Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_11370

Experiment: ICP3_phage_41.1_MOI_rep1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	ICP3_phage_41.1_MOI_rep1
2,414,616	-				+1.3
2,414,616	-				-2.0
2,414,616	-				-0.3
2,414,666	+				-1.8
2,414,666	+				-0.2
2,414,669	-				-1.6
2,414,674	-				+0.5
2,414,883	+		CSW01_11365	0.37	+0.0
2,414,897	+		CSW01_11365	0.40	-1.7
2,414,902	+		CSW01_11365	0.40	-2.4
2,415,312	-				+1.2
2,415,410	+				-1.2
2,415,410	+				-2.4
2,415,580	+				+3.0
2,415,654	+				+0.6
2,415,665	+				-2.8
2,415,738	-				+1.5
2,415,789	+				+0.7
2,415,870	+		CSW01_11370	0.13	-1.5
2,415,870	+		CSW01_11370	0.13	+0.5
2,415,870	+		CSW01_11370	0.13	+0.8
2,415,878	-		CSW01_11370	0.13	+0.9
2,415,878	-		CSW01_11370	0.13	-0.8
2,415,878	-		CSW01_11370	0.13	-2.4
2,415,878	-		CSW01_11370	0.13	-0.6
2,415,878	-		CSW01_11370	0.13	+0.3
2,415,878	-		CSW01_11370	0.13	+0.8
2,415,884	-		CSW01_11370	0.13	-3.0
2,415,898	-		CSW01_11370	0.14	-2.4
2,415,922	-		CSW01_11370	0.15	+0.5
2,415,934	+		CSW01_11370	0.15	-1.4
2,415,969	-		CSW01_11370	0.17	+0.6
2,415,971	+		CSW01_11370	0.17	-0.8
2,415,986	-		CSW01_11370	0.17	-2.9
2,416,027	+		CSW01_11370	0.19	+0.5
2,416,034	-		CSW01_11370	0.19	+0.3
2,416,115	+		CSW01_11370	0.23	+0.7
2,416,155	+		CSW01_11370	0.24	-1.6
2,416,158	-		CSW01_11370	0.24	+0.4
2,416,173	+		CSW01_11370	0.25	+1.0
2,416,181	+		CSW01_11370	0.25	+0.5
2,416,190	+		CSW01_11370	0.26	-2.5
2,416,287	-		CSW01_11370	0.30	-0.6
2,416,297	-		CSW01_11370	0.30	+0.3
2,416,297	-		CSW01_11370	0.30	+2.1
2,416,312	+		CSW01_11370	0.31	-0.2
2,416,320	-		CSW01_11370	0.31	+0.8
2,416,353	-		CSW01_11370	0.32	+0.5
2,416,353	-		CSW01_11370	0.32	+0.8
2,416,416	+		CSW01_11370	0.35	+0.4
2,416,426	+		CSW01_11370	0.35	+1.2
2,416,426	+		CSW01_11370	0.35	-1.7
2,416,426	+		CSW01_11370	0.35	+0.1
2,416,434	-		CSW01_11370	0.36	-0.1
2,416,434	-		CSW01_11370	0.36	-1.4
2,416,434	-		CSW01_11370	0.36	+1.3
2,416,434	-		CSW01_11370	0.36	-0.9
2,416,434	-		CSW01_11370	0.36	+0.2
2,416,439	+		CSW01_11370	0.36	-3.5
2,416,439	+		CSW01_11370	0.36	+0.6
2,416,439	+		CSW01_11370	0.36	+1.9
2,416,439	+		CSW01_11370	0.36	-1.1
2,416,439	+		CSW01_11370	0.36	-1.6
2,416,439	+		CSW01_11370	0.36	-1.3
2,416,439	+		CSW01_11370	0.36	-1.0
2,416,439	+		CSW01_11370	0.36	+1.0
2,416,439	+		CSW01_11370	0.36	-0.3
