Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_04090

Experiment: ICP3_phage_41.1_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_04080 and CSW01_04085 are separated by 33 nucleotidesCSW01_04085 and CSW01_04090 are separated by 13 nucleotidesCSW01_04090 and CSW01_04095 are separated by 70 nucleotides CSW01_04080: CSW01_04080 - hypothetical protein, at 844,021 to 844,293 _04080 CSW01_04085: CSW01_04085 - response regulator, at 844,327 to 845,010 _04085 CSW01_04090: CSW01_04090 - sensor histidine kinase, at 845,024 to 846,721 _04090 CSW01_04095: CSW01_04095 - oxaloacetate decarboxylase subunit beta, at 846,792 to 848,093 _04095 Position (kb) 845 846 847Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 844.065 kb on - strand, within CSW01_04080at 844.126 kb on + strand, within CSW01_04080at 844.136 kb on + strand, within CSW01_04080at 844.136 kb on + strand, within CSW01_04080at 844.136 kb on - strand, within CSW01_04080at 844.144 kb on - strand, within CSW01_04080at 844.144 kb on - strand, within CSW01_04080at 844.247 kb on + strand, within CSW01_04080at 844.259 kb on + strand, within CSW01_04080at 844.333 kb on - strandat 844.347 kb on + strandat 844.374 kb on + strandat 844.382 kb on - strandat 844.480 kb on - strand, within CSW01_04085at 844.538 kb on - strand, within CSW01_04085at 844.565 kb on + strand, within CSW01_04085at 844.688 kb on + strand, within CSW01_04085at 844.717 kb on + strand, within CSW01_04085at 844.717 kb on + strand, within CSW01_04085at 844.725 kb on - strand, within CSW01_04085at 844.725 kb on - strand, within CSW01_04085at 844.725 kb on - strand, within CSW01_04085at 844.800 kb on - strand, within CSW01_04085at 844.800 kb on - strand, within CSW01_04085at 844.941 kb on + strand, within CSW01_04085at 844.949 kb on - strandat 844.949 kb on - strandat 844.949 kb on - strandat 844.996 kb on + strandat 845.113 kb on + strandat 845.170 kb on + strandat 845.176 kb on + strandat 845.176 kb on + strandat 845.178 kb on - strandat 845.222 kb on - strand, within CSW01_04090at 845.256 kb on + strand, within CSW01_04090at 845.284 kb on + strand, within CSW01_04090at 845.357 kb on + strand, within CSW01_04090at 845.363 kb on + strand, within CSW01_04090at 845.395 kb on + strand, within CSW01_04090at 845.395 kb on + strand, within CSW01_04090at 845.403 kb on + strand, within CSW01_04090at 845.403 kb on + strand, within CSW01_04090at 845.403 kb on + strand, within CSW01_04090at 845.403 kb on + strand, within CSW01_04090at 845.403 kb on + strand, within CSW01_04090at 845.411 kb on - strand, within CSW01_04090at 845.431 kb on - strand, within CSW01_04090at 845.447 kb on + strand, within CSW01_04090at 845.673 kb on - strand, within CSW01_04090at 845.673 kb on - strand, within CSW01_04090at 845.684 kb on + strand, within CSW01_04090at 845.703 kb on - strand, within CSW01_04090at 845.761 kb on + strand, within CSW01_04090at 845.761 kb on + strand, within CSW01_04090at 845.761 kb on + strand, within CSW01_04090at 845.761 kb on + strand, within CSW01_04090at 845.761 kb on + strand, within CSW01_04090at 845.766 kb on + strand, within CSW01_04090at 845.769 kb on - strand, within CSW01_04090at 845.769 kb on - strand, within CSW01_04090at 845.769 kb on - strand, within CSW01_04090at 845.769 kb on - strand, within CSW01_04090at 845.769 kb on - strand, within CSW01_04090at 845.783 kb on + strand, within CSW01_04090at 845.811 kb on - strand, within CSW01_04090at 845.903 kb on + strand, within CSW01_04090at 845.903 kb on + strand, within CSW01_04090at 846.043 kb on + strand, within CSW01_04090at 846.043 kb on + strand, within CSW01_04090at 846.048 kb on + strand, within CSW01_04090at 846.049 kb on + strand, within CSW01_04090at 846.051 kb on - strand, within