Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_01505

Experiment: ICP3_phage_41.1_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_01500 and CSW01_01505 are separated by 208 nucleotidesCSW01_01505 and CSW01_01510 are separated by 14 nucleotidesCSW01_01510 and CSW01_01515 are separated by 56 nucleotides CSW01_01500: CSW01_01500 - 50S ribosomal protein L11 methyltransferase, at 300,057 to 300,944 _01500 CSW01_01505: CSW01_01505 - acetyl-CoA carboxylase biotin carboxylase subunit, at 301,153 to 302,496 _01505 CSW01_01510: CSW01_01510 - acetyl-CoA carboxylase biotin carboxyl carrier protein subunit, at 302,511 to 302,972 _01510 CSW01_01515: CSW01_01515 - type II 3-dehydroquinate dehydratase, at 303,029 to 303,481 _01515 Position (kb) 301 302 303Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 300.196 kb on + strand, within CSW01_01500at 300.196 kb on + strand, within CSW01_01500at 300.204 kb on - strand, within CSW01_01500at 300.236 kb on - strand, within CSW01_01500at 300.238 kb on + strand, within CSW01_01500at 300.244 kb on + strand, within CSW01_01500at 300.252 kb on - strand, within CSW01_01500at 300.265 kb on + strand, within CSW01_01500at 300.340 kb on + strand, within CSW01_01500at 300.348 kb on - strand, within CSW01_01500at 300.390 kb on - strand, within CSW01_01500at 300.400 kb on + strand, within CSW01_01500at 300.473 kb on + strand, within CSW01_01500at 300.481 kb on - strand, within CSW01_01500at 300.481 kb on - strand, within CSW01_01500at 300.492 kb on + strand, within CSW01_01500at 300.499 kb on - strand, within CSW01_01500at 300.499 kb on - strand, within CSW01_01500at 300.501 kb on - strand, within CSW01_01500at 300.501 kb on - strand, within CSW01_01500at 300.508 kb on + strand, within CSW01_01500at 300.508 kb on + strand, within CSW01_01500at 300.508 kb on + strand, within CSW01_01500at 300.508 kb on + strand, within CSW01_01500at 300.508 kb on + strand, within CSW01_01500at 300.516 kb on - strand, within CSW01_01500at 300.524 kb on - strand, within CSW01_01500at 300.534 kb on + strand, within CSW01_01500at 300.535 kb on + strand, within CSW01_01500at 300.581 kb on - strand, within CSW01_01500at 300.590 kb on + strand, within CSW01_01500at 300.598 kb on - strand, within CSW01_01500at 300.604 kb on - strand, within CSW01_01500at 300.609 kb on - strand, within CSW01_01500at 300.628 kb on + strand, within CSW01_01500at 300.636 kb on - strand, within CSW01_01500at 300.747 kb on + strand, within CSW01_01500at 300.755 kb on - strand, within CSW01_01500at 300.765 kb on - strand, within CSW01_01500at 300.765 kb on - strand, within CSW01_01500at 300.765 kb on - strand, within CSW01_01500at 300.784 kb on - strand, within CSW01_01500at 300.807 kb on + strand, within CSW01_01500at 300.809 kb on + strand, within CSW01_01500at 300.814 kb on + strand, within CSW01_01500at 300.852 kb on + strand, within CSW01_01500at 300.852 kb on + strand, within CSW01_01500at 300.860 kb on - strandat 300.970 kb on - strandat 300.978 kb on + strandat 300.983 kb on + strandat 300.988 kb on - strandat 300.988 kb on - strandat 300.988 kb on - strandat 300.988 kb on - strandat 300.988 kb on - strandat 301.072 kb on - strandat 301.189 kb on - strandat 303.206 kb on - strand, within CSW01_01515at 303.206 kb on - strand, within CSW01_01515at 303.229 kb on - strand, within CSW01_01515at 303.238 kb on - strand, within CSW01_01515at 303.243 kb on - strand, within CSW01_01515at 303.393 kb on - strand, within CSW01_01515at 303.393 kb on - strand, within CSW01_01515at 303.393 kb on - strand, within CSW01_01515at 303.393 kb on - strand, within CSW01_01515at 303.393 kb on - strand, within CSW01_01515at 303.417 kb on - strand, within CSW01_01515

