Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_12860

Experiment: ICP3_phage_41.1_MOI_rep1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	ICP3_phage_41.1_MOI_rep1
2,750,259	+		CSW01_12850	0.87	+0.8
2,750,267	-		CSW01_12850	0.89	+0.3
2,750,267	-		CSW01_12850	0.89	-1.2
2,750,363	-				+1.2
2,750,389	+				-1.8
2,750,412	+				-1.1
2,750,419	+				+2.2
2,750,420	-				-0.6
2,750,420	-				-2.5
2,750,420	-				-1.8
2,750,422	-				+1.5
2,750,431	+				-3.2
2,750,439	-				-1.1
2,750,467	-				+0.8
2,750,504	+				+0.9
2,750,510	+		CSW01_12855	0.10	-2.6
2,750,583	+		CSW01_12855	0.20	+1.5
2,750,623	+		CSW01_12855	0.26	-0.4
2,750,674	-		CSW01_12855	0.33	-3.6
2,750,715	+		CSW01_12855	0.38	-0.6
2,750,715	+		CSW01_12855	0.38	+1.0
2,750,715	+		CSW01_12855	0.38	-0.3
2,750,723	-		CSW01_12855	0.39	-0.4
2,750,843	-		CSW01_12855	0.56	-1.5
2,750,860	+		CSW01_12855	0.58	-0.4
2,750,949	+		CSW01_12855	0.70	+3.9
2,750,949	+		CSW01_12855	0.70	-4.8
2,750,957	-		CSW01_12855	0.71	-0.9
2,750,964	-		CSW01_12855	0.72	-2.8
2,750,980	-		CSW01_12855	0.74	-0.3
2,750,998	-		CSW01_12855	0.77	-0.2
2,751,015	+		CSW01_12855	0.79	+1.1
2,751,020	+		CSW01_12855	0.80	-2.8
2,751,025	+		CSW01_12855	0.80	+0.8
2,751,033	-		CSW01_12855	0.81	-0.4
2,751,033	-		CSW01_12855	0.81	+0.3
2,751,053	+		CSW01_12855	0.84	-2.5
2,751,061	-		CSW01_12855	0.85	-0.2
2,751,061	-		CSW01_12855	0.85	+0.2
2,751,093	+		CSW01_12855	0.90	+1.5
2,751,185	+				-2.9
2,751,228	-				-1.5
2,751,231	-				-3.0
2,751,231	-				-1.4
2,751,297	+				-0.8
2,751,330	-		CSW01_12860	0.11	-0.4
2,751,394	+		CSW01_12860	0.15	+1.8
2,751,394	+		CSW01_12860	0.15	-1.8
2,751,394	+		CSW01_12860	0.15	+1.7
2,751,394	+		CSW01_12860	0.15	-0.8
2,751,394	+		CSW01_12860	0.15	-2.8
2,751,394	+		CSW01_12860	0.15	+0.1
2,751,394	+		CSW01_12860	0.15	-0.9
2,751,402	-		CSW01_12860	0.15	+0.9
2,751,402	-		CSW01_12860	0.15	-3.6
2,751,402	-		CSW01_12860	0.15	-0.0
2,751,404	+		CSW01_12860	0.15	-0.5
2,751,445	-		CSW01_12860	0.18	-1.3
2,751,472	-		CSW01_12860	0.19	+1.0
2,751,494	-		CSW01_12860	0.21	-0.2
2,751,509	-		CSW01_12860	0.22	-0.1
2,751,517	+		CSW01_12860	0.22	-2.1
2,751,517	+		CSW01_12860	0.22	-3.8
2,751,517	+		CSW01_12860	0.22	-2.4
2,751,517	+		CSW01_12860	0.22	+0.9
2,751,517	+		CSW01_12860	0.22	-2.9
2,751,517	+		CSW01_12860	0.22	-1.1
2,751,517	+		CSW01_12860	0.22	-2.1
2,751,522	+		CSW01_12860	0.23	-1.1
2,751,525	-		CSW01_12860	0.23	-2.0
2,751,525	-		CSW01_12860	0.23	+0.4
