Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03285

Experiment: ICP3_phage_41.1_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_03280 and CSW01_03285 are separated by 72 nucleotidesCSW01_03285 and CSW01_03290 are separated by 253 nucleotides CSW01_03280: CSW01_03280 - 16S rRNA methyltransferase, at 660,575 to 661,597 _03280 CSW01_03285: CSW01_03285 - AI-2E family transporter, at 661,670 to 662,755 _03285 CSW01_03290: CSW01_03290 - glutamate-1-semialdehyde 2,1-aminomutase, at 663,009 to 664,307 _03290 Position (kb) 661 662 663Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 660.712 kb on + strand, within CSW01_03280at 660.790 kb on + strand, within CSW01_03280at 660.842 kb on - strand, within CSW01_03280at 660.897 kb on + strand, within CSW01_03280at 660.953 kb on + strand, within CSW01_03280at 660.953 kb on + strand, within CSW01_03280at 660.961 kb on - strand, within CSW01_03280at 660.961 kb on - strand, within CSW01_03280at 660.961 kb on - strand, within CSW01_03280at 660.961 kb on - strand, within CSW01_03280at 661.011 kb on + strand, within CSW01_03280at 661.012 kb on - strand, within CSW01_03280at 661.249 kb on - strand, within CSW01_03280at 661.254 kb on - strand, within CSW01_03280at 661.287 kb on + strand, within CSW01_03280at 661.287 kb on + strand, within CSW01_03280at 661.358 kb on + strand, within CSW01_03280at 661.388 kb on - strand, within CSW01_03280at 661.403 kb on - strand, within CSW01_03280at 661.430 kb on - strand, within CSW01_03280at 661.448 kb on - strand, within CSW01_03280at 661.579 kb on + strandat 661.584 kb on + strandat 661.584 kb on + strandat 661.584 kb on + strandat 661.584 kb on + strandat 661.584 kb on + strandat 661.584 kb on + strandat 661.587 kb on - strandat 661.587 kb on - strandat 661.592 kb on - strandat 661.592 kb on - strandat 661.592 kb on - strandat 661.592 kb on - strandat 661.616 kb on - strandat 661.727 kb on - strandat 661.786 kb on + strand, within CSW01_03285at 661.802 kb on - strand, within CSW01_03285at 661.831 kb on + strand, within CSW01_03285at 661.832 kb on - strand, within CSW01_03285at 661.839 kb on - strand, within CSW01_03285at 661.839 kb on - strand, within CSW01_03285at 661.841 kb on + strand, within CSW01_03285at 661.844 kb on - strand, within CSW01_03285at 661.849 kb on - strand, within CSW01_03285at 661.883 kb on - strand, within CSW01_03285at 661.961 kb on + strand, within CSW01_03285at 661.985 kb on - strand, within CSW01_03285at 662.019 kb on + strand, within CSW01_03285at 662.019 kb on + strand, within CSW01_03285at 662.066 kb on + strand, within CSW01_03285at 662.067 kb on + strand, within CSW01_03285at 662.120 kb on - strand, within CSW01_03285at 662.168 kb on + strand, within CSW01_03285at 662.171 kb on - strand, within CSW01_03285at 662.176 kb on - strand, within CSW01_03285at 662.217 kb on + strand, within CSW01_03285at 662.225 kb on - strand, within CSW01_03285at 662.225 kb on - strand, within CSW01_03285at 662.355 kb on + strand, within CSW01_03285at 662.363 kb on - strand, within