Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02655

Experiment: ICP3_phage_41.1_MOI_rep1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_02650 and CSW01_02655 are separated by 388 nucleotidesCSW01_02655 and CSW01_02660 are separated by 273 nucleotidesCSW01_02660 and CSW01_02665 are separated by 176 nucleotides CSW01_02650: CSW01_02650 - IS5/IS1182 family transposase, at 531,639 to 532,549 _02650 CSW01_02655: CSW01_02655 - type II secretion system protein, at 532,938 to 533,462 _02655 CSW01_02660: CSW01_02660 - high-affinity zinc uptake system protein ZnuA precursor, at 533,736 to 533,981 _02660 CSW01_02665: CSW01_02665 - peptidase M23, at 534,158 to 535,438 _02665 Position (kb) 532 533 534Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 532.037 kb on + strand, within CSW01_02650at 532.037 kb on + strand, within CSW01_02650at 532.063 kb on - strand, within CSW01_02650at 532.095 kb on + strand, within CSW01_02650at 532.100 kb on + strand, within CSW01_02650at 532.134 kb on + strand, within CSW01_02650at 532.179 kb on - strand, within CSW01_02650at 532.184 kb on + strand, within CSW01_02650at 532.205 kb on - strand, within CSW01_02650at 532.212 kb on - strand, within CSW01_02650at 532.220 kb on - strand, within CSW01_02650at 532.269 kb on + strand, within CSW01_02650at 532.271 kb on + strand, within CSW01_02650at 532.271 kb on + strand, within CSW01_02650at 532.279 kb on - strand, within CSW01_02650at 532.279 kb on - strand, within CSW01_02650at 532.284 kb on - strand, within CSW01_02650at 532.303 kb on - strand, within CSW01_02650at 532.321 kb on + strand, within CSW01_02650at 532.321 kb on + strand, within CSW01_02650at 532.321 kb on + strand, within CSW01_02650at 532.321 kb on + strand, within CSW01_02650at 532.328 kb on + strand, within CSW01_02650at 532.357 kb on + strand, within CSW01_02650at 532.383 kb on - strand, within CSW01_02650at 532.385 kb on - strand, within CSW01_02650at 532.455 kb on - strand, within CSW01_02650at 532.521 kb on - strandat 532.551 kb on + strandat 532.552 kb on + strandat 532.559 kb on + strandat 532.559 kb on + strandat 532.625 kb on + strandat 532.633 kb on - strandat 532.641 kb on + strandat 532.746 kb on + strandat 532.748 kb on - strandat 532.761 kb on + strandat 532.769 kb on + strandat 532.769 kb on + strandat 532.777 kb on - strandat 532.777 kb on - strandat 532.777 kb on - strandat 532.918 kb on + strandat 532.970 kb on - strandat 533.109 kb on - strand, within CSW01_02655at 533.143 kb on + strand, within CSW01_02655at 533.162 kb on - strand, within CSW01_02655at 533.163 kb on - strand, within CSW01_02655at 533.163 kb on - strand, within CSW01_02655at 533.248 kb on + strand, within CSW01_02655at 533.255 kb on - strand, within CSW01_02655at 533.256 kb on - strand, within CSW01_02655at 533.292 kb on + strand, within CSW01_02655at 533.292 kb on + strand, within CSW01_02655at 