2,751,525	-		CSW01_12860	0.23	-0.7
2,751,525	-		CSW01_12860	0.23	-4.0
2,751,525	-		CSW01_12860	0.23	+1.4
2,751,525	-		CSW01_12860	0.23	-5.8
2,751,525	-		CSW01_12860	0.23	-2.5
2,751,525	-		CSW01_12860	0.23	-3.8
2,751,525	-		CSW01_12860	0.23	+1.3
2,751,531	-		CSW01_12860	0.23	+0.4
2,751,613	+		CSW01_12860	0.28	+1.6
2,751,616	-		CSW01_12860	0.28	-0.5
2,751,616	-		CSW01_12860	0.28	+0.8
2,751,616	-		CSW01_12860	0.28	-3.3
2,751,620	+		CSW01_12860	0.29	+0.0
2,751,620	+		CSW01_12860	0.29	-0.0
2,751,620	+		CSW01_12860	0.29	+1.0
2,751,620	+		CSW01_12860	0.29	+0.7
2,751,628	-		CSW01_12860	0.29	+0.7
2,751,628	-		CSW01_12860	0.29	-2.1
2,751,678	+		CSW01_12860	0.32	-0.4
2,751,686	-		CSW01_12860	0.33	-0.6
2,751,686	-		CSW01_12860	0.33	+1.7
2,751,696	-		CSW01_12860	0.34	+0.5
2,751,735	+		CSW01_12860	0.36	-0.3
2,751,735	+		CSW01_12860	0.36	+0.7
2,751,735	+		CSW01_12860	0.36	+1.3
2,751,735	+		CSW01_12860	0.36	-2.5
2,751,743	-		CSW01_12860	0.36	-0.1
2,751,743	-		CSW01_12860	0.36	-0.1
2,751,743	-		CSW01_12860	0.36	-0.0
2,751,743	-		CSW01_12860	0.36	-0.3
2,751,743	-		CSW01_12860	0.36	-2.4
2,751,767	-		CSW01_12860	0.38	+0.9
2,751,807	+		CSW01_12860	0.40	-2.4
2,751,807	+		CSW01_12860	0.40	-0.3
2,751,815	-		CSW01_12860	0.41	-2.0
2,751,815	-		CSW01_12860	0.41	-1.6
2,751,815	-		CSW01_12860	0.41	+1.1
2,751,815	-		CSW01_12860	0.41	-2.8
2,751,824	+		CSW01_12860	0.42	+0.7
2,751,829	+		CSW01_12860	0.42	-0.8
2,751,832	-		CSW01_12860	0.42	-2.6
2,751,884	-		CSW01_12860	0.45	-0.3
2,751,937	-		CSW01_12860	0.49	+0.1
2,751,954	+		CSW01_12860	0.50	-0.1
2,751,964	+		CSW01_12860	0.50	+0.5
2,751,966	+		CSW01_12860	0.50	-0.8
2,751,974	-		CSW01_12860	0.51	+0.9
2,751,974	-		CSW01_12860	0.51	+1.4
2,751,974	-		CSW01_12860	0.51	-1.8
2,751,974	-		CSW01_12860	0.51	-2.0
2,752,010	+		CSW01_12860	0.53	+0.9
2,752,018	-		CSW01_12860	0.54	+1.0
2,752,097	+		CSW01_12860	0.59	+0.6
2,752,097	+		CSW01_12860	0.59	-2.7
2,752,100	+		CSW01_12860	0.59	+0.6
2,752,178	-		CSW01_12860	0.64	-0.6
2,752,222	+		CSW01_12860	0.67	+2.0
2,752,224	+		CSW01_12860	0.67	-0.9
2,752,269	+		CSW01_12860	0.69	-0.2
2,752,289	+		CSW01_12860	0.71	-2.5
2,752,297	-		CSW01_12860	0.71	-0.7
2,752,327	+		CSW01_12860	0.73	+0.8
2,752,332	+		CSW01_12860	0.73	-3.1
2,752,337	+		CSW01_12860	0.74	-0.9
2,752,337	+		CSW01_12860	0.74	-0.5
2,752,337	+		CSW01_12860	0.74	+0.4
2,752,337	+		CSW01_12860	0.74	-1.5
2,752,337	+		CSW01_12860	0.74	+0.6
