Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_07625

Experiment: ICP3_phage_41.1_MOI_rep1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_07615 and CSW01_07620 overlap by 74 nucleotidesCSW01_07620 and CSW01_07625 are separated by 224 nucleotidesCSW01_07625 and CSW01_07630 are separated by 106 nucleotides CSW01_07615: CSW01_07615 - DUF3306 domain-containing protein, at 1,629,409 to 1,630,074 _07615 CSW01_07620: CSW01_07620 - DUF3305 domain-containing protein, at 1,630,001 to 1,630,477 _07620 CSW01_07625: CSW01_07625 - sulfurtransferase FdhD, at 1,630,702 to 1,631,535 _07625 CSW01_07630: CSW01_07630 - ABC-F family ATPase, at 1,631,642 to 1,633,234 _07630 Position (kb) 1630 1631 1632Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1629.710 kb on - strand, within CSW01_07615at 1629.715 kb on - strand, within CSW01_07615at 1629.829 kb on + strand, within CSW01_07615at 1629.909 kb on - strand, within CSW01_07615at 1630.193 kb on - strand, within CSW01_07620at 1630.231 kb on + strand, within CSW01_07620at 1630.240 kb on + strand, within CSW01_07620at 1630.260 kb on - strand, within CSW01_07620at 1630.284 kb on - strand, within CSW01_07620at 1630.324 kb on + strand, within CSW01_07620at 1630.473 kb on + strandat 1630.546 kb on + strandat 1630.693 kb on - strandat 1630.812 kb on + strand, within CSW01_07625at 1630.822 kb on + strand, within CSW01_07625at 1630.830 kb on - strand, within CSW01_07625at 1630.885 kb on + strand, within CSW01_07625at 1630.893 kb on - strand, within CSW01_07625at 1631.087 kb on - strand, within CSW01_07625at 1631.124 kb on + strand, within CSW01_07625at 1631.124 kb on + strand, within CSW01_07625at 1631.132 kb on - strand, within CSW01_07625at 1631.132 kb on - strand, within CSW01_07625at 1631.132 kb on - strand, within CSW01_07625at 1631.132 kb on - strand, within CSW01_07625at 1631.185 kb on + strand, within CSW01_07625at 1631.185 kb on + strand, within CSW01_07625at 1631.185 kb on + strand, within CSW01_07625at 1631.193 kb on - strand, within CSW01_07625at 1631.193 kb on - strand, within CSW01_07625at 1631.193 kb on - strand, within CSW01_07625at 1631.193 kb on - strand, within CSW01_07625at 1631.247 kb on + strand, within CSW01_07625at 1631.255 kb on - strand, within CSW01_07625at 1631.273 kb on + strand, within CSW01_07625at 1631.372 kb on + strand, within CSW01_07625at 1631.411 kb on + strand, within CSW01_07625at 1631.476 kb on - strandat 1631.541 kb on + strandat 1631.557 kb on - strandat 1631.731 kb on + strandat 1631.791 kb on + strandat 1631.878 kb on + strand, within CSW01_07630at 1631.896 kb on + strand, within CSW01_07630at 1631.896 kb on + strand, within CSW01_07630at 1631.913 kb on + strand, within CSW01_07630at 1632.014 kb on + strand, within CSW01_07630at 1632.014 kb on + strand, within CSW01_07630at 1632.014 kb on + strand, within CSW01_07630at 1632.022 kb on - strand, within CSW01_07630at 1632.022 kb on - strand, within CSW01_07630at 1632.022 kb on - strand, within CSW01_07630at 1632.037 kb on + strand, within CSW01_07630at 1632.046 kb on - strand, within CSW01_07630at 1632.046 kb on - strand, within CSW01_07630at 1632.056 kb on + strand, within CSW01_07630at 1632.076 kb on - strand, within CSW01_07630at 1632.107 kb on + strand, within CSW01_07630at 1632.198 kb on - strand, within CSW01_07630at 1632.227 kb on - strand, within CSW01_07630at 1632.241 kb on - strand, within CSW01_07630at 1632.502 kb on - strand, within CSW01_07630

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep1
remove
1,629,710 - CSW01_07615 0.45 -1.2
1,629,715 - CSW01_07615 0.46 +0.3
1,629,829 + CSW01_07615 0.63 +1.3
1,629,909 - CSW01_07615 0.75 -1.4
1,630,193 - CSW01_07620 0.40 -0.6
1,630,231 + CSW01_07620 0.48 +2.9
1,630,240 + CSW01_07620 0.50 +0.2
1,630,260 - CSW01_07620 0.54 +0.3
1,630,284 - CSW01_07620 0.59 -1.4
1,630,324 + CSW01_07620 0.68 -0.3
1,630,473 + -1.0
1,630,546 + +0.6
1,630,693 - -1.1
1,630,812 + CSW01_07625 0.13 -1.7
1,630,822 + CSW01_07625 0.14 +0.2
1,630,830 - CSW01_07625 0.15 -0.9
1,630,885 + CSW01_07625 0.22 -1.1
1,630,893 - CSW01_07625 0.23 +0.2
1,631,087 - CSW01_07625 0.46 -0.8
1,631,124 + CSW01_07625 0.51 +1.6
1,631,124 + CSW01_07625 0.51 -1.9
1,631,132 - CSW01_07625 0.52 +0.2
1,631,132 - CSW01_07625 0.52 -2.2
1,631,132 - CSW01_07625 0.52 -2.4
1,631,132 - CSW01_07625 0.52 -1.4
1,631,185 + CSW01_07625 0.58 +0.9
1,631,185 + CSW01_07625 0.58 -0.3
1,631,185 + CSW01_07625 0.58 -3.6
1,631,193 - CSW01_07625 0.59 -0.7
1,631,193 - CSW01_07625 0.59 +1.2
1,631,193 - CSW01_07625 0.59 +0.1
1,631,193 - CSW01_07625 0.59 -0.8
1,631,247 + CSW01_07625 0.65 -0.1
1,631,255 - CSW01_07625 0.66 +0.5
1,631,273 + CSW01_07625 0.68 -1.4
1,631,372 + CSW01_07625 0.80 +0.7
1,631,411 + CSW01_07625 0.85 -1.9
1,631,476 - -0.6
1,631,541 + -1.9
1,631,557 - -2.4
1,631,731 + -2.2
1,631,791 + +1.3
1,631,878 + CSW01_07630 0.15 -0.2
1,631,896 + CSW01_07630 0.16 -0.2
1,631,896 + CSW01_07630 0.16 +0.6
1,631,913 + CSW01_07630 0.17 -0.6
1,632,014 + CSW01_07630 0.23 +0.3
1,632,014 + CSW01_07630 0.23 +0.4
1,632,014 + CSW01_07630 0.23 +0.6
1,632,022 - CSW01_07630 0.24 -0.1
1,632,022 - CSW01_07630 0.24 +1.0
1,632,022 - CSW01_07630 0.24 +0.4
1,632,037 + CSW01_07630 0.25 -0.7
1,632,046 - CSW01_07630 0.25 +0.6
1,632,046 - CSW01_07630 0.25 -1.0
1,632,056 + CSW01_07630 0.26 -0.0
1,632,076 - CSW01_07630 0.27 -1.3
1,632,107 + CSW01_07630 0.29 +0.0
1,632,198 - CSW01_07630 0.35 +0.3
1,632,227 - CSW01_07630 0.37 +0.3
1,632,241 - CSW01_07630 0.38 -0.1
1,632,502 - CSW01_07630 0.54 +0.3

Or see this region's nucleotide sequence