Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03485

Experiment: ICP3_phage_41.1_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_03480 and CSW01_03485 are separated by 308 nucleotidesCSW01_03485 and CSW01_03490 are separated by 169 nucleotides CSW01_03480: CSW01_03480 - tRNA (adenosine(37)-N6)-methyltransferase TrmM, at 705,690 to 706,412 _03480 CSW01_03485: CSW01_03485 - branched-chain amino acid transport system II carrier protein, at 706,721 to 708,034 _03485 CSW01_03490: CSW01_03490 - peptide chain release factor 2, at 708,204 to 709,302 _03490 Position (kb) 706 707 708 709Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 705.739 kb on + strandat 705.739 kb on + strandat 705.739 kb on + strandat 705.739 kb on + strandat 705.739 kb on + strandat 705.739 kb on + strandat 705.739 kb on + strandat 705.746 kb on - strandat 705.747 kb on - strandat 705.747 kb on - strandat 705.747 kb on - strandat 705.747 kb on - strandat 705.747 kb on - strandat 705.801 kb on - strand, within CSW01_03480at 705.839 kb on - strand, within CSW01_03480at 705.870 kb on + strand, within CSW01_03480at 705.885 kb on + strand, within CSW01_03480at 705.893 kb on - strand, within CSW01_03480at 705.899 kb on + strand, within CSW01_03480at 705.931 kb on - strand, within CSW01_03480at 705.956 kb on + strand, within CSW01_03480at 705.956 kb on + strand, within CSW01_03480at 705.964 kb on - strand, within CSW01_03480at 706.015 kb on + strand, within CSW01_03480at 706.133 kb on + strand, within CSW01_03480at 706.138 kb on + strand, within CSW01_03480at 706.141 kb on - strand, within CSW01_03480at 706.146 kb on - strand, within CSW01_03480at 706.227 kb on - strand, within CSW01_03480at 706.244 kb on - strand, within CSW01_03480at 706.258 kb on - strand, within CSW01_03480at 706.335 kb on - strand, within CSW01_03480at 706.368 kb on - strandat 706.638 kb on + strandat 706.663 kb on + strandat 706.706 kb on + strandat 706.712 kb on + strandat 706.761 kb on + strandat 706.762 kb on - strandat 706.825 kb on + strandat 706.837 kb on + strandat 706.845 kb on - strandat 706.848 kb on - strandat 706.967 kb on + strand, within CSW01_03485at 706.975 kb on - strand, within CSW01_03485at 706.975 kb on - strand, within CSW01_03485at 706.992 kb on - strand, within CSW01_03485at 707.027 kb on + strand, within CSW01_03485at 707.027 kb on + strand, within CSW01_03485at 707.117 kb on + strand, within CSW01_03485at 707.123 kb on + strand, within CSW01_03485at 707.173 kb on + strand, within CSW01_03485at 707.194 kb on - strand, within CSW01_03485at 707.208 kb on - strand, within CSW01_03485at 707.210 kb on + strand, within CSW01_03485at 707.240 kb on - strand, within CSW01_03485at 707.284 kb on - strand, within CSW01_03485at 707.308 kb on - strand, within CSW01_03485at 707.310 kb on - strand, within CSW01_03485at 707.372 kb on + strand, within CSW01_03485at 707.381 kb on - strand, within CSW01_03485at 707.412 kb on + strand, within CSW01_03485at 707.420 kb on - strand, within CSW01_03485at 707.420 kb on - strand, within CSW01_03485at 707.446 kb on + strand, within CSW01_03485at 707.454 kb on - strand, within CSW01_03485at 707.461 kb on + strand, within CSW01_03485at 707.469 kb on - strand, within CSW01_03485at 707.481 kb on + strand, within CSW01_03485at 707.481 kb on + strand, within CSW01_03485at 707.487 kb on - strand, within CSW01_03485at 707.489 kb on - strand, within CSW01_03485at 707.561 kb on - strand, within CSW01_03485at 707.636 kb on - strand, within CSW01_03485at 