CSW01_04090at 846.051 kb on - strand, within CSW01_04090at 846.144 kb on + strand, within CSW01_04090at 846.152 kb on - strand, within CSW01_04090at 846.171 kb on + strand, within CSW01_04090at 846.177 kb on + strand, within CSW01_04090at 846.177 kb on + strand, within CSW01_04090at 846.185 kb on - strand, within CSW01_04090at 846.185 kb on - strand, within CSW01_04090at 846.195 kb on + strand, within CSW01_04090at 846.203 kb on - strand, within CSW01_04090at 846.285 kb on - strand, within CSW01_04090at 846.328 kb on + strand, within CSW01_04090at 846.336 kb on - strand, within CSW01_04090at 846.336 kb on - strand, within CSW01_04090at 846.344 kb on + strand, within CSW01_04090at 846.405 kb on + strand, within CSW01_04090at 846.405 kb on + strand, within CSW01_04090at 846.451 kb on + strand, within CSW01_04090at 846.568 kb on - strandat 846.638 kb on + strandat 846.669 kb on - strandat 846.729 kb on + strandat 846.843 kb on - strandat 846.845 kb on - strandat 846.848 kb on - strandat 846.862 kb on - strandat 846.871 kb on - strandat 846.912 kb on - strandat 846.931 kb on + strand, within CSW01_04095at 847.004 kb on - strand, within CSW01_04095at 847.075 kb on + strand, within CSW01_04095at 847.082 kb on - strand, within CSW01_04095at 847.083 kb on - strand, within CSW01_04095at 847.114 kb on - strand, within CSW01_04095at 847.114 kb on - strand, within CSW01_04095at 847.144 kb on + strand, within CSW01_04095at 847.168 kb on + strand, within CSW01_04095at 847.216 kb on + strand, within CSW01_04095at 847.251 kb on - strand, within CSW01_04095at 847.251 kb on - strand, within CSW01_04095at 847.346 kb on + strand, within CSW01_04095at 847.357 kb on + strand, within CSW01_04095at 847.392 kb on + strand, within CSW01_04095at 847.392 kb on + strand, within CSW01_04095at 847.413 kb on + strand, within CSW01_04095at 847.538 kb on + strand, within CSW01_04095at 847.538 kb on + strand, within CSW01_04095at 847.538 kb on + strand, within CSW01_04095at 847.538 kb on + strand, within CSW01_04095at 847.538 kb on + strand, within CSW01_04095at 847.538 kb on + strand, within CSW01_04095at 847.538 kb on + strand, within CSW01_04095at 847.538 kb on + strand, within CSW01_04095at 847.538 kb on + strand, within CSW01_04095at 847.546 kb on - strand, within CSW01_04095at 847.546 kb on - strand, within CSW01_04095at 847.546 kb on - strand, within CSW01_04095at 847.546 kb on - strand, within CSW01_04095at 847.546 kb on - strand, within CSW01_04095at 847.546 kb on - strand, within CSW01_04095at 847.546 kb on - strand, within CSW01_04095at 847.548 kb on + strand, within CSW01_04095at 847.561 kb on - strand, within CSW01_04095at 847.563 kb on + strand, within CSW01_04095at 847.568 kb on + strand, within CSW01_04095at 847.608 kb on - strand, within CSW01_04095at 847.615 kb on + strand, within CSW01_04095at 847.623 kb on - strand, within CSW01_04095at 847.623 kb on - strand, within CSW01_04095at 847.700 kb on + strand, within CSW01_04095at 847.712 kb on + strand, within CSW01_04095at 847.716 kb on - strand, within CSW01_04095

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep1
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844,065 - CSW01_04080 0.16 -4.5
844,126 + CSW01_04080 0.38 +1.0
844,136 + CSW01_04080 0.42 -1.6
844,136 + CSW01_04080 0.42 +1.3
844,136 - CSW01_04080 0.42 -1.4
844,144 - CSW01_04080 0.45 +0.4
844,144 - CSW01_04080 0.45 -0.1
844,247 + CSW01_04080 0.83 -1.0
844,259 + CSW01_04080 0.87 -0.6
844,333 - -2.8
844,347 + +1.5
844,374 + +1.6
844,382 - +1.5
844,480 - CSW01_04085 0.22 -0.6
844,538 - CSW01_04085 0.31 +1.5
844,565 + CSW01_04085 0.35 +1.2
844,688 + CSW01_04085 0.53 -0.6
844,717 + CSW01_04085 0.57 +2.4
844,717 + CSW01_04085 0.57 +0.2
844,725 - CSW01_04085 0.58 +0.6
