Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03860

Experiment: ICP3_phage_41.1_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_03850 and CSW01_03855 are separated by 104 nucleotidesCSW01_03855 and CSW01_03860 are separated by 21 nucleotidesCSW01_03860 and CSW01_03865 are separated by 14 nucleotides CSW01_03850: CSW01_03850 - tRNA guanosine(34) transglycosylase Tgt, at 792,987 to 794,126 _03850 CSW01_03855: CSW01_03855 - preprotein translocase subunit YajC, at 794,231 to 794,563 _03855 CSW01_03860: CSW01_03860 - protein translocase subunit SecD, at 794,585 to 796,438 _03860 CSW01_03865: CSW01_03865 - protein translocase subunit SecF, at 796,453 to 797,400 _03865 Position (kb) 794 795 796 797Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 793.626 kb on - strand, within CSW01_03850at 793.633 kb on + strand, within CSW01_03850at 793.633 kb on + strand, within CSW01_03850at 793.641 kb on - strand, within CSW01_03850at 793.641 kb on - strand, within CSW01_03850at 793.641 kb on - strand, within CSW01_03850at 793.667 kb on - strand, within CSW01_03850at 793.677 kb on + strand, within CSW01_03850at 793.687 kb on + strand, within CSW01_03850at 793.695 kb on - strand, within CSW01_03850at 793.695 kb on - strand, within CSW01_03850at 793.695 kb on - strand, within CSW01_03850at 793.737 kb on + strand, within CSW01_03850at 793.748 kb on + strand, within CSW01_03850at 793.909 kb on - strand, within CSW01_03850at 793.969 kb on + strand, within CSW01_03850at 793.995 kb on - strand, within CSW01_03850at 794.050 kb on + strandat 794.138 kb on + strandat 794.138 kb on + strandat 794.196 kb on + strandat 794.338 kb on + strand, within CSW01_03855at 794.353 kb on + strand, within CSW01_03855at 794.405 kb on + strand, within CSW01_03855at 794.411 kb on + strand, within CSW01_03855at 794.411 kb on + strand, within CSW01_03855at 794.419 kb on - strand, within CSW01_03855at 794.419 kb on - strand, within CSW01_03855at 794.419 kb on - strand, within CSW01_03855at 794.426 kb on + strand, within CSW01_03855at 794.437 kb on - strand, within CSW01_03855at 794.458 kb on + strand, within CSW01_03855at 794.536 kb on + strandat 794.536 kb on + strandat 794.585 kb on + strandat 794.587 kb on + strandat 794.593 kb on + strandat 794.593 kb on - strandat 794.593 kb on - strandat 794.595 kb on - strandat 794.639 kb on + strandat 794.686 kb on - strandat 794.712 kb on + strandat 794.763 kb on - strandat 794.872 kb on - strand, within CSW01_03860at 794.955 kb on + strand, within CSW01_03860at 794.955 kb on + strand, within CSW01_03860at 794.963 kb on - strand, within CSW01_03860at 794.972 kb on + strand, within CSW01_03860at 795.048 kb on + strand, within CSW01_03860at 795.053 kb on + strand, within CSW01_03860at 795.134 kb on - strand, within CSW01_03860at 795.134 kb on - strand, within CSW01_03860at 795.184 kb on - strand, within CSW01_03860at 795.184 kb on - strand, within CSW01_03860at 795.280 kb on - strand, within CSW01_03860at 795.301 kb on + strand, within CSW01_03860at 