Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02470

Experiment: ICP3_phage_41.1_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02465 and CSW01_02470 are separated by 111 nucleotidesCSW01_02470 and CSW01_02475 are separated by 84 nucleotides CSW01_02465: CSW01_02465 - twitching motility protein PilT, at 491,088 to 492,194 _02465 CSW01_02470: CSW01_02470 - LuxR family transcriptional regulator, at 492,306 to 493,109 _02470 CSW01_02475: CSW01_02475 - tyrosine--tRNA ligase, at 493,194 to 494,498 _02475 Position (kb) 492 493 494Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 491.328 kb on - strand, within CSW01_02465at 491.367 kb on - strand, within CSW01_02465at 491.395 kb on + strand, within CSW01_02465at 491.395 kb on + strand, within CSW01_02465at 491.395 kb on + strand, within CSW01_02465at 491.403 kb on - strand, within CSW01_02465at 491.403 kb on - strand, within CSW01_02465at 491.452 kb on + strand, within CSW01_02465at 491.526 kb on - strand, within CSW01_02465at 491.526 kb on - strand, within CSW01_02465at 491.619 kb on - strand, within CSW01_02465at 491.750 kb on + strand, within CSW01_02465at 491.750 kb on + strand, within CSW01_02465at 491.858 kb on + strand, within CSW01_02465at 491.866 kb on - strand, within CSW01_02465at 491.907 kb on + strand, within CSW01_02465at 491.907 kb on + strand, within CSW01_02465at 491.907 kb on + strand, within CSW01_02465at 491.933 kb on + strand, within CSW01_02465at 491.936 kb on - strand, within CSW01_02465at 492.019 kb on - strand, within CSW01_02465at 492.039 kb on + strand, within CSW01_02465at 492.084 kb on + strandat 492.084 kb on + strandat 492.084 kb on + strandat 492.084 kb on + strandat 492.084 kb on + strandat 492.084 kb on + strandat 492.084 kb on + strandat 492.084 kb on + strandat 492.087 kb on - strandat 492.089 kb on + strandat 492.092 kb on - strandat 492.092 kb on - strandat 492.092 kb on - strandat 492.092 kb on - strandat 492.092 kb on - strandat 492.094 kb on + strandat 492.097 kb on - strandat 492.102 kb on - strandat 492.125 kb on + strandat 492.133 kb on - strandat 492.236 kb on - strandat 492.261 kb on + strandat 492.266 kb on + strandat 492.399 kb on + strand, within CSW01_02470at 492.399 kb on + strand, within CSW01_02470at 492.407 kb on - strand, within CSW01_02470at 492.417 kb on - strand, within CSW01_02470at 492.519 kb on - strand, within CSW01_02470at 492.556 kb on - strand, within CSW01_02470at 492.579 kb on + strand, within CSW01_02470at 492.727 kb on + strand, within CSW01_02470at 492.727 kb on + strand, within CSW01_02470at 492.727 kb on + strand, within CSW01_02470at 492.727 kb on + strand, within CSW01_02470at 492.727 kb on + strand, within CSW01_02470at 492.727 kb on + strand, within CSW01_02470at 492.727 kb on + strand, within CSW01_02470at 492.735 kb on - strand, within CSW01_02470at 492.735 kb on - strand, within CSW01_02470at 492.735 kb on - strand, within CSW01_02470at 492.735 kb on - strand, within CSW01_02470at 492.735 kb on - strand, within CSW01_02470at 492.758 kb on + strand, within