Experiment: ICP3_phage_41.1_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_04470 and CSW01_04475 are separated by 174 nucleotides CSW01_04475 and CSW01_04480 are separated by 110 nucleotides CSW01_04480 and CSW01_04485 are separated by 5 nucleotides CSW01_04485 and CSW01_04490 are separated by 102 nucleotides
CSW01_04470: CSW01_04470 - phosphoribosylformylglycinamidine synthase, at 930,588 to 934,481
_04470
CSW01_04475: CSW01_04475 - IS200/IS605 family transposase IS1004, at 934,656 to 935,093
_04475
CSW01_04480: CSW01_04480 - DUF4250 domain-containing protein, at 935,204 to 935,395
_04480
CSW01_04485: CSW01_04485 - hypothetical protein, at 935,401 to 935,604
_04485
CSW01_04490: CSW01_04490 - DUF533 domain-containing protein, at 935,707 to 936,351
_04490
Position (kb) 934
935
936 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 933.692 kb on - strand, within CSW01_04470 at 933.745 kb on + strand, within CSW01_04470 at 933.768 kb on + strand, within CSW01_04470 at 933.768 kb on + strand, within CSW01_04470 at 933.776 kb on - strand, within CSW01_04470 at 933.795 kb on + strand, within CSW01_04470 at 933.836 kb on + strand, within CSW01_04470 at 933.883 kb on + strand, within CSW01_04470 at 933.883 kb on + strand, within CSW01_04470 at 933.985 kb on + strand, within CSW01_04470 at 934.003 kb on - strand, within CSW01_04470 at 934.006 kb on + strand, within CSW01_04470 at 934.014 kb on - strand, within CSW01_04470 at 934.015 kb on + strand, within CSW01_04470 at 934.015 kb on + strand, within CSW01_04470 at 934.016 kb on + strand, within CSW01_04470 at 934.016 kb on + strand, within CSW01_04470 at 934.023 kb on - strand, within CSW01_04470 at 934.023 kb on - strand, within CSW01_04470 at 934.084 kb on + strand, within CSW01_04470 at 934.095 kb on + strand at 934.105 kb on - strand at 934.190 kb on - strand at 934.284 kb on - strand at 934.288 kb on - strand at 934.289 kb on - strand at 934.337 kb on - strand at 934.490 kb on + strand at 935.398 kb on - strand at 935.536 kb on + strand, within CSW01_04485 at 935.588 kb on - strand at 935.588 kb on - strand at 935.613 kb on + strand at 935.679 kb on + strand at 935.726 kb on + strand at 935.915 kb on - strand, within CSW01_04490 at 935.944 kb on + strand, within CSW01_04490 at 935.988 kb on - strand, within CSW01_04490
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep1 remove 933,692 - CSW01_04470 0.80 -1.7 933,745 + CSW01_04470 0.81 -1.6 933,768 + CSW01_04470 0.82 +1.3 933,768 + CSW01_04470 0.82 +0.2 933,776 - CSW01_04470 0.82 -1.4 933,795 + CSW01_04470 0.82 -1.7 933,836 + CSW01_04470 0.83 +0.2 933,883 + CSW01_04470 0.85 -2.6 933,883 + CSW01_04470 0.85 +0.1 933,985 + CSW01_04470 0.87 +0.9 934,003 - CSW01_04470 0.88 -3.5 934,006 + CSW01_04470 0.88 +0.8 934,014 - CSW01_04470 0.88 -0.8 934,015 + CSW01_04470 0.88 -0.6 934,015 + CSW01_04470 0.88 +1.6 934,016 + CSW01_04470 0.88 +0.2 934,016 + CSW01_04470 0.88 +1.2 934,023 - CSW01_04470 0.88 +2.9 934,023 - CSW01_04470 0.88 -1.7 934,084 + CSW01_04470 0.90 -2.9 934,095 + -1.4 934,105 - +0.3 934,190 - -1.1 934,284 - -0.2 934,288 - -1.4 934,289 - -3.0 934,337 - -2.7 934,490 + +0.2 935,398 - -2.7 935,536 + CSW01_04485 0.66 -0.6 935,588 - +1.6 935,588 - -0.4 935,613 + +0.4 935,679 + +0.3 935,726 + +0.9 935,915 - CSW01_04490 0.32 +0.8 935,944 + CSW01_04490 0.37 -0.3 935,988 - CSW01_04490 0.44 -2.6
Or see this region's nucleotide sequence