844,725 - CSW01_04085 0.58 -2.6
844,725 - CSW01_04085 0.58 -0.9
844,800 - CSW01_04085 0.69 -3.1
844,800 - CSW01_04085 0.69 +0.7
844,941 + CSW01_04085 0.90 -2.9
844,949 - -2.1
844,949 - +1.3
844,949 - +0.4
844,996 + +0.6
845,113 + -3.0
845,170 + -0.3
845,176 + -0.2
845,176 + +0.7
845,178 - +0.8
845,222 - CSW01_04090 0.12 +0.4
845,256 + CSW01_04090 0.14 +0.4
845,284 + CSW01_04090 0.15 +2.8
845,357 + CSW01_04090 0.20 +1.0
845,363 + CSW01_04090 0.20 +0.1
845,395 + CSW01_04090 0.22 -1.8
845,395 + CSW01_04090 0.22 -0.8
845,403 + CSW01_04090 0.22 +0.9
845,403 + CSW01_04090 0.22 +0.6
845,403 + CSW01_04090 0.22 +0.7
845,403 + CSW01_04090 0.22 +1.8
845,403 + CSW01_04090 0.22 +1.1
845,411 - CSW01_04090 0.23 -0.8
845,431 - CSW01_04090 0.24 -1.6
845,447 + CSW01_04090 0.25 -1.9
845,673 - CSW01_04090 0.38 +2.4
845,673 - CSW01_04090 0.38 +0.2
845,684 + CSW01_04090 0.39 -1.8
845,703 - CSW01_04090 0.40 -2.0
845,761 + CSW01_04090 0.43 -0.2
845,761 + CSW01_04090 0.43 -0.7
845,761 + CSW01_04090 0.43 +1.2
845,761 + CSW01_04090 0.43 +2.3
845,761 + CSW01_04090 0.43 +0.2
845,766 + CSW01_04090 0.44 -1.8
845,769 - CSW01_04090 0.44 -0.8
845,769 - CSW01_04090 0.44 -0.1
845,769 - CSW01_04090 0.44 -3.2
845,769 - CSW01_04090 0.44 -2.8
845,769 - CSW01_04090 0.44 +0.2
845,783 + CSW01_04090 0.45 +0.7
845,811 - CSW01_04090 0.46 +0.8
845,903 + CSW01_04090 0.52 -0.9
845,903 + CSW01_04090 0.52 +1.3
846,043 + CSW01_04090 0.60 +0.7
846,043 + CSW01_04090 0.60 +0.3
846,048 + CSW01_04090 0.60 -3.3
846,049 + CSW01_04090 0.60 -0.2
846,051 - CSW01_04090 0.60 +0.9
846,051 - CSW01_04090 0.60 -0.1
846,144 + CSW01_04090 0.66 +0.5
846,152 - CSW01_04090 0.66 -2.0
846,171 + CSW01_04090 0.68 +1.1
846,177 + CSW01_04090 0.68 +0.7
846,177 + CSW01_04090 0.68 -2.1
846,185 - CSW01_04090 0.68 +0.4
846,185 - CSW01_04090 0.68 -3.0
846,195 + CSW01_04090 0.69 -3.7
846,203 - CSW01_04090 0.69 -0.1
846,285 - CSW01_04090 0.74 -2.3
846,328 + CSW01_04090 0.77 +1.7
846,336 - CSW01_04090 0.77 -2.9
846,336 - CSW01_04090 0.77 +0.5
846,344 + CSW01_04090 0.78 +0.8
846,405 + CSW01_04090 0.81 +2.7
846,405 + CSW01_04090 0.81 +0.5
846,451 + CSW01_04090 0.84 +0.2
846,568 - +1.8
846,638 + +0.1
846,669 - +0.1
846,729 + -0.2
846,843 - +1.5
846,845 - -3.3
846,848 - +1.0
846,862 - -0.0
846,871 - -2.0
846,912 - +2.1
846,931 + CSW01_04095 0.11 +1.2
847,004 - CSW01_04095 0.16 -1.1
847,075 + CSW01_04095 0.22 -1.3
847,082 - CSW01_04095 0.22 -1.0
847,083 - CSW01_04095 0.22 +1.7
847,114 - CSW01_04095 0.25 -0.7
847,114 - CSW01_04095 0.25 +1.1
847,144 + CSW01_04095 0.27 -2.8
847,168 + CSW01_04095 0.29 +1.1
847,216 + CSW01_04095 0.33 +0.1
847,251 - CSW01_04095 0.35 -0.3
847,251 - CSW01_04095 0.35 +0.4
847,346 + CSW01_04095 0.43 +0.8
847,357 + CSW01_04095 0.43 -3.9
847,392 + CSW01_04095 0.46 -2.2
847,392 + CSW01_04095 0.46 -2.8
847,413 + CSW01_04095 0.48 -2.3
847,538 + CSW01_04095 0.57 +1.0
847,538 + CSW01_04095 0.57 -0.7
847,538 + CSW01_04095 0.57 -2.8
847,538 + CSW01_04095 0.57 +0.6
847,538 + CSW01_04095 0.57 -0.3
847,538 + CSW01_04095 0.57 +1.5
847,538 + CSW01_04095 0.57 +0.5
847,538 + CSW01_04095 0.57 -0.4
847,538 + CSW01_04095 0.57 -3.1
847,546 - CSW01_04095 0.58 -2.0
847,546 - CSW01_04095 0.58 -1.5
847,546 - CSW01_04095 0.58 +0.5
847,546 - CSW01_04095 0.58 +1.9
847,546 - CSW01_04095 0.58 -2.5
847,546 - CSW01_04095 0.58 +0.7
847,546 - CSW01_04095 0.58 +0.7
847,548 + CSW01_04095 0.58 -3.2
847,561 - CSW01_04095 0.59 -2.2
847,563 + CSW01_04095 0.59 -0.3
847,568 + CSW01_04095 0.60 +0.8
847,608 - CSW01_04095 0.63 +0.4
847,615 + CSW01_04095 0.63 +1.5
847,623 - CSW01_04095 0.64 -1.7
847,623 - CSW01_04095 0.64 +1.4
847,700 + CSW01_04095 0.70 -0.3
847,712 + CSW01_04095 0.71 -2.8
847,716 - CSW01_04095 0.71 +0.5

Or see this region's nucleotide sequence