Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03820

Experiment: ICP3_phage_41.1_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_03815 and CSW01_03820 are separated by 221 nucleotidesCSW01_03820 and CSW01_03825 are separated by 550 nucleotides CSW01_03815: CSW01_03815 - peroxidase, at 785,412 to 786,017 _03815 CSW01_03820: CSW01_03820 - hydrogen peroxide-inducible genes activator, at 786,239 to 787,144 _03820 CSW01_03825: CSW01_03825 - malate synthase A, at 787,695 to 789,365 _03825 Position (kb) 786 787 788Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 785.271 kb on + strandat 785.311 kb on - strandat 785.385 kb on + strandat 785.638 kb on - strand, within CSW01_03815at 785.664 kb on - strand, within CSW01_03815at 785.688 kb on - strand, within CSW01_03815at 785.755 kb on + strand, within CSW01_03815at 785.763 kb on - strand, within CSW01_03815at 785.799 kb on + strand, within CSW01_03815at 785.807 kb on + strand, within CSW01_03815at 785.815 kb on - strand, within CSW01_03815at 785.815 kb on - strand, within CSW01_03815at 785.815 kb on - strand, within CSW01_03815at 785.866 kb on - strand, within CSW01_03815at 786.025 kb on + strandat 786.044 kb on + strandat 786.165 kb on + strandat 786.175 kb on + strandat 786.175 kb on + strandat 786.175 kb on + strandat 786.175 kb on + strandat 786.175 kb on + strandat 786.175 kb on + strandat 786.175 kb on + strandat 786.175 kb on + strandat 786.175 kb on + strandat 786.175 kb on + strandat 786.175 kb on + strandat 786.175 kb on + strandat 786.175 kb on + strandat 786.175 kb on + strandat 786.175 kb on + strandat 786.175 kb on + strandat 786.183 kb on - strandat 786.183 kb on - strandat 786.183 kb on - strandat 786.183 kb on - strandat 786.183 kb on - strandat 786.183 kb on - strandat 786.183 kb on - strandat 786.183 kb on - strandat 786.183 kb on - strandat 786.199 kb on - strandat 786.255 kb on + strandat 786.263 kb on - strandat 786.500 kb on + strand, within CSW01_03820at 786.528 kb on - strand, within CSW01_03820at 786.604 kb on + strand, within CSW01_03820at 786.614 kb on + strand, within CSW01_03820at 786.663 kb on - strand, within CSW01_03820at 786.670 kb on - strand, within CSW01_03820at 786.672 kb on + strand, within CSW01_03820at 786.672 kb on + strand, within CSW01_03820at 786.672 kb on + strand, within CSW01_03820at 786.672 kb on + strand, within CSW01_03820at 786.674 kb on + strand, within CSW01_03820at 786.675 kb on - strand, within CSW01_03820at 786.680 kb on - strand, within CSW01_03820at 786.682 kb on - strand, within CSW01_03820at 786.692 kb on + strand, within CSW01_03820at 786.704 kb on + strand, within CSW01_03820at 786.730 kb on - strand, within CSW01_03820at 786.730 kb on - strand, within CSW01_03820at 786.807 kb on + strand, within CSW01_03820at 786.815 kb on - strand, within CSW01_03820at 786.820 kb on - strand, within CSW01_03820at 786.853 kb on + strand, within CSW01_03820at 786.853 kb on + strand, within CSW01_03820at 786.853 kb on + strand, within CSW01_03820at 786.855 kb on + strand, within CSW01_03820at 786.863 kb on - strand, within CSW01_03820at 786.863 kb on - strand, within CSW01_03820at 786.920 kb on - strand, within CSW01_03820at 786.929 kb on + strand, within CSW01_03820at 786.944 kb on - strand, within CSW01_03820at 787.104 kb on + strandat 787.125 kb on - strandat 787.151 kb on + strandat 787.178 kb on + strandat 787.259 kb on + strandat 787.588 kb on + strandat 787.595 kb on - strandat 787.608 kb on - strandat 787.633 kb on - strandat 787.747 kb on + strandat 787.779 kb on + strandat 787.816 kb on - strandat 787.823 kb on - strandat 788.016 kb on - strand, within CSW01_03825