707.680 kb on + strand, within CSW01_03485at 707.688 kb on - strand, within CSW01_03485at 707.708 kb on - strand, within CSW01_03485at 707.728 kb on + strand, within CSW01_03485at 707.728 kb on + strand, within CSW01_03485at 707.728 kb on + strand, within CSW01_03485at 707.736 kb on - strand, within CSW01_03485at 707.759 kb on + strand, within CSW01_03485at 707.759 kb on + strand, within CSW01_03485at 707.767 kb on - strand, within CSW01_03485at 707.846 kb on - strand, within CSW01_03485at 707.846 kb on - strand, within CSW01_03485at 707.875 kb on - strand, within CSW01_03485at 707.903 kb on - strandat 707.923 kb on + strandat 707.939 kb on + strandat 707.974 kb on + strandat 707.977 kb on - strandat 707.977 kb on - strandat 708.037 kb on - strandat 708.047 kb on - strandat 708.058 kb on - strandat 708.058 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep1
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705,739 + -2.2
705,739 + -0.3
705,739 + +1.3
705,739 + -0.8
705,739 + -4.4
705,739 + -2.7
705,739 + -2.7
705,746 - +1.9
705,747 - +0.6
705,747 - -1.0
705,747 - -0.9
705,747 - -0.8
705,747 - -0.3
705,801 - CSW01_03480 0.15 -0.2
705,839 - CSW01_03480 0.21 +2.5
705,870 + CSW01_03480 0.25 -0.2
705,885 + CSW01_03480 0.27 -0.3
705,893 - CSW01_03480 0.28 +0.2
705,899 + CSW01_03480 0.29 -1.0
705,931 - CSW01_03480 0.33 -0.1
705,956 + CSW01_03480 0.37 +2.2
705,956 + CSW01_03480 0.37 -0.0
705,964 - CSW01_03480 0.38 +0.1
706,015 + CSW01_03480 0.45 +0.9
706,133 + CSW01_03480 0.61 +0.5
706,138 + CSW01_03480 0.62 +0.5
706,141 - CSW01_03480 0.62 -2.4
706,146 - CSW01_03480 0.63 -0.8
706,227 - CSW01_03480 0.74 +2.5
706,244 - CSW01_03480 0.77 -0.6
706,258 - CSW01_03480 0.79 +0.3
706,335 - CSW01_03480 0.89 +0.8
706,368 - -2.4
706,638 + -0.3
706,663 + +0.8
706,706 + -1.1
706,712 + +0.6
706,761 + -2.1
706,762 - +2.1
706,825 + +0.1
706,837 + -0.9
706,845 - -0.0
706,848 - +0.9
706,967 + CSW01_03485 0.19 +0.2
706,975 - CSW01_03485 0.19 +0.7
706,975 - CSW01_03485 0.19 -2.0
706,992 - CSW01_03485 0.21 -0.5
707,027 + CSW01_03485 0.23 +0.3
707,027 + CSW01_03485 0.23 +0.6
707,117 + CSW01_03485 0.30 -1.2
707,123 + CSW01_03485 0.31 +0.1
707,173 + CSW01_03485 0.34 -1.2
707,194 - CSW01_03485 0.36 +0.1
707,208 - CSW01_03485 0.37 -0.3
707,210 + CSW01_03485 0.37 +1.2
707,240 - CSW01_03485 0.39 -2.9
707,284 - CSW01_03485 0.43 +0.6
707,308 - CSW01_03485 0.45 -0.3
707,310 - CSW01_03485 0.45 +1.7
707,372 + CSW01_03485 0.50 +1.7
707,381 - CSW01_03485 0.50 +0.0
707,412 + CSW01_03485 0.53 +1.9
707,420 - CSW01_03485 0.53 +2.0
707,420 - CSW01_03485 0.53 -0.9
707,446 + CSW01_03485 0.55 -3.2
707,454 - CSW01_03485 0.56 +0.2
707,461 + CSW01_03485 0.56 +1.0
707,469 - CSW01_03485 0.57 +1.1
707,481 + CSW01_03485 0.58 -0.4
707,481 + CSW01_03485 0.58 +0.8
707,487 - CSW01_03485 0.58 -0.6
707,489 - CSW01_03485 0.58 -0.5
707,561 - CSW01_03485 0.64 +0.7
707,636 - CSW01_03485 0.70 +1.1
707,680 + CSW01_03485 0.73 -1.2
707,688 - CSW01_03485 0.74 +0.4
707,708 - CSW01_03485 0.75 -1.6
707,728 + CSW01_03485 0.77 +0.3
707,728 + CSW01_03485 0.77 -3.4
707,728 + CSW01_03485 0.77 +0.2
707,736 - CSW01_03485 0.77 +0.1
707,759 + CSW01_03485 0.79 +0.6
707,759 + CSW01_03485 0.79 -0.5
707,767 - CSW01_03485 0.80 +0.1
707,846 - CSW01_03485 0.86 +0.8
707,846 - CSW01_03485 0.86 -2.2
707,875 - CSW01_03485 0.88 +1.5
707,903 - +0.3
707,923 + -2.7
707,939 + -2.0
707,974 + -0.3
707,977 - -1.2
707,977 - -2.7
708,037 - -0.2
708,047 - +1.7
708,058 - +0.8
708,058 - -0.3

Or see this region's nucleotide sequence