Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03460

Experiment: ICP3_phage_41.1_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_03450 and CSW01_03455 are separated by 110 nucleotidesCSW01_03455 and CSW01_03460 overlap by 40 nucleotidesCSW01_03460 and CSW01_03465 overlap by 12 nucleotides CSW01_03445: CSW01_03445 - SCP2 domain-containing protein, at 698,386 to 698,913 _03445 CSW01_03450: CSW01_03450 - N-acetyltransferase, at 698,849 to 699,400 _03450 CSW01_03455: CSW01_03455 - DNA polymerase III subunit psi, at 699,511 to 699,918 _03455 CSW01_03460: CSW01_03460 - ribosomal-protein-alanine N-acetyltransferase, at 699,879 to 700,364 _03460 CSW01_03465: CSW01_03465 - GGDEF-domain containing protein, at 700,353 to 702,410 _03465 Position (kb) 699 700 701Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 699.046 kb on + strand, within CSW01_03450at 699.065 kb on + strand, within CSW01_03450at 699.070 kb on + strand, within CSW01_03450at 699.075 kb on + strand, within CSW01_03450at 699.078 kb on - strand, within CSW01_03450at 699.078 kb on - strand, within CSW01_03450at 699.083 kb on - strand, within CSW01_03450at 699.100 kb on - strand, within CSW01_03450at 699.114 kb on + strand, within CSW01_03450at 699.114 kb on + strand, within CSW01_03450at 699.114 kb on + strand, within CSW01_03450at 699.114 kb on + strand, within CSW01_03450at 699.114 kb on + strand, within CSW01_03450at 699.114 kb on + strand, within CSW01_03450at 699.114 kb on + strand, within CSW01_03450at 699.114 kb on + strand, within CSW01_03450at 699.114 kb on + strand, within CSW01_03450at 699.122 kb on - strand, within CSW01_03450at 699.122 kb on - strand, within CSW01_03450at 699.122 kb on - strand, within CSW01_03450at 699.122 kb on - strand, within CSW01_03450at 699.122 kb on - strand, within CSW01_03450at 699.145 kb on - strand, within CSW01_03450at 699.183 kb on + strand, within CSW01_03450at 699.183 kb on + strand, within CSW01_03450at 699.190 kb on - strand, within CSW01_03450at 699.191 kb on - strand, within CSW01_03450at 699.191 kb on - strand, within CSW01_03450at 699.191 kb on - strand, within CSW01_03450at 699.192 kb on + strand, within CSW01_03450at 699.192 kb on + strand, within CSW01_03450at 699.200 kb on - strand, within CSW01_03450at 699.205 kb on + strand, within CSW01_03450at 699.251 kb on + strand, within CSW01_03450at 699.286 kb on + strand, within CSW01_03450at 699.294 kb on - strand, within CSW01_03450at 699.315 kb on - strand, within CSW01_03450at 699.330 kb on + strand, within CSW01_03450at 699.376 kb on - strandat 699.489 kb on + strandat 699.501 kb on + strandat 699.501 kb on + strandat 699.514 kb on - strandat 699.595 kb on - strand, within CSW01_03455at 699.888 kb on + strandat 699.906 kb on - strandat 699.906 kb on - strandat 699.989 kb on - strand, within CSW01_03460at 700.011 kb on + strand, within CSW01_03460at 700.026 kb on - strand, within CSW01_03460at 700.099 kb on - strand, within CSW01_03460at 700.153 kb on - strand, within CSW01_03460at 700.159 kb on - strand, within CSW01_03460at 700.160 kb on - strand, within CSW01_03460at 700.193 kb on - strand, within CSW01_03460at 700.219 kb on + strand, within CSW01_03460at 700.227 kb on - strand, within CSW01_03460at 700.227 kb on - strand, within CSW01_03460at 700.227 kb on - strand, within CSW01_03460at 700.259 kb on + strand, within CSW01_03460at 700.259 kb on + strand, within CSW01_03460at 700.259 kb on + strand, within CSW01_03460at 700.267 kb on - strand, within CSW01_03460at 700.267 kb on - strand, within CSW01_03460at 700.299 kb on + strand, within CSW01_03460at 700.301 kb on + strand, within CSW01_03460at 700.301 kb on + strand, within CSW01_03460at 700.309 kb on - strand, within CSW01_03460at 700.309 kb on - strand, within CSW01_03460at 700.309 kb on - strand, within CSW01_03460at 700.319 kb on + strandat 700.319 kb on + strandat 700.327 kb on - strandat 700.340 kb on + strandat 700.470 kb on + strandat 700.505 kb on + strandat 700.505 kb on + strandat 700.505 kb on + strandat 700.505 kb on + strandat 700.505 kb on + strandat 700.513 kb on - strandat 700.513 kb on - strandat 700.513 kb on - strandat 700.513 kb on - strandat 700.515 kb on + strandat 700.517 kb on + strandat 700.571 kb on - strand, within CSW01_03465at 700.663 kb on + strand, within CSW01_03465at 700.663 kb on + strand, within CSW01_03465at 700.676 kb on - strand, within CSW01_03465at 700.677 kb on + strand, within CSW01_03465at 700.678 kb on + strand, within CSW01_03465at 700.685 kb on - strand, within CSW01_03465at 700.686 kb on - strand, within CSW01_03465at 700.687 kb on + strand, within CSW01_03465at 700.695 kb on - strand, within CSW01_03465at 700.695 kb on - strand, within CSW01_03465at 700.762 kb on - strand, within CSW01_03465at 700.776 kb on + strand, within CSW01_03465at 700.784 kb on - strand, within CSW01_03465at 700.842 kb on - strand, within CSW01_03465at 700.847 kb on + strand, within CSW01_03465at 700.879 kb on - strand, within CSW01_03465at 700.879 kb on - strand, within CSW01_03465at 700.879 kb on - strand, within CSW01_03465at 701.108 kb on - strand, within CSW01_03465at 701.108 kb on - strand, within CSW01_03465at 701.148 kb on + strand, within CSW01_03465at 701.239 kb on + strand, within CSW01_03465at 701.247 kb on - strand, within CSW01_03465at 701.252 kb on - strand, within CSW01_03465at 701.258 kb on - strand, within CSW01_03465at 701.329 kb on + strand, within CSW01_03465at 701.337 kb on - strand, within CSW01_03465at 701.361 kb on - strand, within CSW01_03465

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep1
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699,046 + CSW01_03450 0.36 +0.2
699,065 + CSW01_03450 0.39 +0.2
699,070 + CSW01_03450 0.40 +0.7
699,075 + CSW01_03450 0.41 -1.0
699,078 - CSW01_03450 0.41 -2.3
699,078 - CSW01_03450 0.41 -0.5
699,083 - CSW01_03450 0.42 -1.4
699,100 - CSW01_03450 0.45 -0.4
699,114 + CSW01_03450 0.48 +0.3
699,114 + CSW01_03450 0.48 -0.1