795.313 kb on + strand, within CSW01_03860at 795.313 kb on + strand, within CSW01_03860at 795.317 kb on - strand, within CSW01_03860at 795.367 kb on + strand, within CSW01_03860at 795.377 kb on + strand, within CSW01_03860at 795.377 kb on + strand, within CSW01_03860at 795.530 kb on - strand, within CSW01_03860at 795.530 kb on - strand, within CSW01_03860at 795.556 kb on - strand, within CSW01_03860at 795.608 kb on + strand, within CSW01_03860at 795.610 kb on + strand, within CSW01_03860at 795.618 kb on - strand, within CSW01_03860at 795.655 kb on - strand, within CSW01_03860at 795.733 kb on + strand, within CSW01_03860at 795.736 kb on - strand, within CSW01_03860at 795.854 kb on + strand, within CSW01_03860at 795.854 kb on + strand, within CSW01_03860at 795.862 kb on - strand, within CSW01_03860at 795.873 kb on - strand, within CSW01_03860at 795.909 kb on + strand, within CSW01_03860at 795.917 kb on - strand, within CSW01_03860at 795.917 kb on - strand, within CSW01_03860at 795.950 kb on + strand, within CSW01_03860at 795.960 kb on + strand, within CSW01_03860at 795.988 kb on + strand, within CSW01_03860at 796.091 kb on + strand, within CSW01_03860at 796.091 kb on + strand, within CSW01_03860at 796.099 kb on - strand, within CSW01_03860at 796.099 kb on - strand, within CSW01_03860at 796.189 kb on - strand, within CSW01_03860at 796.225 kb on - strand, within CSW01_03860at 796.236 kb on - strand, within CSW01_03860at 796.250 kb on - strand, within CSW01_03860at 796.320 kb on - strandat 796.361 kb on - strandat 796.415 kb on + strandat 796.580 kb on - strand, within CSW01_03865at 796.624 kb on - strand, within CSW01_03865at 796.712 kb on + strand, within CSW01_03865at 796.741 kb on + strand, within CSW01_03865at 796.981 kb on + strand, within CSW01_03865at 797.000 kb on - strand, within CSW01_03865at 797.045 kb on + strand, within CSW01_03865at 797.047 kb on + strand, within CSW01_03865at 797.047 kb on + strand, within CSW01_03865at 797.052 kb on + strand, within CSW01_03865at 797.052 kb on + strand, within CSW01_03865at 797.055 kb on - strand, within CSW01_03865at 797.055 kb on - strand, within CSW01_03865at 797.183 kb on + strand, within CSW01_03865at 797.246 kb on + strand, within CSW01_03865at 797.254 kb on - strand, within CSW01_03865at 797.270 kb on + strand, within CSW01_03865at 797.278 kb on - strand, within CSW01_03865at 797.278 kb on - strand, within CSW01_03865at 797.278 kb on - strand, within CSW01_03865at 797.330 kb on + strandat 797.375 kb on + strandat 797.389 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep1
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793,626 - CSW01_03850 0.56 +1.2
793,633 + CSW01_03850 0.57 -0.5
793,633 + CSW01_03850 0.57 +0.7
793,641 - CSW01_03850 0.57 +0.7
793,641 - CSW01_03850 0.57 +0.1
793,641 - CSW01_03850 0.57 -2.2
793,667 - CSW01_03850 0.60 -3.1
793,677 + CSW01_03850 0.61 -0.7
793,687 + CSW01_03850 0.61 +2.1
793,695 - CSW01_03850 0.62 +0.8
793,695 - CSW01_03850 0.62 -1.6
793,695 - CSW01_03850 0.62 +0.2