CSW01_03285at 662.393 kb on + strand, within CSW01_03285at 662.393 kb on + strand, within CSW01_03285at 662.418 kb on - strand, within CSW01_03285at 662.420 kb on + strand, within CSW01_03285at 662.420 kb on + strand, within CSW01_03285at 662.454 kb on - strand, within CSW01_03285at 662.477 kb on + strand, within CSW01_03285at 662.484 kb on - strand, within CSW01_03285at 662.618 kb on + strand, within CSW01_03285at 662.633 kb on + strand, within CSW01_03285at 662.893 kb on + strandat 662.900 kb on + strandat 662.901 kb on - strandat 662.913 kb on - strandat 662.955 kb on - strandat 662.955 kb on - strandat 662.955 kb on - strandat 662.955 kb on - strandat 662.991 kb on + strandat 663.014 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep1
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660,712 + CSW01_03280 0.13 +1.0
660,790 + CSW01_03280 0.21 -2.1
660,842 - CSW01_03280 0.26 +0.6
660,897 + CSW01_03280 0.31 -3.9
660,953 + CSW01_03280 0.37 -3.9
660,953 + CSW01_03280 0.37 -2.1
660,961 - CSW01_03280 0.38 +0.3
660,961 - CSW01_03280 0.38 -3.0
660,961 - CSW01_03280 0.38 +0.6
660,961 - CSW01_03280 0.38 +0.3
661,011 + CSW01_03280 0.43 -0.8
661,012 - CSW01_03280 0.43 -2.1
661,249 - CSW01_03280 0.66 +1.2
661,254 - CSW01_03280 0.66 -0.2
661,287 + CSW01_03280 0.70 -1.9
661,287 + CSW01_03280 0.70 -0.1
661,358 + CSW01_03280 0.77 -2.8
661,388 - CSW01_03280 0.79 +0.0
661,403 - CSW01_03280 0.81 +1.0
661,430 - CSW01_03280 0.84 +1.2
661,448 - CSW01_03280 0.85 -1.0
661,579 + +0.6
661,584 + +0.3
661,584 + -0.0
661,584 + -2.9
661,584 + +0.2
661,584 + -2.1
661,584 + +0.9
661,587 - +0.1
661,587 - -0.5
661,592 - +0.8
661,592 - +1.7
661,592 - +0.5
661,592 - +0.9
661,616 - +1.3
661,727 - -0.8
661,786 + CSW01_03285 0.11 -1.8
661,802 - CSW01_03285 0.12 -4.1
661,831 + CSW01_03285 0.15 -0.1
661,832 - CSW01_03285 0.15 -1.4
661,839 - CSW01_03285 0.16 +0.3
661,839 - CSW01_03285 0.16 -0.2
661,841 + CSW01_03285 0.16 +2.1
661,844 - CSW01_03285 0.16 +0.1
661,849 - CSW01_03285 0.16 +0.5
661,883 - CSW01_03285 0.20 -3.7
661,961 + CSW01_03285 0.27 +0.6
661,985 - CSW01_03285 0.29 +0.4
662,019 + CSW01_03285 0.32 +0.6
662,019 + CSW01_03285 0.32 +1.3
662,066 + CSW01_03285 0.36 -0.4
662,067 + CSW01_03285 0.37 -2.3
662,120 - CSW01_03285 0.41 +0.5
662,168 + CSW01_03285 0.46 +1.5
662,171 - CSW01_03285 0.46 -1.8
662,176 - CSW01_03285 0.47 -1.1
662,217 + CSW01_03285 0.50 +2.0
662,225 - CSW01_03285 0.51 +0.7
662,225 - CSW01_03285 0.51 -0.2
662,355 + CSW01_03285 0.63 +0.9
662,363 - CSW01_03285 0.64 -0.5
662,393 + CSW01_03285 0.67 -0.6
662,393 + CSW01_03285 0.67 -0.2
662,418 - CSW01_03285 0.69 -1.9
662,420 + CSW01_03285 0.69 +1.1
662,420 + CSW01_03285 0.69 -0.9
662,454 - CSW01_03285 0.72 -2.5
662,477 + CSW01_03285 0.74 -0.2
662,484 - CSW01_03285 0.75 -0.4
662,618 + CSW01_03285 0.87 -2.7
662,633 + CSW01_03285 0.89 -0.4
662,893 + -0.4
662,900 + +0.7
662,901 - -0.8
662,913 - -2.0
662,955 - -0.0
662,955 - +0.6
662,955 - +1.9
662,955 - +0.4
662,991 + -0.3
663,014 - -1.1

Or see this region's nucleotide sequence