699,114 + CSW01_03450 0.48 +0.9
699,114 + CSW01_03450 0.48 -0.1
699,114 + CSW01_03450 0.48 -0.2
699,114 + CSW01_03450 0.48 -1.9
699,114 + CSW01_03450 0.48 +0.0
699,114 + CSW01_03450 0.48 -2.1
699,114 + CSW01_03450 0.48 -2.3
699,122 - CSW01_03450 0.49 -3.4
699,122 - CSW01_03450 0.49 -1.1
699,122 - CSW01_03450 0.49 +0.8
699,122 - CSW01_03450 0.49 +0.3
699,122 - CSW01_03450 0.49 +2.0
699,145 - CSW01_03450 0.54 +0.3
699,183 + CSW01_03450 0.61 +1.4
699,183 + CSW01_03450 0.61 +1.4
699,190 - CSW01_03450 0.62 -1.2
699,191 - CSW01_03450 0.62 -1.4
699,191 - CSW01_03450 0.62 -2.5
699,191 - CSW01_03450 0.62 +1.0
699,192 + CSW01_03450 0.62 +2.0
699,192 + CSW01_03450 0.62 -1.8
699,200 - CSW01_03450 0.64 +0.7
699,205 + CSW01_03450 0.64 +1.6
699,251 + CSW01_03450 0.73 +1.5
699,286 + CSW01_03450 0.79 +2.1
699,294 - CSW01_03450 0.81 +0.3
699,315 - CSW01_03450 0.84 -0.6
699,330 + CSW01_03450 0.87 +0.9
699,376 - -1.2
699,489 + +0.4
699,501 + +0.1
699,501 + +0.5
699,514 - -3.4
699,595 - CSW01_03455 0.21 -2.0
699,888 + -0.8
699,906 - +0.3
699,906 - -1.6
699,989 - CSW01_03460 0.23 -2.3
700,011 + CSW01_03460 0.27 -0.3
700,026 - CSW01_03460 0.30 -1.4
700,099 - CSW01_03460 0.45 -3.3
700,153 - CSW01_03460 0.56 -1.8
700,159 - CSW01_03460 0.58 -0.7
700,160 - CSW01_03460 0.58 -2.6
700,193 - CSW01_03460 0.65 -0.2
700,219 + CSW01_03460 0.70 -3.9
700,227 - CSW01_03460 0.72 -2.9
700,227 - CSW01_03460 0.72 -2.1
700,227 - CSW01_03460 0.72 +1.0
700,259 + CSW01_03460 0.78 +0.5
700,259 + CSW01_03460 0.78 -1.0
700,259 + CSW01_03460 0.78 -3.5
700,267 - CSW01_03460 0.80 +0.9
700,267 - CSW01_03460 0.80 -0.7
700,299 + CSW01_03460 0.86 -0.7
700,301 + CSW01_03460 0.87 -2.4
700,301 + CSW01_03460 0.87 +0.1
700,309 - CSW01_03460 0.88 +0.5
700,309 - CSW01_03460 0.88 -3.1
700,309 - CSW01_03460 0.88 -0.1
700,319 + -0.2
700,319 + -0.5
700,327 - +0.8
700,340 + -4.2
700,470 + +0.1
700,505 + +0.3
700,505 + +0.8
700,505 + +0.9
700,505 + +0.1
700,505 + +0.0
700,513 - -3.7
700,513 - -3.3
700,513 - -0.4
700,513 - -2.2
700,515 + -0.0
700,517 + +2.9
700,571 - CSW01_03465 0.11 -1.9
700,663 + CSW01_03465 0.15 +1.1
700,663 + CSW01_03465 0.15 -2.8
700,676 - CSW01_03465 0.16 -2.0
700,677 + CSW01_03465 0.16 -0.3
700,678 + CSW01_03465 0.16 +0.5
700,685 - CSW01_03465 0.16 +1.1
700,686 - CSW01_03465 0.16 +2.2
700,687 + CSW01_03465 0.16 +2.2
700,695 - CSW01_03465 0.17 -2.8
700,695 - CSW01_03465 0.17 -3.0
700,762 - CSW01_03465 0.20 -0.5
700,776 + CSW01_03465 0.21 +0.7
700,784 - CSW01_03465 0.21 +1.4
700,842 - CSW01_03465 0.24 -1.4
700,847 + CSW01_03465 0.24 +1.0
700,879 - CSW01_03465 0.26 +0.3
700,879 - CSW01_03465 0.26 +1.1
700,879 - CSW01_03465 0.26 -0.3
701,108 - CSW01_03465 0.37 +0.1
701,108 - CSW01_03465 0.37 -3.3
701,148 + CSW01_03465 0.39 -3.0
701,239 + CSW01_03465 0.43 -0.4
701,247 - CSW01_03465 0.43 +0.4
701,252 - CSW01_03465 0.44 +0.8
701,258 - CSW01_03465 0.44 -4.0
701,329 + CSW01_03465 0.47 +1.9
701,337 - CSW01_03465 0.48 -1.9
701,361 - CSW01_03465 0.49 -5.0

Or see this region's nucleotide sequence