793,737 + CSW01_03850 0.66 +2.2
793,748 + CSW01_03850 0.67 +0.4
793,909 - CSW01_03850 0.81 +0.4
793,969 + CSW01_03850 0.86 -2.8
793,995 - CSW01_03850 0.88 -0.5
794,050 + -0.7
794,138 + -1.2
794,138 + -0.8
794,196 + +1.5
794,338 + CSW01_03855 0.32 -0.1
794,353 + CSW01_03855 0.37 -4.2
794,405 + CSW01_03855 0.52 +0.1
794,411 + CSW01_03855 0.54 +0.4
794,411 + CSW01_03855 0.54 -3.5
794,419 - CSW01_03855 0.56 +0.4
794,419 - CSW01_03855 0.56 +0.8
794,419 - CSW01_03855 0.56 -0.2
794,426 + CSW01_03855 0.59 +1.1
794,437 - CSW01_03855 0.62 +0.0
794,458 + CSW01_03855 0.68 +2.3
794,536 + -0.1
794,536 + -1.1
794,585 + -2.7
794,587 + +0.0
794,593 + +0.2
794,593 - +0.3
794,593 - -0.1
794,595 - -0.1
794,639 + -3.9
794,686 - -0.7
794,712 + -1.3
794,763 - -3.0
794,872 - CSW01_03860 0.15 -0.5
794,955 + CSW01_03860 0.20 -0.6
794,955 + CSW01_03860 0.20 +0.4
794,963 - CSW01_03860 0.20 +0.8
794,972 + CSW01_03860 0.21 +0.3
795,048 + CSW01_03860 0.25 -3.4
795,053 + CSW01_03860 0.25 -1.9
795,134 - CSW01_03860 0.30 -3.4
795,134 - CSW01_03860 0.30 +0.6
795,184 - CSW01_03860 0.32 -1.4
795,184 - CSW01_03860 0.32 -1.4
795,280 - CSW01_03860 0.37 -1.4
795,301 + CSW01_03860 0.39 -2.9
795,313 + CSW01_03860 0.39 +0.1
795,313 + CSW01_03860 0.39 -0.7
795,317 - CSW01_03860 0.39 +0.5
795,367 + CSW01_03860 0.42 +1.0
795,377 + CSW01_03860 0.43 -0.3
795,377 + CSW01_03860 0.43 +0.7
795,530 - CSW01_03860 0.51 -2.9
795,530 - CSW01_03860 0.51 +0.7
795,556 - CSW01_03860 0.52 +0.3
795,608 + CSW01_03860 0.55 +0.4
795,610 + CSW01_03860 0.55 +2.0
795,618 - CSW01_03860 0.56 +0.2
795,655 - CSW01_03860 0.58 +0.1
795,733 + CSW01_03860 0.62 +1.6
795,736 - CSW01_03860 0.62 +0.7
795,854 + CSW01_03860 0.68 +0.4
795,854 + CSW01_03860 0.68 -3.1
795,862 - CSW01_03860 0.69 -0.7
795,873 - CSW01_03860 0.69 -0.5
795,909 + CSW01_03860 0.71 -0.4
795,917 - CSW01_03860 0.72 +1.2
795,917 - CSW01_03860 0.72 -1.2
795,950 + CSW01_03860 0.74 -1.8
795,960 + CSW01_03860 0.74 +0.1
795,988 + CSW01_03860 0.76 -2.9
796,091 + CSW01_03860 0.81 -0.3
796,091 + CSW01_03860 0.81 -4.6
796,099 - CSW01_03860 0.82 -0.0
796,099 - CSW01_03860 0.82 +0.3
796,189 - CSW01_03860 0.87 -2.1
796,225 - CSW01_03860 0.88 -4.7
796,236 - CSW01_03860 0.89 +0.8
796,250 - CSW01_03860 0.90 +0.8
796,320 - +1.0
796,361 - +0.5
796,415 + -0.2
796,580 - CSW01_03865 0.13 -3.5
796,624 - CSW01_03865 0.18 +0.1
796,712 + CSW01_03865 0.27 -0.1
796,741 + CSW01_03865 0.30 +0.2
796,981 + CSW01_03865 0.56 +0.4
797,000 - CSW01_03865 0.58 -3.1
797,045 + CSW01_03865 0.62 -2.7
797,047 + CSW01_03865 0.63 +1.4
797,047 + CSW01_03865 0.63 +1.5
797,052 + CSW01_03865 0.63 +0.6
797,052 + CSW01_03865 0.63 -2.2
797,055 - CSW01_03865 0.64 +0.3
797,055 - CSW01_03865 0.64 -3.5
797,183 + CSW01_03865 0.77 +0.5
797,246 + CSW01_03865 0.84 +2.0
797,254 - CSW01_03865 0.84 -3.7
797,270 + CSW01_03865 0.86 +1.4
797,278 - CSW01_03865 0.87 +2.1
797,278 - CSW01_03865 0.87 +0.2
797,278 - CSW01_03865 0.87 +0.8
797,330 + -1.0
797,375 + +1.9
797,389 - +1.0

Or see this region's nucleotide sequence