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep1
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300,196 + CSW01_01500 0.16 -0.8
300,196 + CSW01_01500 0.16 +0.5
300,204 - CSW01_01500 0.17 -0.4
300,236 - CSW01_01500 0.20 -0.3
300,238 + CSW01_01500 0.20 +0.1
300,244 + CSW01_01500 0.21 +0.4
300,252 - CSW01_01500 0.22 -2.9
300,265 + CSW01_01500 0.23 +0.2
300,340 + CSW01_01500 0.32 -2.4
300,348 - CSW01_01500 0.33 +0.3
300,390 - CSW01_01500 0.38 -3.0
300,400 + CSW01_01500 0.39 -3.1
300,473 + CSW01_01500 0.47 +0.6
300,481 - CSW01_01500 0.48 +0.1
300,481 - CSW01_01500 0.48 +0.6
300,492 + CSW01_01500 0.49 -3.7
300,499 - CSW01_01500 0.50 -1.0
300,499 - CSW01_01500 0.50 -3.0
300,501 - CSW01_01500 0.50 +0.2
300,501 - CSW01_01500 0.50 -2.8
300,508 + CSW01_01500 0.51 +0.7
300,508 + CSW01_01500 0.51 +0.4
300,508 + CSW01_01500 0.51 +0.2
300,508 + CSW01_01500 0.51 +0.7
300,508 + CSW01_01500 0.51 -1.4
300,516 - CSW01_01500 0.52 +1.3
300,524 - CSW01_01500 0.53 +0.1
300,534 + CSW01_01500 0.54 +0.6
300,535 + CSW01_01500 0.54 -0.5
300,581 - CSW01_01500 0.59 -1.9
300,590 + CSW01_01500 0.60 -3.1
300,598 - CSW01_01500 0.61 +0.4
300,604 - CSW01_01500 0.62 -4.3
300,609 - CSW01_01500 0.62 -3.3
300,628 + CSW01_01500 0.64 -3.6
300,636 - CSW01_01500 0.65 +1.9
300,747 + CSW01_01500 0.78 -3.4
300,755 - CSW01_01500 0.79 +1.1
300,765 - CSW01_01500 0.80 -0.3
300,765 - CSW01_01500 0.80 -0.3
300,765 - CSW01_01500 0.80 +0.5
300,784 - CSW01_01500 0.82 -0.3
300,807 + CSW01_01500 0.84 +0.5
300,809 + CSW01_01500 0.85 -0.2
300,814 + CSW01_01500 0.85 +1.0
300,852 + CSW01_01500 0.90 +0.5
300,852 + CSW01_01500 0.90 -1.2
300,860 - +0.3
300,970 - +1.8
300,978 + +0.5
300,983 + +0.5
300,988 - -0.1
300,988 - +0.9
300,988 - -2.1
300,988 - +0.2
300,988 - +2.2
301,072 - -3.5
301,189 - +0.3
303,206 - CSW01_01515 0.39 -1.8
303,206 - CSW01_01515 0.39 +0.5
303,229 - CSW01_01515 0.44 +1.0
303,238 - CSW01_01515 0.46 -1.4
303,243 - CSW01_01515 0.47 +0.2
303,393 - CSW01_01515 0.80 -2.3
303,393 - CSW01_01515 0.80 -1.0
303,393 - CSW01_01515 0.80 -1.2
303,393 - CSW01_01515 0.80 -1.4
303,393 - CSW01_01515 0.80 -2.3
303,417 - CSW01_01515 0.86 -1.2

Or see this region's nucleotide sequence