Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_04610

Experiment: ICP3_phage_41.1_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_04605 and CSW01_04610 are separated by 204 nucleotidesCSW01_04610 and CSW01_04615 are separated by 101 nucleotides CSW01_04605: CSW01_04605 - LOG family protein, at 956,001 to 957,374 _04605 CSW01_04610: CSW01_04610 - GGDEF domain-containing protein, at 957,579 to 959,153 _04610 CSW01_04615: CSW01_04615 - hypothetical protein, at 959,255 to 961,516 _04615 Position (kb) 957 958 959 960Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 956.684 kb on + strand, within CSW01_04605at 956.689 kb on + strand, within CSW01_04605at 956.689 kb on + strand, within CSW01_04605at 956.692 kb on - strand, within CSW01_04605at 956.697 kb on - strand, within CSW01_04605at 956.697 kb on - strand, within CSW01_04605at 956.737 kb on - strand, within CSW01_04605at 956.759 kb on + strand, within CSW01_04605at 956.821 kb on + strand, within CSW01_04605at 956.824 kb on - strand, within CSW01_04605at 956.826 kb on - strand, within CSW01_04605at 956.839 kb on + strand, within CSW01_04605at 956.877 kb on - strand, within CSW01_04605at 956.905 kb on + strand, within CSW01_04605at 956.905 kb on + strand, within CSW01_04605at 956.905 kb on + strand, within CSW01_04605at 956.905 kb on + strand, within CSW01_04605at 956.908 kb on - strand, within CSW01_04605at 956.908 kb on - strand, within CSW01_04605at 956.913 kb on - strand, within CSW01_04605at 956.988 kb on + strand, within CSW01_04605at 957.005 kb on + strand, within CSW01_04605at 957.013 kb on - strand, within CSW01_04605at 957.013 kb on - strand, within CSW01_04605at 957.013 kb on - strand, within CSW01_04605at 957.013 kb on - strand, within CSW01_04605at 957.013 kb on - strand, within CSW01_04605at 957.013 kb on - strand, within CSW01_04605at 957.047 kb on + strand, within CSW01_04605at 957.072 kb on - strand, within CSW01_04605at 957.111 kb on + strand, within CSW01_04605at 957.229 kb on + strand, within CSW01_04605at 957.229 kb on - strand, within CSW01_04605at 957.239 kb on + strandat 957.340 kb on + strandat 957.353 kb on - strandat 957.376 kb on - strandat 957.376 kb on - strandat 957.650 kb on - strandat 957.886 kb on + strand, within CSW01_04610at 957.911 kb on + strand, within CSW01_04610at 957.919 kb on - strand, within CSW01_04610at 958.016 kb on + strand, within CSW01_04610at 958.024 kb on - strand, within CSW01_04610at 958.039 kb on + strand, within CSW01_04610at 958.051 kb on + strand, within CSW01_04610at 958.125 kb on + strand, within CSW01_04610at 958.158 kb on - strand, within CSW01_04610at 958.169 kb on - strand, within CSW01_04610at 958.265 kb on - strand, within CSW01_04610at 958.289 kb on + strand, within CSW01_04610at 958.289 kb on + strand, within CSW01_04610at 958.297 kb on - strand, within CSW01_04610at 958.307 kb on - strand, within CSW01_04610at 958.422 kb on - strand, within CSW01_04610at 958.423 kb on + strand, within CSW01_04610at 958.466 kb on + strand, within CSW01_04610at 958.474 kb on - strand, within CSW01_04610at 958.474 kb on - strand, within CSW01_04610at 958.487 kb on + strand, within CSW01_04610at 958.487 kb on + strand, within CSW01_04610at 958.487 kb on + strand, within CSW01_04610at 958.487 kb on + strand, within CSW01_04610at 958.487 kb on + strand, within CSW01_04610at 958.488 kb on + strand, within CSW01_04610at 958.495 kb on - strand, within CSW01_04610at 958.495 kb on - strand, within CSW01_04610at 958.495 kb on - strand, within CSW01_04610at 958.495 kb on - strand, within CSW01_04610at 958.495 kb on - strand, within CSW01_04610at 958.641 kb on - strand, within CSW01_04610at 958.805 kb on + strand, within CSW01_04610at 958.818 kb on + strand, within CSW01_04610at 959.059 kb on + strandat 959.116 kb on + strandat 959.140 kb on + strandat 959.176 kb on - strandat 959.259 kb on - strandat 959.302 kb on - strandat 959.310 kb on + strandat 959.310 kb on + strandat 959.318 kb on - strandat 959.398 kb on + strandat 959.425 kb on - strandat 959.428 kb on + strandat 959.435 kb on + strandat 959.435 kb on + strandat 959.438 kb on - strandat 959.442 kb on - strandat 959.443 kb on - strandat 959.443 kb on - strandat 959.443 kb on - strandat 959.447 kb on + strandat 959.502 kb on + strand, within CSW01_04615at 959.510 kb on - strand, within CSW01_04615at 959.510 kb on - strand, within CSW01_04615at 959.510 kb on - strand, within CSW01_04615at 959.767 kb on + strand, within CSW01_04615at 959.780 kb on + strand, within CSW01_04615at 959.812 kb on + strand, within CSW01_04615at 959.820 kb on - strand, within CSW01_04615at 959.850 kb on - strand, within CSW01_04615at 959.862 kb on + strand, within CSW01_04615at 959.865 kb on - strand, within CSW01_04615at 959.932 kb on + strand, within CSW01_04615at 960.008 kb on - strand, within CSW01_04615at 960.039 kb on - strand, within CSW01_04615at 960.039 kb on - strand, within CSW01_04615at 960.039 kb on - strand, within CSW01_04615at 960.047 kb on + strand, within CSW01_04615