CSW01_02470at 492.758 kb on + strand, within CSW01_02470at 492.758 kb on + strand, within CSW01_02470at 492.796 kb on - strand, within CSW01_02470at 492.855 kb on + strand, within CSW01_02470at 492.855 kb on + strand, within CSW01_02470at 492.856 kb on + strand, within CSW01_02470at 492.869 kb on + strand, within CSW01_02470at 492.874 kb on + strand, within CSW01_02470at 492.908 kb on + strand, within CSW01_02470at 492.910 kb on + strand, within CSW01_02470at 492.916 kb on - strand, within CSW01_02470at 492.916 kb on - strand, within CSW01_02470at 492.918 kb on - strand, within CSW01_02470at 492.918 kb on - strand, within CSW01_02470at 492.934 kb on + strand, within CSW01_02470at 492.954 kb on + strand, within CSW01_02470at 492.954 kb on + strand, within CSW01_02470at 493.001 kb on - strand, within CSW01_02470at 493.018 kb on - strand, within CSW01_02470at 493.035 kb on - strandat 493.038 kb on - strandat 493.111 kb on - strandat 493.150 kb on - strandat 493.173 kb on + strandat 493.225 kb on - strandat 493.243 kb on + strandat 493.243 kb on + strandat 493.243 kb on + strandat 493.251 kb on - strandat 493.271 kb on + strandat 493.271 kb on + strandat 493.278 kb on + strandat 493.278 kb on + strandat 493.278 kb on + strandat 493.278 kb on + strandat 493.278 kb on + strandat 493.279 kb on - strandat 493.279 kb on - strandat 493.286 kb on - strandat 493.286 kb on - strandat 493.322 kb on + strandat 493.330 kb on + strand, within CSW01_02475at 493.384 kb on + strand, within CSW01_02475at 493.427 kb on + strand, within CSW01_02475at 493.481 kb on + strand, within CSW01_02475at 493.484 kb on + strand, within CSW01_02475at 493.484 kb on + strand, within CSW01_02475at 493.484 kb on + strand, within CSW01_02475at 493.484 kb on + strand, within CSW01_02475at 493.484 kb on + strand, within CSW01_02475at 493.484 kb on + strand, within CSW01_02475at 493.484 kb on + strand, within CSW01_02475at 493.484 kb on + strand, within CSW01_02475at 493.492 kb on - strand, within CSW01_02475at 493.492 kb on - strand, within CSW01_02475at 493.511 kb on - strand, within CSW01_02475at 493.516 kb on - strand, within CSW01_02475at 493.522 kb on + strand, within CSW01_02475at 493.552 kb on - strand, within CSW01_02475at 493.568 kb on - strand, within CSW01_02475at 493.589 kb on + strand, within CSW01_02475at 493.692 kb on - strand, within CSW01_02475at 493.710 kb on + strand, within CSW01_02475at 493.710 kb on + strand, within CSW01_02475at 493.723 kb on - strand, within CSW01_02475at 493.736 kb on + strand, within CSW01_02475at 493.736 kb on + strand, within CSW01_02475at 493.736 kb on + strand, within CSW01_02475at 493.755 kb on + strand, within CSW01_02475at 493.780 kb on - strand, within CSW01_02475at 493.805 kb on - strand, within CSW01_02475at 493.837 kb on + strand, within CSW01_02475at 493.840 kb on + strand, within CSW01_02475at 493.848 kb on - strand, within CSW01_02475at 493.859 kb on + strand, within CSW01_02475at 493.867 kb on + strand, within CSW01_02475at 493.867 kb on + strand, within CSW01_02475at 