	0.48	-0.5
2,884,062	-		CSW01_13555	0.48	+0.2
2,884,086	-		CSW01_13555	0.49	+0.7
2,884,086	-		CSW01_13555	0.49	-3.6
2,884,086	-		CSW01_13555	0.49	-0.4
2,884,114	-		CSW01_13555	0.50	+0.2
2,884,135	-		CSW01_13555	0.51	+0.2
2,884,154	-		CSW01_13555	0.52	-1.2
2,884,167	-		CSW01_13555	0.52	+0.8
2,884,217	+		CSW01_13555	0.54	-0.2
2,884,225	-		CSW01_13555	0.55	-2.9
2,884,225	-		CSW01_13555	0.55	-2.1
2,884,225	-		CSW01_13555	0.55	+0.0
2,884,248	+		CSW01_13555	0.55	+1.2
2,884,264	+		CSW01_13555	0.56	-0.7
2,884,264	+		CSW01_13555	0.56	-0.7
2,884,272	-		CSW01_13555	0.56	+0.9
2,884,274	+		CSW01_13555	0.57	-2.3
2,884,274	+		CSW01_13555	0.57	+0.1
2,884,274	+		CSW01_13555	0.57	-3.4
2,884,346	-		CSW01_13555	0.60	+0.6
2,884,411	+		CSW01_13555	0.62	-1.5
2,884,419	-		CSW01_13555	0.63	+0.4
2,884,419	-		CSW01_13555	0.63	+1.1
2,884,447	+		CSW01_13555	0.64	-0.2
2,884,447	+		CSW01_13555	0.64	-0.8
2,884,457	+		CSW01_13555	0.64	-4.2
2,884,465	-		CSW01_13555	0.64	-3.0
2,884,465	-		CSW01_13555	0.64	-1.6
2,884,465	-		CSW01_13555	0.64	+0.6
2,884,467	+		CSW01_13555	0.65	+0.6
2,884,503	+		CSW01_13555	0.66	+1.9
2,884,503	+		CSW01_13555	0.66	-0.9
2,884,530	-		CSW01_13555	0.67	+2.6
2,884,530	-		CSW01_13555	0.67	+0.1
2,884,569	-		CSW01_13555	0.69	+0.9
2,884,624	-		CSW01_13555	0.71	-0.3
2,884,682	+		CSW01_13555	0.73	-4.8
2,884,690	-		CSW01_13555	0.74	+1.4
2,884,698	+		CSW01_13555	0.74	+1.1
2,884,725	+		CSW01_13555	0.75	-3.6
2,884,725	+		CSW01_13555	0.75	-3.3
2,884,817	-		CSW01_13555	0.79	-0.7
2,884,828	+		CSW01_13555	0.80	-0.6
2,884,861	+		CSW01_13555	0.81	-1.9
2,884,862	-		CSW01_13555	0.81	+0.9
2,884,869	-		CSW01_13555	0.81	+0.1
2,884,869	-		CSW01_13555	0.81	-1.4
2,884,869	-		CSW01_13555	0.81	+0.8
2,884,897	+		CSW01_13555	0.82	-1.1
2,884,897	+		CSW01_13555	0.82	+0.5
2,884,897	+		CSW01_13555	0.82	+1.0
2,884,897	+		CSW01_13555	0.82	-3.6
2,884,897	+		CSW01_13555	0.82	-0.8
2,884,897	+		CSW01_13555	0.82	-4.0
2,884,897	+		CSW01_13555	0.82	+1.6
2,884,905	-		CSW01_13555	0.83	-2.6
2,884,905	-		CSW01_13555	0.83	+0.1
2,884,905	-		CSW01_13555	0.83	+3.6
2,884,905	-		CSW01_13555	0.83	-1.2
2,884,905	-		CSW01_13555	0.83	+0.4
2,884,905	-		CSW01_13555	0.83	+0.5
2,884,905	-		CSW01_13555	0.83	-1.5
2,884,905	-		CSW01_13555	0.83	+1.2
2,884,905	-		CSW01_13555	0.83	+1.0
2,884,905	-		CSW01_13555	0.83	-1.4
2,884,905	-		CSW01_13555	0.83	-1.1