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep1
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956,684 + CSW01_04605 0.50 -1.4
956,689 + CSW01_04605 0.50 -0.7
956,689 + CSW01_04605 0.50 +1.1
956,692 - CSW01_04605 0.50 +1.1
956,697 - CSW01_04605 0.51 +2.5
956,697 - CSW01_04605 0.51 +1.1
956,737 - CSW01_04605 0.54 -1.0
956,759 + CSW01_04605 0.55 -0.1
956,821 + CSW01_04605 0.60 -1.1
956,824 - CSW01_04605 0.60 -0.5
956,826 - CSW01_04605 0.60 -0.7
956,839 + CSW01_04605 0.61 -2.2
956,877 - CSW01_04605 0.64 -1.6
956,905 + CSW01_04605 0.66 -0.8
956,905 + CSW01_04605 0.66 +0.1
956,905 + CSW01_04605 0.66 -1.0
956,905 + CSW01_04605 0.66 -0.2
956,908 - CSW01_04605 0.66 -2.9
956,908 - CSW01_04605 0.66 +0.4
956,913 - CSW01_04605 0.66 -1.3
956,988 + CSW01_04605 0.72 +1.4
957,005 + CSW01_04605 0.73 +0.6
957,013 - CSW01_04605 0.74 -0.6
957,013 - CSW01_04605 0.74 +0.6
957,013 - CSW01_04605 0.74 -0.2
957,013 - CSW01_04605 0.74 +0.1
957,013 - CSW01_04605 0.74 +0.1
957,013 - CSW01_04605 0.74 -2.0
957,047 + CSW01_04605 0.76 -2.0
957,072 - CSW01_04605 0.78 +0.0
957,111 + CSW01_04605 0.81 +0.2
957,229 + CSW01_04605 0.89 +1.1
957,229 - CSW01_04605 0.89 +0.6
957,239 + -0.2
957,340 + -0.8
957,353 - +0.8
957,376 - -0.5
957,376 - +1.1
957,650 - -0.3
957,886 + CSW01_04610 0.19 +1.3
957,911 + CSW01_04610 0.21 -0.3
957,919 - CSW01_04610 0.22 -0.3
958,016 + CSW01_04610 0.28 -0.4
958,024 - CSW01_04610 0.28 +0.7
958,039 + CSW01_04610 0.29 +1.3
958,051 + CSW01_04610 0.30 +0.2
958,125 + CSW01_04610 0.35 +0.7
958,158 - CSW01_04610 0.37 +0.7
958,169 - CSW01_04610 0.37 +0.6
958,265 - CSW01_04610 0.44 +1.2
958,289 + CSW01_04610 0.45 -0.8
958,289 + CSW01_04610 0.45 -0.4
958,297 - CSW01_04610 0.46 -1.0
958,307 - CSW01_04610 0.46 +0.5
958,422 - CSW01_04610 0.54 +1.1
958,423 + CSW01_04610 0.54 +0.3
958,466 + CSW01_04610 0.56 -3.3
958,474 - CSW01_04610 0.57 +1.4
958,474 - CSW01_04610 0.57 +1.0
958,487 + CSW01_04610 0.58 -3.5
958,487 + CSW01_04610 0.58 -0.8
958,487 + CSW01_04610 0.58 +1.0
958,487 + CSW01_04610 0.58 +0.3
958,487 + CSW01_04610 0.58 +1.2
958,488 + CSW01_04610 0.58 -3.0
958,495 - CSW01_04610 0.58 -3.3
958,495 - CSW01_04610 0.58 -0.9
958,495 - CSW01_04610 0.58 +0.4
958,495 - CSW01_04610 0.58 +0.6
958,495 - CSW01_04610 0.58 +1.3
958,641 - CSW01_04610 0.67 -2.9
958,805 + CSW01_04610 0.78 -1.1
958,818 + CSW01_04610 0.79 -0.0
959,059 + -3.7
959,116 + +0.3
959,140 + -1.1
959,176 - +1.0
959,259 - +0.2
959,302 - -3.5
959,310 + +0.9
959,310 + -0.2
959,318 - -0.0
959,398 + -1.6
959,425 - +0.9
959,428 + +1.7
959,435 + +1.0
959,435 + +0.2
959,438 - -0.8
959,442 - -0.2
959,443 - +0.3
959,443 - +0.6
959,443 - +1.5
959,447 + +0.4
959,502 + CSW01_04615 0.11 -2.8
959,510 - CSW01_04615 0.11 +0.5
959,510 - CSW01_04615 0.11 -0.6
959,510 - CSW01_04615 0.11 +1.1
959,767 + CSW01_04615 0.23 +0.5
959,780 + CSW01_04615 0.23 -0.4
959,812 + CSW01_04615 0.25 -0.5
959,820 - CSW01_04615 0.25 -1.6
959,850 - CSW01_04615 0.26 -1.3
959,862 + CSW01_04615 0.27 -3.0
959,865 - CSW01_04615 0.27 -0.8
959,932 + CSW01_04615 0.30 +0.3
960,008 - CSW01_04615 0.33 -0.1
960,039 - CSW01_04615 0.35 +0.1
960,039 - CSW01_04615 0.35 -0.3
960,039 - CSW01_04615 0.35 -1.3
960,047 + CSW01_04615 0.35 -1.2

Or see this region's nucleotide sequence