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep1
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785,271 + -0.9
785,311 - -0.8
785,385 + -0.4
785,638 - CSW01_03815 0.37 +3.6
785,664 - CSW01_03815 0.42 +1.3
785,688 - CSW01_03815 0.46 +1.9
785,755 + CSW01_03815 0.57 +0.4
785,763 - CSW01_03815 0.58 -1.8
785,799 + CSW01_03815 0.64 +0.2
785,807 + CSW01_03815 0.65 +2.4
785,815 - CSW01_03815 0.67 +3.8
785,815 - CSW01_03815 0.67 +1.7
785,815 - CSW01_03815 0.67 +3.4
785,866 - CSW01_03815 0.75 +2.6
786,025 + -2.1
786,044 + +1.0
786,165 + -0.5
786,175 + -1.3
786,175 + +0.8
786,175 + -1.7
786,175 + -0.3
786,175 + +0.2
786,175 + -2.5
786,175 + +0.4
786,175 + +1.2
786,175 + +1.1
786,175 + +0.8
786,175 + -0.5
786,175 + -1.7
786,175 + +0.4
786,175 + -0.9
786,175 + +0.4
786,175 + -1.5
786,183 - -0.1
786,183 - +0.3
786,183 - +0.4
786,183 - -0.3
786,183 - +0.8
786,183 - +1.0
786,183 - -3.1
786,183 - -0.9
786,183 - +0.4
786,199 - -0.2
786,255 + +0.5
786,263 - +0.9
786,500 + CSW01_03820 0.29 -0.7
786,528 - CSW01_03820 0.32 -3.3
786,604 + CSW01_03820 0.40 -0.8
786,614 + CSW01_03820 0.41 +0.4
786,663 - CSW01_03820 0.47 +0.0
786,670 - CSW01_03820 0.48 +1.0
786,672 + CSW01_03820 0.48 +1.1
786,672 + CSW01_03820 0.48 +1.5
786,672 + CSW01_03820 0.48 +0.6
786,672 + CSW01_03820 0.48 -0.2
786,674 + CSW01_03820 0.48 -2.0
786,675 - CSW01_03820 0.48 +2.5
786,680 - CSW01_03820 0.49 +1.0
786,682 - CSW01_03820 0.49 +0.5
786,692 + CSW01_03820 0.50 +0.1
786,704 + CSW01_03820 0.51 -2.8
786,730 - CSW01_03820 0.54 +0.1
786,730 - CSW01_03820 0.54 +1.9
786,807 + CSW01_03820 0.63 -2.0
786,815 - CSW01_03820 0.64 +0.5
786,820 - CSW01_03820 0.64 +1.0
786,853 + CSW01_03820 0.68 +0.4
786,853 + CSW01_03820 0.68 +0.9
786,853 + CSW01_03820 0.68 -2.2
786,855 + CSW01_03820 0.68 -3.1
786,863 - CSW01_03820 0.69 +1.7
786,863 - CSW01_03820 0.69 -2.5
786,920 - CSW01_03820 0.75 -0.3
786,929 + CSW01_03820 0.76 -1.8
786,944 - CSW01_03820 0.78 -2.7
787,104 + +0.9
787,125 - +2.6
787,151 + -0.8
787,178 + +0.2
787,259 + -1.0
787,588 + +0.9
787,595 - -0.2
787,608 - +0.5
787,633 - -2.4
787,747 + -3.6
787,779 + -0.8
787,816 - +1.5
787,823 - -1.0
788,016 - CSW01_03825 0.19 +1.2

Or see this region's nucleotide sequence