Experiment: ICP3_phage_41.1_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_02530 and CSW01_02535 are separated by 148 nucleotides CSW01_02535 and CSW01_02540 are separated by 155 nucleotides
CSW01_02530: CSW01_02530 - D-erythrose-4-phosphate dehydrogenase, at 505,652 to 506,677
_02530
CSW01_02535: CSW01_02535 - phosphoglycerate kinase, at 506,826 to 507,989
_02535
CSW01_02540: CSW01_02540 - class II fructose-bisphosphate aldolase, at 508,145 to 509,221
_02540
Position (kb) 506
507
508 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 505.849 kb on + strand, within CSW01_02530 at 505.957 kb on - strand, within CSW01_02530 at 505.959 kb on + strand, within CSW01_02530 at 505.959 kb on + strand, within CSW01_02530 at 505.962 kb on - strand, within CSW01_02530 at 505.964 kb on + strand, within CSW01_02530 at 505.967 kb on - strand, within CSW01_02530 at 505.972 kb on - strand, within CSW01_02530 at 505.975 kb on - strand, within CSW01_02530 at 505.997 kb on - strand, within CSW01_02530 at 506.089 kb on + strand, within CSW01_02530 at 506.097 kb on - strand, within CSW01_02530 at 506.101 kb on + strand, within CSW01_02530 at 506.139 kb on + strand, within CSW01_02530 at 506.159 kb on + strand, within CSW01_02530 at 506.167 kb on - strand, within CSW01_02530 at 506.399 kb on + strand, within CSW01_02530 at 506.483 kb on - strand, within CSW01_02530 at 506.491 kb on + strand, within CSW01_02530 at 506.507 kb on + strand, within CSW01_02530 at 506.534 kb on + strand, within CSW01_02530 at 506.534 kb on + strand, within CSW01_02530 at 506.602 kb on + strand at 506.602 kb on + strand at 506.665 kb on + strand at 507.965 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep1 remove 505,849 + CSW01_02530 0.19 -2.3 505,957 - CSW01_02530 0.30 -2.0 505,959 + CSW01_02530 0.30 -2.1 505,959 + CSW01_02530 0.30 -2.7 505,962 - CSW01_02530 0.30 +1.3 505,964 + CSW01_02530 0.30 -0.8 505,967 - CSW01_02530 0.31 +0.4 505,972 - CSW01_02530 0.31 -3.4 505,975 - CSW01_02530 0.31 +0.0 505,997 - CSW01_02530 0.34 -3.1 506,089 + CSW01_02530 0.43 -0.6 506,097 - CSW01_02530 0.43 +1.3 506,101 + CSW01_02530 0.44 -2.9 506,139 + CSW01_02530 0.47 -2.3 506,159 + CSW01_02530 0.49 -1.6 506,167 - CSW01_02530 0.50 -1.5 506,399 + CSW01_02530 0.73 -3.1 506,483 - CSW01_02530 0.81 -0.4 506,491 + CSW01_02530 0.82 -1.1 506,507 + CSW01_02530 0.83 -2.9 506,534 + CSW01_02530 0.86 -4.1 506,534 + CSW01_02530 0.86 -1.9 506,602 + -3.9 506,602 + -1.9 506,665 + +1.0 507,965 + +0.7
Or see this region's nucleotide sequence