2,752,337	+		CSW01_12860	0.74	-1.9
2,752,337	+		CSW01_12860	0.74	-2.1
2,752,337	+		CSW01_12860	0.74	-1.7
2,752,337	+		CSW01_12860	0.74	-1.1
2,752,337	+		CSW01_12860	0.74	-3.2
2,752,345	-		CSW01_12860	0.74	-0.4
2,752,345	-		CSW01_12860	0.74	-0.1
2,752,345	-		CSW01_12860	0.74	+2.0
2,752,345	-		CSW01_12860	0.74	-3.0
2,752,345	-		CSW01_12860	0.74	-0.8
2,752,345	-		CSW01_12860	0.74	+0.5
2,752,345	-		CSW01_12860	0.74	-1.8
2,752,396	+		CSW01_12860	0.77	-0.4
2,752,399	-		CSW01_12860	0.78	+1.7
2,752,404	-		CSW01_12860	0.78	-0.3
2,752,538	+		CSW01_12860	0.86	-0.0
2,752,538	+		CSW01_12860	0.86	-1.5
2,752,562	+		CSW01_12860	0.88	+0.4
2,752,562	+		CSW01_12860	0.88	+0.2
2,752,562	+		CSW01_12860	0.88	-0.0
2,752,562	+		CSW01_12860	0.88	+1.8
2,752,562	+		CSW01_12860	0.88	-0.5
2,752,562	+		CSW01_12860	0.88	-1.7
2,752,570	-		CSW01_12860	0.88	+0.9
2,752,570	-		CSW01_12860	0.88	-1.3
2,752,570	-		CSW01_12860	0.88	-3.6
2,752,570	-		CSW01_12860	0.88	-0.3
2,752,572	+		CSW01_12860	0.89	-1.3
2,752,580	-		CSW01_12860	0.89	-3.6
2,752,592	-		CSW01_12860	0.90	-3.6
2,752,595	+				+0.0
2,752,612	+				-0.8
2,752,618	-				-2.3
2,752,669	+				+0.7
2,752,674	+				+0.6
2,752,677	-				-0.8
2,752,731	+				-1.4
2,752,770	+				+1.0
2,752,864	+		CSW01_12865	0.10	-4.0
2,753,052	+		CSW01_12865	0.29	+1.2
2,753,101	+		CSW01_12865	0.34	-3.1
2,753,101	+		CSW01_12865	0.34	-3.0
2,753,101	+		CSW01_12865	0.34	-0.4
2,753,109	-		CSW01_12865	0.35	-0.1
2,753,109	-		CSW01_12865	0.35	+2.6
2,753,109	-		CSW01_12865	0.35	+0.6
2,753,109	-		CSW01_12865	0.35	-0.2
2,753,109	-		CSW01_12865	0.35	-3.0
2,753,109	-		CSW01_12865	0.35	-1.8
2,753,109	-		CSW01_12865	0.35	-0.1
2,753,109	-		CSW01_12865	0.35	+0.1
2,753,109	-		CSW01_12865	0.35	+0.5
2,753,150	+		CSW01_12865	0.39	-2.2
2,753,169	-		CSW01_12865	0.41	-2.6
2,753,243	+		CSW01_12865	0.48	-2.6
2,753,243	+		CSW01_12865	0.48	-0.1
2,753,243	+		CSW01_12865	0.48	-0.1
2,753,245	+		CSW01_12865	0.48	+0.5
2,753,253	-		CSW01_12865	0.49	+2.3
2,753,261	+		CSW01_12865	0.50	+0.0
2,753,261	+		CSW01_12865	0.50	-1.1
2,753,261	+		CSW01_12865	0.50	-1.4
2,753,269	-		CSW01_12865	0.51	-2.6
2,753,276	+		CSW01_12865	0.52	+1.3
2,753,276	+		CSW01_12865	0.52	-2.9
2,753,276	+		CSW01_12865	0.52	-2.9
2,753,284	-		CSW01_12865	0.52	+0.4
2,753,284	-		CSW01_12865	0.52	-2.5
2,753,416	-		CSW01_12865	0.66	-1.6
2,753,439	+		CSW01_12865	0.68	-0.3
2,753,480	-		CSW01_12865	0.72	-2.0
2,753,529	-		CSW01_12865	0.77	+0.3