533.292 kb on + strand, within CSW01_02655at 533.292 kb on + strand, within CSW01_02655at 533.292 kb on + strand, within CSW01_02655at 533.300 kb on - strand, within CSW01_02655at 533.300 kb on - strand, within CSW01_02655at 533.300 kb on - strand, within CSW01_02655at 533.300 kb on - strand, within CSW01_02655at 533.300 kb on - strand, within CSW01_02655at 533.300 kb on - strand, within CSW01_02655at 533.300 kb on - strand, within CSW01_02655at 533.300 kb on - strand, within CSW01_02655at 533.300 kb on - strand, within CSW01_02655at 533.329 kb on + strand, within CSW01_02655at 533.329 kb on + strand, within CSW01_02655at 533.337 kb on - strand, within CSW01_02655at 533.341 kb on + strand, within CSW01_02655at 533.350 kb on + strand, within CSW01_02655at 533.389 kb on - strand, within CSW01_02655at 533.415 kb on - strandat 533.430 kb on - strandat 533.446 kb on - strandat 533.507 kb on + strandat 533.515 kb on - strandat 533.538 kb on - strandat 533.654 kb on - strandat 533.679 kb on + strandat 533.689 kb on + strandat 533.697 kb on - strandat 533.697 kb on - strandat 533.723 kb on - strandat 533.750 kb on - strandat 533.891 kb on + strand, within CSW01_02660at 533.896 kb on + strand, within CSW01_02660at 533.896 kb on + strand, within CSW01_02660at 533.904 kb on - strand, within CSW01_02660at 533.904 kb on - strand, within CSW01_02660at 533.904 kb on - strand, within CSW01_02660at 533.911 kb on + strand, within CSW01_02660at 533.911 kb on + strand, within CSW01_02660at 533.911 kb on + strand, within CSW01_02660at 533.911 kb on + strand, within CSW01_02660at 533.911 kb on + strand, within CSW01_02660at 533.911 kb on + strand, within CSW01_02660at 533.919 kb on - strand, within CSW01_02660at 533.919 kb on - strand, within CSW01_02660at 533.919 kb on - strand, within CSW01_02660at 533.919 kb on - strand, within CSW01_02660at 533.919 kb on - strand, within CSW01_02660at 533.919 kb on - strand, within CSW01_02660at 533.919 kb on - strand, within CSW01_02660at 533.919 kb on - strand, within CSW01_02660at 533.945 kb on + strand, within CSW01_02660at 533.989 kb on + strandat 534.006 kb on - strandat 534.028 kb on - strandat 534.055 kb on - strandat 534.062 kb on + strandat 534.062 kb on + strandat 534.089 kb on - strandat 534.268 kb on - strandat 534.268 kb on - strandat 534.300 kb on + strand, within CSW01_02665at 534.349 kb on - strand, within CSW01_02665at 534.417 kb on - strand, within CSW01_02665at 534.418 kb on - strand, within CSW01_02665

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep1
remove
532,037 + CSW01_02650 0.44 -3.9
532,037 + CSW01_02650 0.44 +1.5
532,063 - CSW01_02650 0.47 -3.1
532,095 + CSW01_02650 0.50 -2.4
532,100 + CSW01_02650 0.51 -2.4
532,134 + CSW01_02650 0.54 +0.4
532,179 - CSW01_02650 0.59 -0.1
532,184 + CSW01_02650 0.60 +0.2
532,205 - CSW01_02650 0.62 +2.5
532,212 - CSW01_02650 0.63 -0.6