493.867 kb on + strand, within CSW01_02475at 493.867 kb on + strand, within CSW01_02475at 493.867 kb on + strand, within CSW01_02475at 493.867 kb on + strand, within CSW01_02475at 493.867 kb on + strand, within CSW01_02475at 493.867 kb on + strand, within CSW01_02475at 493.867 kb on + strand, within CSW01_02475at 493.874 kb on + strand, within CSW01_02475at 493.875 kb on - strand, within CSW01_02475at 493.875 kb on - strand, within CSW01_02475at 493.875 kb on - strand, within CSW01_02475at 493.875 kb on - strand, within CSW01_02475at 493.875 kb on - strand, within CSW01_02475at 493.875 kb on - strand, within CSW01_02475at 493.875 kb on - strand, within CSW01_02475at 493.875 kb on - strand, within CSW01_02475at 493.875 kb on - strand, within CSW01_02475at 493.875 kb on - strand, within CSW01_02475at 493.875 kb on - strand, within CSW01_02475at 493.882 kb on + strand, within CSW01_02475at 493.890 kb on - strand, within CSW01_02475at 493.890 kb on - strand, within CSW01_02475at 493.890 kb on - strand, within CSW01_02475at 493.890 kb on - strand, within CSW01_02475at 493.947 kb on - strand, within CSW01_02475at 494.019 kb on + strand, within CSW01_02475at 494.045 kb on - strand, within CSW01_02475at 494.051 kb on + strand, within CSW01_02475

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep1
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491,328 - CSW01_02465 0.22 +0.8
491,367 - CSW01_02465 0.25 +0.8
491,395 + CSW01_02465 0.28 +2.2
491,395 + CSW01_02465 0.28 -4.2
491,395 + CSW01_02465 0.28 +1.0
491,403 - CSW01_02465 0.28 -0.0
491,403 - CSW01_02465 0.28 -0.8
491,452 + CSW01_02465 0.33 -1.1
491,526 - CSW01_02465 0.40 -2.8
491,526 - CSW01_02465 0.40 +0.4
491,619 - CSW01_02465 0.48 -2.2
491,750 + CSW01_02465 0.60 -0.1
491,750 + CSW01_02465 0.60 +2.6
491,858 + CSW01_02465 0.70 +0.2
491,866 - CSW01_02465 0.70 +0.1
491,907 + CSW01_02465 0.74 -2.9
491,907 + CSW01_02465 0.74 -2.6
491,907 + CSW01_02465 0.74 -1.5
491,933 + CSW01_02465 0.76 -0.1
491,936 - CSW01_02465 0.77 +2.1
492,019 - CSW01_02465 0.84 +0.6
492,039 + CSW01_02465 0.86 +1.2
492,084 + -2.1
492,084 + +2.0
492,084 + -0.2
492,084 + -0.5
492,084 + +0.4
492,084 + -2.2
492,084 + +1.5
492,084 + -1.5
492,087 - +1.7
492,089 + -1.6
492,092 - +1.1
492,092 - -0.0
492,092 - +0.9
492,092 - -0.1
492,092 - +0.7
492,094 + -0.7
492,097 - -2.2
492,102 - +0.1
492,125 + -0.0
492,133 - +0.7
492,236 - -0.5
492,261 + -1.2
492,266 + -1.9
492,399 + CSW01_02470 0.12 -1.9
492,399 + CSW01_02470 0.12 -4.3
492,407 - CSW01_02470 0.13 +2.5
492,417 - CSW01_02470 0.14 -0.1
492,519 - CSW01_02470 0.26 -0.1
492,556 - CSW01_02470 0.31 +0.9
492,579 + CSW01_02470 0.34 -1.8
492,727 + CSW01_02470 0.52 -2.5
492,727 + CSW01_02470 0.52 -1.3
492,727 + CSW01_02470 0.52 +0.1
492,727 + CSW01_02470 0.52 -2.0
492,727 + CSW01_02470 0.52 -4.1
492,727 + CSW01_02470 0.52 -3.9
492,727 + CSW01_02470 0.52 +0.3
492,735 - CSW01_02470 0.53 -0.2
492,735 - CSW01_02470 0.53 -0.5
492,735 - CSW01_02470 0.53 -2.1
492,735 - CSW01_02470 0.53 +0.1
492,735 - CSW01_02470 0.53 -0.4