2,416,439	+		CSW01_11370	0.36	-0.4
2,416,439	+		CSW01_11370	0.36	-1.8
2,416,439	+		CSW01_11370	0.36	-0.5
2,416,439	+		CSW01_11370	0.36	+1.5
2,416,439	+		CSW01_11370	0.36	-0.5
2,416,439	+		CSW01_11370	0.36	+1.1
2,416,439	+		CSW01_11370	0.36	-0.5
2,416,439	+		CSW01_11370	0.36	+0.4
2,416,447	-		CSW01_11370	0.36	+0.4
2,416,447	-		CSW01_11370	0.36	+0.4
2,416,447	-		CSW01_11370	0.36	-2.8
2,416,447	-		CSW01_11370	0.36	+0.1
2,416,447	-		CSW01_11370	0.36	-0.8
2,416,447	-		CSW01_11370	0.36	-2.3
2,416,447	-		CSW01_11370	0.36	-2.1
2,416,447	-		CSW01_11370	0.36	-3.9
2,416,447	-		CSW01_11370	0.36	-3.4
2,416,447	-		CSW01_11370	0.36	-0.7
2,416,447	-		CSW01_11370	0.36	-3.8
2,416,447	-		CSW01_11370	0.36	-2.8
2,416,447	-		CSW01_11370	0.36	-0.4
2,416,447	-		CSW01_11370	0.36	-0.7
2,416,447	-		CSW01_11370	0.36	+1.2
2,416,447	-		CSW01_11370	0.36	+0.3
2,416,447	-		CSW01_11370	0.36	+1.0
2,416,454	+		CSW01_11370	0.36	-1.6
2,416,462	-		CSW01_11370	0.37	-1.1
2,416,483	-		CSW01_11370	0.38	+0.5
2,416,518	+		CSW01_11370	0.39	+0.9
2,416,526	-		CSW01_11370	0.39	-2.8
2,416,560	-		CSW01_11370	0.41	-2.8
2,416,576	+		CSW01_11370	0.41	+1.8
2,416,577	+		CSW01_11370	0.42	+1.5
2,416,584	-		CSW01_11370	0.42	+1.0
2,416,594	+		CSW01_11370	0.42	-0.9
2,416,643	+		CSW01_11370	0.44	+0.4
2,416,688	+		CSW01_11370	0.46	+0.7
2,416,688	+		CSW01_11370	0.46	-0.7
2,416,688	+		CSW01_11370	0.46	-2.7
2,416,688	+		CSW01_11370	0.46	+0.5
2,416,688	+		CSW01_11370	0.46	-2.2
2,416,688	+		CSW01_11370	0.46	-3.1
2,416,688	+		CSW01_11370	0.46	-3.8
2,416,696	-		CSW01_11370	0.46	-4.1
2,416,696	-		CSW01_11370	0.46	-1.3
2,416,696	-		CSW01_11370	0.46	-0.6
2,416,737	+		CSW01_11370	0.48	+0.9
2,416,742	-		CSW01_11370	0.48	-0.2
2,416,745	-		CSW01_11370	0.48	+0.5
2,416,841	-		CSW01_11370	0.52	+0.2
2,416,925	+		CSW01_11370	0.56	-1.5
2,416,991	+		CSW01_11370	0.58	-2.5
2,416,999	-		CSW01_11370	0.59	+0.2
2,416,999	-		CSW01_11370	0.59	-1.0
2,416,999	-		CSW01_11370	0.59	-0.9
2,417,212	-		CSW01_11370	0.67	-0.2
2,417,214	+		CSW01_11370	0.68	-0.3
2,417,231	+		CSW01_11370	0.68	-0.9
2,417,231	+		CSW01_11370	0.68	+0.7
2,417,239	-		CSW01_11370	0.69	+1.1
2,417,239	-		CSW01_11370	0.69	+0.9
2,417,239	-		CSW01_11370	0.69	-2.6
2,417,239	-		CSW01_11370	0.69	+0.3
2,417,250	-		CSW01_11370	0.69	+1.8
2,417,284	-		CSW01_11370	0.70	-2.2