532,220 - CSW01_02650 0.64 +0.6
532,269 + CSW01_02650 0.69 +0.8
532,271 + CSW01_02650 0.69 -0.1
532,271 + CSW01_02650 0.69 -0.0
532,279 - CSW01_02650 0.70 -2.2
532,279 - CSW01_02650 0.70 +2.1
532,284 - CSW01_02650 0.71 +0.8
532,303 - CSW01_02650 0.73 +0.5
532,321 + CSW01_02650 0.75 +0.7
532,321 + CSW01_02650 0.75 -0.9
532,321 + CSW01_02650 0.75 +2.2
532,321 + CSW01_02650 0.75 +1.5
532,328 + CSW01_02650 0.76 -1.1
532,357 + CSW01_02650 0.79 -2.8
532,383 - CSW01_02650 0.82 -3.3
532,385 - CSW01_02650 0.82 -1.2
532,455 - CSW01_02650 0.90 +1.5
532,521 - -3.2
532,551 + +0.3
532,552 + +0.7
532,559 + -2.5
532,559 + -3.1
532,625 + -0.3
532,633 - -1.1
532,641 + +1.3
532,746 + -0.1
532,748 - -0.1
532,761 + -2.5
532,769 + +0.5
532,769 + +0.5
532,777 - +1.3
532,777 - +0.5
532,777 - +1.0
532,918 + -0.2
532,970 - +0.3
533,109 - CSW01_02655 0.33 -3.5
533,143 + CSW01_02655 0.39 +0.2
533,162 - CSW01_02655 0.43 -0.8
533,163 - CSW01_02655 0.43 +0.1
533,163 - CSW01_02655 0.43 -3.1
533,248 + CSW01_02655 0.59 -2.6
533,255 - CSW01_02655 0.60 -1.0
533,256 - CSW01_02655 0.61 +1.1
533,292 + CSW01_02655 0.67 -2.4
533,292 + CSW01_02655 0.67 -1.7
533,292 + CSW01_02655 0.67 -0.2
533,292 + CSW01_02655 0.67 -1.8
533,292 + CSW01_02655 0.67 +0.2
533,300 - CSW01_02655 0.69 -1.5
533,300 - CSW01_02655 0.69 -1.6
533,300 - CSW01_02655 0.69 +0.5
533,300 - CSW01_02655 0.69 -1.9
533,300 - CSW01_02655 0.69 +0.9
533,300 - CSW01_02655 0.69 -2.9
533,300 - CSW01_02655 0.69 +1.6
533,300 - CSW01_02655 0.69 -0.0
533,300 - CSW01_02655 0.69 +0.6
533,329 + CSW01_02655 0.74 +2.3
533,329 + CSW01_02655 0.74 -1.6
533,337 - CSW01_02655 0.76 +1.2
533,341 + CSW01_02655 0.77 -1.3
533,350 + CSW01_02655 0.78 -1.0
533,389 - CSW01_02655 0.86 -0.5
533,415 - -3.9
533,430 - -3.8
533,446 - -0.1
533,507 + +1.2
533,515 - +1.4
533,538 - -0.1
533,654 - -3.1
533,679 + -1.1
533,689 + -3.6
533,697 - -0.2
533,697 - +1.0
533,723 - -1.0
533,750 - +1.1
533,891 + CSW01_02660 0.63 +1.1
533,896 + CSW01_02660 0.65 -3.2
533,896 + CSW01_02660 0.65 -2.9
533,904 - CSW01_02660 0.68 -0.3
533,904 - CSW01_02660 0.68 +0.1
533,904 - CSW01_02660 0.68 -4.1
533,911 + CSW01_02660 0.71 -0.1
533,911 + CSW01_02660 0.71 -1.6
533,911 + CSW01_02660 0.71 -1.3
533,911 + CSW01_02660 0.71 +0.1
533,911 + CSW01_02660 0.71 -1.1
533,911 + CSW01_02660 0.71 -0.6
533,919 - CSW01_02660 0.74 -0.8
533,919 - CSW01_02660 0.74 +0.7
533,919 - CSW01_02660 0.74 +0.4
533,919 - CSW01_02660 0.74 +1.3
533,919 - CSW01_02660 0.74 -2.1
533,919 - CSW01_02660 0.74 -0.4
533,919 - CSW01_02660 0.74 +0.0
533,919 - CSW01_02660 0.74 -2.0
533,945 + CSW01_02660 0.85 -2.9
533,989 + -0.6
534,006 - +0.1
534,028 - +1.7
534,055 - -1.6
534,062 + -0.8
534,062 + +1.2
534,089 - -0.4
534,268 - -3.4
534,268 - -1.6
534,300 + CSW01_02665 0.11 -0.6
534,349 - CSW01_02665 0.15 +1.1
534,417 - CSW01_02665 0.20 -4.1
534,418 - CSW01_02665 0.20 -0.1

Or see this region's nucleotide sequence