Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_06615

Experiment: ICP3_phage_41.1_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_06605 and CSW01_06610 overlap by 1 nucleotidesCSW01_06610 and CSW01_06615 are separated by 94 nucleotidesCSW01_06615 and CSW01_06620 are separated by 67 nucleotides CSW01_06605: CSW01_06605 - transcriptional regulator TyrR, at 1,388,723 to 1,390,264 _06605 CSW01_06610: CSW01_06610 - 30S ribosomal protein S5 alanine N-acetyltransferase, at 1,390,264 to 1,390,839 _06610 CSW01_06615: CSW01_06615 - DUF2947 domain-containing protein, at 1,390,934 to 1,391,407 _06615 CSW01_06620: CSW01_06620 - EamA family transporter, at 1,391,475 to 1,392,353 _06620 Position (kb) 1390 1391 1392Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1389.972 kb on - strand, within CSW01_06605at 1390.044 kb on + strand, within CSW01_06605at 1390.044 kb on + strand, within CSW01_06605at 1390.044 kb on + strand, within CSW01_06605at 1390.044 kb on + strand, within CSW01_06605at 1390.044 kb on + strand, within CSW01_06605at 1390.052 kb on - strand, within CSW01_06605at 1390.052 kb on - strand, within CSW01_06605at 1390.052 kb on - strand, within CSW01_06605at 1390.067 kb on + strand, within CSW01_06605at 1390.148 kb on + strandat 1390.263 kb on + strandat 1390.270 kb on + strandat 1390.323 kb on - strand, within CSW01_06610at 1390.323 kb on - strand, within CSW01_06610at 1390.355 kb on - strand, within CSW01_06610at 1390.608 kb on + strand, within CSW01_06610at 1390.715 kb on + strand, within CSW01_06610at 1390.723 kb on - strand, within CSW01_06610at 1390.860 kb on + strandat 1391.020 kb on + strand, within CSW01_06615at 1391.020 kb on + strand, within CSW01_06615at 1391.170 kb on - strand, within CSW01_06615at 1391.225 kb on - strand, within CSW01_06615at 1391.516 kb on + strandat 1391.516 kb on + strandat 1391.516 kb on + strandat 1391.516 kb on + strandat 1391.516 kb on + strandat 1391.524 kb on - strandat 1391.524 kb on - strandat 1391.524 kb on - strandat 1391.524 kb on - strandat 1391.621 kb on + strand, within CSW01_06620at 1391.631 kb on + strand, within CSW01_06620at 1391.639 kb on - strand, within CSW01_06620at 1391.678 kb on + strand, within CSW01_06620at 1391.685 kb on + strand, within CSW01_06620at 1391.686 kb on - strand, within CSW01_06620at 1391.694 kb on - strand, within CSW01_06620at 1391.728 kb on - strand, within CSW01_06620at 1391.837 kb on + strand, within CSW01_06620at 1391.876 kb on - strand, within CSW01_06620at 1391.876 kb on - strand, within CSW01_06620at 1391.906 kb on + strand, within CSW01_06620at 1392.016 kb on - strand, within CSW01_06620at 1392.016 kb on - strand, within CSW01_06620at 1392.159 kb on + strand, within CSW01_06620at 1392.167 kb on - strand, within CSW01_06620at 1392.325 kb on - strandat 1392.393 kb on - strandat 1392.394 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep1
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1,389,972 - CSW01_06605 0.81 -1.0
1,390,044 + CSW01_06605 0.86 +0.8
1,390,044 + CSW01_06605 0.86 +0.6
1,390,044 + CSW01_06605 0.86 +3.0
1,390,044 + CSW01_06605 0.86 -1.9
1,390,044 + CSW01_06605 0.86 -2.8
1,390,052 - CSW01_06605 0.86 +2.2
1,390,052 - CSW01_06605 0.86 +0.2
1,390,052 - CSW01_06605 0.86 -0.3
1,390,067 + CSW01_06605 0.87 +0.9
1,390,148 + +0.5
1,390,263 + -0.1
1,390,270 + -1.1
1,390,323 - CSW01_06610 0.10 +0.7
1,390,323 - CSW01_06610 0.10 -2.4
1,390,355 - CSW01_06610 0.16 +0.7
1,390,608 + CSW01_06610 0.60 -2.4
1,390,715 + CSW01_06610 0.78 -0.8
1,390,723 - CSW01_06610 0.80 +0.4
1,390,860 + -0.4
1,391,020 + CSW01_06615 0.18 -1.1
1,391,020 + CSW01_06615 0.18 -0.7
1,391,170 - CSW01_06615 0.50 -3.9
1,391,225 - CSW01_06615 0.61 -0.2
1,391,516 + +0.1
1,391,516 + -0.3
1,391,516 + -0.2
1,391,516 + -0.9
1,391,516 + -0.1
1,391,524 - -0.4
1,391,524 - -0.5
1,391,524 - +0.3
1,391,524 - -1.4
1,391,621 + CSW01_06620 0.17 +0.2
1,391,631 + CSW01_06620 0.18 -2.0
1,391,639 - CSW01_06620 0.19 +0.3
1,391,678 + CSW01_06620 0.23 -0.2
1,391,685 + CSW01_06620 0.24 -2.8
1,391,686 - CSW01_06620 0.24 -0.7
1,391,694 - CSW01_06620 0.25 +1.2
1,391,728 - CSW01_06620 0.29 +0.5
1,391,837 + CSW01_06620 0.41 -2.5
1,391,876 - CSW01_06620 0.46 +0.9
1,391,876 - CSW01_06620 0.46 +0.7
1,391,906 + CSW01_06620 0.49 +0.5
1,392,016 - CSW01_06620 0.62 +0.3
1,392,016 - CSW01_06620 0.62 +1.0
1,392,159 + CSW01_06620 0.78 -1.3
1,392,167 - CSW01_06620 0.79 +1.1
1,392,325 - +0.6
1,392,393 - +0.1
1,392,394 - +1.3

Or see this region's nucleotide sequence