Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_07770

Experiment: ICP3_phage_41.1_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_07760 and CSW01_07765 overlap by 1 nucleotidesCSW01_07765 and CSW01_07770 overlap by 4 nucleotidesCSW01_07770 and CSW01_07775 are separated by 6 nucleotides CSW01_07760: CSW01_07760 - energy transducer TonB, at 1,655,990 to 1,656,610 _07760 CSW01_07765: CSW01_07765 - biopolymer transporter exbD2, at 1,656,610 to 1,657,014 _07765 CSW01_07770: CSW01_07770 - MotA/TolQ/ExbB proton channel family protein, at 1,657,011 to 1,657,553 _07770 CSW01_07775: CSW01_07775 - flagellar motor protein MotA, at 1,657,560 to 1,658,933 _07775 Position (kb) 1657 1658Strain fitness (log2 ratio) -3 -2 -1 0 1at 1656.034 kb on + strandat 1656.057 kb on + strand, within CSW01_07760at 1656.065 kb on - strand, within CSW01_07760at 1656.203 kb on + strand, within CSW01_07760at 1656.232 kb on + strand, within CSW01_07760at 1656.232 kb on + strand, within CSW01_07760at 1656.237 kb on + strand, within CSW01_07760at 1656.240 kb on - strand, within CSW01_07760at 1656.245 kb on - strand, within CSW01_07760at 1656.245 kb on - strand, within CSW01_07760at 1656.245 kb on - strand, within CSW01_07760at 1656.248 kb on - strand, within CSW01_07760at 1656.318 kb on + strand, within CSW01_07760at 1656.481 kb on + strand, within CSW01_07760at 1656.489 kb on - strand, within CSW01_07760at 1656.557 kb on - strandat 1656.707 kb on + strand, within CSW01_07765at 1656.978 kb on - strandat 1657.130 kb on - strand, within CSW01_07770at 1657.171 kb on + strand, within CSW01_07770at 1657.176 kb on + strand, within CSW01_07770at 1657.176 kb on + strand, within CSW01_07770at 1657.184 kb on - strand, within CSW01_07770at 1657.238 kb on + strand, within CSW01_07770at 1657.344 kb on + strand, within CSW01_07770at 1657.352 kb on - strand, within CSW01_07770at 1657.391 kb on + strand, within CSW01_07770at 1657.409 kb on - strand, within CSW01_07770at 1657.470 kb on + strand, within CSW01_07770at 1657.485 kb on + strand, within CSW01_07770at 1657.557 kb on + strandat 1657.565 kb on - strandat 1657.565 kb on - strandat 1657.565 kb on - strandat 1657.565 kb on - strandat 1657.586 kb on + strandat 1657.610 kb on - strandat 1657.708 kb on - strand, within CSW01_07775at 1657.834 kb on + strand, within CSW01_07775at 1657.949 kb on + strand, within CSW01_07775at 1657.949 kb on + strand, within CSW01_07775at 1658.162 kb on + strand, within CSW01_07775at 1658.162 kb on + strand, within CSW01_07775at 1658.162 kb on + strand, within CSW01_07775at 1658.162 kb on + strand, within CSW01_07775at 1658.162 kb on + strand, within CSW01_07775at 1658.282 kb on + strand, within CSW01_07775at 1658.421 kb on + strand, within CSW01_07775at 1658.454 kb on + strand, within CSW01_07775at 1658.463 kb on - strand, within CSW01_07775at 1658.465 kb on + strand, within CSW01_07775at 1658.465 kb on + strand, within CSW01_07775at 1658.524 kb on + strand, within CSW01_07775at 1658.532 kb on - strand, within CSW01_07775

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep1
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1,656,034 + -1.4
1,656,057 + CSW01_07760 0.11 +0.4
1,656,065 - CSW01_07760 0.12 +0.7
1,656,203 + CSW01_07760 0.34 +0.1
1,656,232 + CSW01_07760 0.39 +0.4
1,656,232 + CSW01_07760 0.39 +1.0
1,656,237 + CSW01_07760 0.40 -0.3
1,656,240 - CSW01_07760 0.40 +0.7
1,656,245 - CSW01_07760 0.41 -0.3
1,656,245 - CSW01_07760 0.41 -2.8
1,656,245 - CSW01_07760 0.41 +0.3
1,656,248 - CSW01_07760 0.42 +0.9
1,656,318 + CSW01_07760 0.53 -0.4
1,656,481 + CSW01_07760 0.79 +0.6
1,656,489 - CSW01_07760 0.80 +0.9
1,656,557 - -0.0
1,656,707 + CSW01_07765 0.24 -0.4
1,656,978 - -1.8
1,657,130 - CSW01_07770 0.22 -2.3
1,657,171 + CSW01_07770 0.29 -2.9
1,657,176 + CSW01_07770 0.30 -1.7
1,657,176 + CSW01_07770 0.30 -1.0
1,657,184 - CSW01_07770 0.32 -2.6
1,657,238 + CSW01_07770 0.42 -2.0
1,657,344 + CSW01_07770 0.61 +0.4
1,657,352 - CSW01_07770 0.63 -2.4
1,657,391 + CSW01_07770 0.70 +0.7
1,657,409 - CSW01_07770 0.73 -3.2
1,657,470 + CSW01_07770 0.85 +0.1
1,657,485 + CSW01_07770 0.87 -2.0
1,657,557 + +0.6
1,657,565 - +0.7
1,657,565 - +0.5
1,657,565 - +0.8
1,657,565 - +1.1
1,657,586 + -1.4
1,657,610 - +1.0
1,657,708 - CSW01_07775 0.11 +0.5
1,657,834 + CSW01_07775 0.20 -0.9
1,657,949 + CSW01_07775 0.28 +0.1
1,657,949 + CSW01_07775 0.28 -0.1
1,658,162 + CSW01_07775 0.44 -0.1
1,658,162 + CSW01_07775 0.44 -0.9
1,658,162 + CSW01_07775 0.44 -0.7
1,658,162 + CSW01_07775 0.44 -0.2
1,658,162 + CSW01_07775 0.44 -3.2
1,658,282 + CSW01_07775 0.53 -0.1
1,658,421 + CSW01_07775 0.63 -1.8
1,658,454 + CSW01_07775 0.65 -0.9
1,658,463 - CSW01_07775 0.66 -0.2
1,658,465 + CSW01_07775 0.66 -1.7
1,658,465 + CSW01_07775 0.66 -1.8
1,658,524 + CSW01_07775 0.70 -0.3
1,658,532 - CSW01_07775 0.71 -2.0

Or see this region's nucleotide sequence