Experiment: ICP3_phage_41.1_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_03530 and CSW01_03535 are separated by 28 nucleotides CSW01_03535 and CSW01_03540 are separated by 9 nucleotides CSW01_03540 and CSW01_03545 are separated by 92 nucleotides
CSW01_03530: CSW01_03530 - sulfite exporter TauE/SafE family protein, at 718,664 to 719,458
_03530
CSW01_03535: CSW01_03535 - prolipoprotein diacylglyceryl transferase, at 719,487 to 720,302
_03535
CSW01_03540: CSW01_03540 - thymidylate synthase, at 720,312 to 721,163
_03540
CSW01_03545: CSW01_03545 - Na/Pi cotransporter family protein, at 721,256 to 722,404
_03545
Position (kb) 720
721
722 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 719.391 kb on + strand at 719.452 kb on - strand at 721.191 kb on - strand at 721.357 kb on + strand at 721.365 kb on - strand at 721.365 kb on - strand at 721.392 kb on + strand, within CSW01_03545 at 721.496 kb on + strand, within CSW01_03545 at 721.504 kb on - strand, within CSW01_03545 at 721.567 kb on + strand, within CSW01_03545 at 721.575 kb on - strand, within CSW01_03545 at 721.588 kb on + strand, within CSW01_03545 at 721.588 kb on + strand, within CSW01_03545 at 721.596 kb on - strand, within CSW01_03545 at 721.596 kb on - strand, within CSW01_03545 at 721.598 kb on + strand, within CSW01_03545 at 721.621 kb on - strand, within CSW01_03545 at 721.634 kb on - strand, within CSW01_03545 at 721.648 kb on - strand, within CSW01_03545 at 721.724 kb on - strand, within CSW01_03545 at 721.797 kb on + strand, within CSW01_03545 at 721.797 kb on + strand, within CSW01_03545 at 721.805 kb on - strand, within CSW01_03545 at 721.805 kb on - strand, within CSW01_03545 at 721.864 kb on + strand, within CSW01_03545 at 721.872 kb on - strand, within CSW01_03545 at 721.919 kb on + strand, within CSW01_03545 at 721.919 kb on + strand, within CSW01_03545 at 721.967 kb on + strand, within CSW01_03545 at 721.975 kb on - strand, within CSW01_03545 at 722.012 kb on + strand, within CSW01_03545 at 722.020 kb on - strand, within CSW01_03545 at 722.032 kb on + strand, within CSW01_03545 at 722.032 kb on + strand, within CSW01_03545 at 722.055 kb on + strand, within CSW01_03545 at 722.072 kb on + strand, within CSW01_03545 at 722.097 kb on + strand, within CSW01_03545 at 722.097 kb on + strand, within CSW01_03545 at 722.132 kb on + strand, within CSW01_03545
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep1 remove 719,391 + -2.3 719,452 - -1.7 721,191 - +1.0 721,357 + +1.7 721,365 - -3.2 721,365 - +0.1 721,392 + CSW01_03545 0.12 +0.1 721,496 + CSW01_03545 0.21 +0.5 721,504 - CSW01_03545 0.22 -2.6 721,567 + CSW01_03545 0.27 +2.4 721,575 - CSW01_03545 0.28 +2.3 721,588 + CSW01_03545 0.29 +0.4 721,588 + CSW01_03545 0.29 -0.5 721,596 - CSW01_03545 0.30 +0.8 721,596 - CSW01_03545 0.30 -2.0 721,598 + CSW01_03545 0.30 -1.4 721,621 - CSW01_03545 0.32 +0.3 721,634 - CSW01_03545 0.33 +3.0 721,648 - CSW01_03545 0.34 -2.2 721,724 - CSW01_03545 0.41 +2.6 721,797 + CSW01_03545 0.47 +1.1 721,797 + CSW01_03545 0.47 -2.2 721,805 - CSW01_03545 0.48 +0.6 721,805 - CSW01_03545 0.48 -3.3 721,864 + CSW01_03545 0.53 +1.5 721,872 - CSW01_03545 0.54 -3.6 721,919 + CSW01_03545 0.58 -0.4 721,919 + CSW01_03545 0.58 -2.5 721,967 + CSW01_03545 0.62 -0.6 721,975 - CSW01_03545 0.63 -0.0 722,012 + CSW01_03545 0.66 -2.6 722,020 - CSW01_03545 0.66 +1.4 722,032 + CSW01_03545 0.68 +0.5 722,032 + CSW01_03545 0.68 +1.4 722,055 + CSW01_03545 0.70 -3.0 722,072 + CSW01_03545 0.71 +1.0 722,097 + CSW01_03545 0.73 -0.2 722,097 + CSW01_03545 0.73 -0.6 722,132 + CSW01_03545 0.76 -0.6
Or see this region's nucleotide sequence