492,758 + CSW01_02470 0.56 -1.6
492,758 + CSW01_02470 0.56 -0.4
492,758 + CSW01_02470 0.56 -2.9
492,796 - CSW01_02470 0.61 -3.4
492,855 + CSW01_02470 0.68 +2.3
492,855 + CSW01_02470 0.68 +0.4
492,856 + CSW01_02470 0.68 +0.5
492,869 + CSW01_02470 0.70 -1.4
492,874 + CSW01_02470 0.71 +0.1
492,908 + CSW01_02470 0.75 -0.8
492,910 + CSW01_02470 0.75 -0.6
492,916 - CSW01_02470 0.76 +0.7
492,916 - CSW01_02470 0.76 -1.8
492,918 - CSW01_02470 0.76 +0.8
492,918 - CSW01_02470 0.76 +1.9
492,934 + CSW01_02470 0.78 +1.2
492,954 + CSW01_02470 0.81 -0.7
492,954 + CSW01_02470 0.81 -2.4
493,001 - CSW01_02470 0.86 -0.2
493,018 - CSW01_02470 0.89 -0.6
493,035 - +1.4
493,038 - -0.2
493,111 - -1.4
493,150 - -0.7
493,173 + -0.5
493,225 - -2.2
493,243 + -1.6
493,243 + -4.9
493,243 + +1.1
493,251 - +0.3
493,271 + +2.5
493,271 + -1.8
493,278 + +0.4
493,278 + +0.3
493,278 + +0.4
493,278 + -0.1
493,278 + -0.7
493,279 - -1.5
493,279 - -0.3
493,286 - +0.8
493,286 - -1.9
493,322 + +0.5
493,330 + CSW01_02475 0.10 +0.3
493,384 + CSW01_02475 0.15 -0.3
493,427 + CSW01_02475 0.18 -0.7
493,481 + CSW01_02475 0.22 -0.2
493,484 + CSW01_02475 0.22 -0.0
493,484 + CSW01_02475 0.22 -3.1
493,484 + CSW01_02475 0.22 +1.2
493,484 + CSW01_02475 0.22 -0.4
493,484 + CSW01_02475 0.22 +1.4
493,484 + CSW01_02475 0.22 +0.5
493,484 + CSW01_02475 0.22 -0.5
493,484 + CSW01_02475 0.22 +0.1
493,492 - CSW01_02475 0.23 -2.6
493,492 - CSW01_02475 0.23 -0.5
493,511 - CSW01_02475 0.24 +1.8
493,516 - CSW01_02475 0.25 -5.0
493,522 + CSW01_02475 0.25 -0.8
493,552 - CSW01_02475 0.27 -1.2
493,568 - CSW01_02475 0.29 -0.2
493,589 + CSW01_02475 0.30 +0.3
493,692 - CSW01_02475 0.38 +0.4
493,710 + CSW01_02475 0.40 -2.2
493,710 + CSW01_02475 0.40 -1.1
493,723 - CSW01_02475 0.41 +1.0
493,736 + CSW01_02475 0.42 -0.3
493,736 + CSW01_02475 0.42 -0.6
493,736 + CSW01_02475 0.42 +1.0
493,755 + CSW01_02475 0.43 +2.4
493,780 - CSW01_02475 0.45 -2.8
493,805 - CSW01_02475 0.47 -2.3
493,837 + CSW01_02475 0.49 -1.2
493,840 + CSW01_02475 0.50 -1.5
493,848 - CSW01_02475 0.50 +2.2
493,859 + CSW01_02475 0.51 -3.9
493,867 + CSW01_02475 0.52 +0.4
493,867 + CSW01_02475 0.52 -2.8
493,867 + CSW01_02475 0.52 -0.8
493,867 + CSW01_02475 0.52 +0.1
493,867 + CSW01_02475 0.52 +0.9
493,867 + CSW01_02475 0.52 -3.0
493,867 + CSW01_02475 0.52 -0.4
493,867 + CSW01_02475 0.52 +1.0
493,867 + CSW01_02475 0.52 -1.3
493,874 + CSW01_02475 0.52 -2.4
493,875 - CSW01_02475 0.52 -2.6
493,875 - CSW01_02475 0.52 -0.4
493,875 - CSW01_02475 0.52 +0.2
493,875 - CSW01_02475 0.52 -3.7
493,875 - CSW01_02475 0.52 -0.1
493,875 - CSW01_02475 0.52 -3.3
493,875 - CSW01_02475 0.52 -3.5
493,875 - CSW01_02475 0.52 +0.4
493,875 - CSW01_02475 0.52 +1.7
493,875 - CSW01_02475 0.52 +0.6
493,875 - CSW01_02475 0.52 -2.9
493,882 + CSW01_02475 0.53 +0.4
493,890 - CSW01_02475 0.53 -3.6
493,890 - CSW01_02475 0.53 +1.9
493,890 - CSW01_02475 0.53 +0.8
493,890 - CSW01_02475 0.53 -3.6
493,947 - CSW01_02475 0.58 +1.0
494,019 + CSW01_02475 0.63 -0.3
494,045 - CSW01_02475 0.65 +1.2
494,051 + CSW01_02475 0.66 -0.7

Or see this region's nucleotide sequence