2,884,941	+		CSW01_13555	0.84	-0.8
2,884,944	-		CSW01_13555	0.84	+1.2
2,884,944	-		CSW01_13555	0.84	+0.2
2,884,953	-		CSW01_13555	0.85	-0.4
2,884,978	+		CSW01_13555	0.86	+1.4
2,884,987	-		CSW01_13555	0.86	+0.5
2,884,992	+		CSW01_13555	0.86	+0.1
2,885,002	+		CSW01_13555	0.87	-2.5
2,885,010	-		CSW01_13555	0.87	-1.4
2,885,010	-		CSW01_13555	0.87	+1.0
2,885,010	-		CSW01_13555	0.87	-1.3
2,885,010	-		CSW01_13555	0.87	-3.4
2,885,010	-		CSW01_13555	0.87	+1.4
2,885,010	-		CSW01_13555	0.87	+0.8
2,885,010	-		CSW01_13555	0.87	-2.1
2,885,068	+		CSW01_13555	0.89	+1.3
2,885,078	+		CSW01_13555	0.90	-2.6
2,885,091	+				-1.4
2,885,099	-				-0.8
2,885,112	-				-1.3
2,885,179	-				+0.7
2,885,198	-				-1.4
2,885,225	+				-0.0
2,885,285	-				+1.1
2,885,309	-				-4.9
2,885,316	+				-1.3
2,885,316	+				+0.2
2,885,323	-				-0.6
2,885,350	-				-2.3
2,885,375	+				-0.2
2,885,388	-				-1.7
2,885,413	-				+1.2
2,885,430	+				+0.8
2,885,430	+				-3.4
2,885,430	+				-3.4
2,885,432	+				-0.1
2,885,432	+				+1.2
2,885,438	-				+0.5
2,885,440	-				+0.8
2,885,440	-				+1.6
2,885,440	-				-3.6
2,885,440	-				+0.6
2,885,518	-				-0.2
2,885,518	-				+0.1
2,885,587	-				+0.3
2,885,589	-				+1.1
2,885,591	+				-0.1
2,885,591	+				-2.9
2,885,591	+				+2.2
2,885,591	+				+1.1
2,885,591	+				+0.2
2,885,599	-				+0.6
2,885,599	-				+1.2
2,885,599	-				-2.1
2,885,609	-				+0.2
2,885,620	-				+0.5
2,885,634	-				-3.3
2,885,734	+		CSW01_13560	0.14	-0.9
2,885,734	+		CSW01_13560	0.14	-3.1
2,885,810	+		CSW01_13560	0.23	-3.4
2,885,810	+		CSW01_13560	0.23	+1.0
2,885,813	-		CSW01_13560	0.23	-0.6
2,885,874	-		CSW01_13560	0.30	+0.7
2,885,874	-		CSW01_13560	0.30	-2.8
2,885,907	-		CSW01_13560	0.34	-0.2
2,885,960	+		CSW01_13560	0.40	-1.2
2,885,963	-		CSW01_13560	0.40	+0.4
2,885,999	+		CSW01_13560	0.44	+1.7
2,886,007	-		CSW01_13560	0.45	-2.4
2,886,018	+		CSW01_13560	0.46	+0.5
2,886,018	+		CSW01_13560	0.46	+1.6
2,886,026	-		CSW01_13560	0.47	-3.8
2,886,026	-		CSW01_13560	0.47	-0.4
2,886,026	-		CSW01_13560	0.47	-0.0
2,886,072	+		CSW01_13560	0.52	-4.4
2,886,097	+		CSW01_13560	0.55	+0.2
2,886,122	-		CSW01_13560	0.58	-3.3
2,886,203	-		CSW01_13560	0.67	-2.3
2,886,277	+		CSW01_13560	0.75	+1.7
2,886,280	-		CSW01_13560	0.76	-2.4
2,886,285	-		CSW01_13560	0.76	+1.6
2,886,285	-		CSW01_13560	0.76	-4.4
2,886,295	+		CSW01_13560	0.77	-1.4
2,886,310	+		CSW01_13560	0.79	-2.4