Experiment: ICP3_phage_41.1_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_02890 and CSW01_02895 are separated by 91 nucleotides CSW01_02895 and CSW01_02900 are separated by 181 nucleotides CSW01_02900 and CSW01_02905 are separated by 33 nucleotides CSW01_02905 and CSW01_02910 are separated by 22 nucleotides CSW01_02910 and CSW01_02915 are separated by 66 nucleotides CSW01_02915 and CSW01_02920 are separated by 55 nucleotides CSW01_02920 and CSW01_02925 are separated by 72 nucleotides CSW01_02925 and CSW01_02930 are separated by 56 nucleotides
CSW01_02890: CSW01_02890 - aspartate kinase, at 578,051 to 579,238
_02890
CSW01_02895: CSW01_02895 - carbon storage regulator, at 579,330 to 579,527
_02895
CSW01_02900: CSW01_02900 - tRNA-Ser, at 579,709 to 579,801
_02900
CSW01_02905: CSW01_02905 - tRNA-Arg, at 579,835 to 579,911
_02905
CSW01_02910: CSW01_02910 - tRNA-Ser, at 579,934 to 580,026
_02910
CSW01_02915: CSW01_02915 - tRNA-Arg, at 580,093 to 580,169
_02915
CSW01_02920: CSW01_02920 - tRNA-Arg, at 580,225 to 580,301
_02920
CSW01_02925: CSW01_02925 - tRNA-Arg, at 580,374 to 580,450
_02925
CSW01_02930: CSW01_02930 - tRNA-Arg, at 580,507 to 580,583
_02930
Position (kb) 579
580 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 578.495 kb on + strand, within CSW01_02890 at 578.495 kb on + strand, within CSW01_02890 at 578.503 kb on - strand, within CSW01_02890 at 578.518 kb on + strand, within CSW01_02890 at 578.518 kb on + strand, within CSW01_02890 at 578.518 kb on + strand, within CSW01_02890 at 578.528 kb on + strand, within CSW01_02890 at 578.551 kb on - strand, within CSW01_02890 at 578.586 kb on + strand, within CSW01_02890 at 578.594 kb on - strand, within CSW01_02890 at 578.595 kb on + strand, within CSW01_02890 at 578.595 kb on - strand, within CSW01_02890 at 578.603 kb on - strand, within CSW01_02890 at 578.619 kb on + strand, within CSW01_02890 at 578.630 kb on - strand, within CSW01_02890 at 578.684 kb on + strand, within CSW01_02890 at 578.684 kb on + strand, within CSW01_02890 at 578.692 kb on + strand, within CSW01_02890 at 578.719 kb on - strand, within CSW01_02890 at 578.719 kb on - strand, within CSW01_02890 at 578.726 kb on + strand, within CSW01_02890 at 578.809 kb on - strand, within CSW01_02890 at 578.868 kb on + strand, within CSW01_02890 at 578.892 kb on + strand, within CSW01_02890 at 578.892 kb on + strand, within CSW01_02890 at 578.892 kb on + strand, within CSW01_02890 at 578.892 kb on + strand, within CSW01_02890 at 578.900 kb on - strand, within CSW01_02890 at 578.900 kb on - strand, within CSW01_02890 at 578.900 kb on - strand, within CSW01_02890 at 578.900 kb on - strand, within CSW01_02890 at 578.918 kb on - strand, within CSW01_02890 at 578.918 kb on - strand, within CSW01_02890 at 578.954 kb on - strand, within CSW01_02890 at 579.062 kb on + strand, within CSW01_02890 at 579.062 kb on + strand, within CSW01_02890 at 579.062 kb on + strand, within CSW01_02890 at 579.062 kb on + strand, within CSW01_02890 at 579.062 kb on + strand, within CSW01_02890 at 579.062 kb on + strand, within CSW01_02890 at 579.062 kb on + strand, within CSW01_02890 at 579.062 kb on + strand, within CSW01_02890 at 579.070 kb on - strand, within CSW01_02890 at 579.070 kb on - strand, within CSW01_02890 at 579.070 kb on - strand, within CSW01_02890 at 579.070 kb on - strand, within CSW01_02890 at 579.070 kb on - strand, within CSW01_02890 at 579.139 kb on - strand at 579.140 kb on - strand at 579.141 kb on - strand at 579.177 kb on + strand at 579.185 kb on - strand at 579.246 kb on + strand at 579.313 kb on + strand at 579.503 kb on - strand, within CSW01_02895 at 580.311 kb on + strand at 580.324 kb on + strand at 580.324 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep1 remove 578,495 + CSW01_02890 0.37 +3.5 578,495 + CSW01_02890 0.37 -0.6 578,503 - CSW01_02890 0.38 -0.6 578,518 + CSW01_02890 0.39 -3.3 578,518 + CSW01_02890 0.39 -0.5 578,518 + CSW01_02890 0.39 +0.7 578,528 + CSW01_02890 0.40 -2.3 578,551 - CSW01_02890 0.42 -1.5 578,586 + CSW01_02890 0.45 +1.3 578,594 - CSW01_02890 0.46 -1.5 578,595 + CSW01_02890 0.46 -0.8 578,595 - CSW01_02890 0.46 -2.5 578,603 - CSW01_02890 0.46 -0.0 578,619 + CSW01_02890 0.48 -1.9 578,630 - CSW01_02890 0.49 -1.0 578,684 + CSW01_02890 0.53 -2.7 578,684 + CSW01_02890 0.53 -2.8 578,692 + CSW01_02890 0.54 -2.5 578,719 - CSW01_02890 0.56 +1.7 578,719 - CSW01_02890 0.56 -2.0 578,726 + CSW01_02890 0.57 -3.5 578,809 - CSW01_02890 0.64 -1.1 578,868 + CSW01_02890 0.69 -0.3 578,892 + CSW01_02890 0.71 -1.8 578,892 + CSW01_02890 0.71 -1.6 578,892 + CSW01_02890 0.71 -4.2 578,892 + CSW01_02890 0.71 +1.3 578,900 - CSW01_02890 0.71 -1.8 578,900 - CSW01_02890 0.71 -1.5 578,900 - CSW01_02890 0.71 +1.0 578,900 - CSW01_02890 0.71 -2.3 578,918 - CSW01_02890 0.73 -2.2 578,918 - CSW01_02890 0.73 -3.4 578,954 - CSW01_02890 0.76 -1.9 579,062 + CSW01_02890 0.85 -0.5 579,062 + CSW01_02890 0.85 +1.3 579,062 + CSW01_02890 0.85 -2.0 579,062 + CSW01_02890 0.85 -1.1 579,062 + CSW01_02890 0.85 -2.5 579,062 + CSW01_02890 0.85 -3.2 579,062 + CSW01_02890 0.85 -1.8 579,062 + CSW01_02890 0.85 -3.9 579,070 - CSW01_02890 0.86 -1.4 579,070 - CSW01_02890 0.86 +0.5 579,070 - CSW01_02890 0.86 -0.1 579,070 - CSW01_02890 0.86 +0.8 579,070 - CSW01_02890 0.86 -1.8 579,139 - -4.5 579,140 - -2.0 579,141 - -4.0 579,177 + -0.5 579,185 - -3.1 579,246 + +1.6 579,313 + -1.8 579,503 - CSW01_02895 0.87 -2.2 580,311 + -4.6 580,324 + +1.1 580,324 + -1.5
Or see this region's nucleotide sequence