2,417,321	+		CSW01_11370	0.72	-1.5
2,417,321	+		CSW01_11370	0.72	-0.7
2,417,329	-		CSW01_11370	0.72	+0.7
2,417,329	-		CSW01_11370	0.72	-3.4
2,417,329	-		CSW01_11370	0.72	+0.4
2,417,329	-		CSW01_11370	0.72	+1.7
2,417,359	+		CSW01_11370	0.73	-2.5
2,417,359	+		CSW01_11370	0.73	+0.0
2,417,378	+		CSW01_11370	0.74	+0.4
2,417,378	+		CSW01_11370	0.74	-1.1
2,417,378	+		CSW01_11370	0.74	-0.4
2,417,386	-		CSW01_11370	0.75	-0.3
2,417,386	-		CSW01_11370	0.75	-2.2
2,417,504	-		CSW01_11370	0.79	+1.7
2,417,510	-		CSW01_11370	0.80	+0.9
2,417,537	+		CSW01_11370	0.81	-0.8
2,417,547	+		CSW01_11370	0.81	-0.1
2,417,555	-		CSW01_11370	0.82	+0.3
2,417,615	-		CSW01_11370	0.84	+0.8
2,417,640	+		CSW01_11370	0.85	-2.4
2,417,711	+		CSW01_11370	0.88	+1.5
2,417,711	+		CSW01_11370	0.88	+1.0
2,417,719	-		CSW01_11370	0.88	+0.6
2,417,812	+				-3.8
2,417,812	+				-0.3
2,417,820	-				+1.4
2,417,906	-				+0.5
2,417,930	-				+1.1
2,417,985	+				+1.2
2,417,985	+				+0.6
2,417,993	-				-0.9
2,417,993	-				+0.5
2,417,993	-				-1.5
2,417,993	-				-2.2
2,418,000	-				-1.5
2,418,007	+				+0.5
2,418,007	+				+1.5
2,418,022	+				+1.1
2,418,022	+				-0.3
2,418,022	+				+1.5
2,418,032	-				+0.2
2,418,130	-				-0.2
2,418,170	-				-1.0
2,418,227	+				+0.9
2,418,227	+				-2.1
2,418,227	+				-2.6
2,418,235	-				+0.5
2,418,252	+				-0.6
2,418,260	-				+1.0
2,418,308	-		CSW01_11375	0.12	+0.3
2,418,394	+		CSW01_11375	0.19	-0.9
2,418,394	+		CSW01_11375	0.19	+0.5
2,418,402	-		CSW01_11375	0.20	+0.8
2,418,415	+		CSW01_11375	0.21	+1.6
2,418,415	+		CSW01_11375	0.21	+2.3
2,418,487	+		CSW01_11375	0.27	-0.9
2,418,525	+		CSW01_11375	0.30	+0.6
2,418,564	-		CSW01_11375	0.33	-1.1
2,418,589	+		CSW01_11375	0.35	-1.0
2,418,589	-		CSW01_11375	0.35	-0.8
2,418,614	+		CSW01_11375	0.37	-3.0
2,418,646	+		CSW01_11375	0.39	+0.4
2,418,646	+		CSW01_11375	0.39	-0.8
2,418,654	-		CSW01_11375	0.40	-3.2
2,418,654	-		CSW01_11375	0.40	+0.7
2,418,654	-		CSW01_11375	0.40	+0.8
2,418,654	-		CSW01_11375	0.40	+1.0
2,418,675	+		CSW01_11375	0.41	+0.6
2,418,715	+		CSW01_11375	0.45	+0.7
2,418,728	+		CSW01_11375	0.46	+0.4
2,418,771	+		CSW01_11375	0.49	-1.6
2,418,791	-		CSW01_11375	0.51	+0.5
2,418,791	-		CSW01_11375	0.51	+0.4
2,418,882	-		CSW01_11375	0.58	-3.5
2,418,892	-		CSW01_11375	0.59	-3.8
2,418,892	-		CSW01_11375	0.59	+1.9
2,418,999	-		CSW01_11375	0.67	-0.1