Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_01320

Experiment: ICP3_phage_41.1_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_01315 and CSW01_01320 overlap by 10 nucleotidesCSW01_01320 and CSW01_01325 are separated by 69 nucleotidesCSW01_01325 and CSW01_01330 are separated by 99 nucleotides CSW01_01315: CSW01_01315 - NAD-dependent alcohol dehydrogenase, at 256,178 to 257,302 _01315 CSW01_01320: CSW01_01320 - acyl-CoA reductase, at 257,293 to 259,770 _01320 CSW01_01325: CSW01_01325 - acetyltransferase, at 259,840 to 260,406 _01325 CSW01_01330: CSW01_01330 - oxidoreductase, at 260,506 to 260,646 _01330 Position (kb) 257 258 259 260Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5 6at 256.320 kb on + strand, within CSW01_01315at 256.328 kb on - strand, within CSW01_01315at 256.345 kb on - strand, within CSW01_01315at 256.356 kb on + strand, within CSW01_01315at 256.364 kb on - strand, within CSW01_01315at 256.403 kb on - strand, within CSW01_01315at 256.403 kb on - strand, within CSW01_01315at 256.433 kb on - strand, within CSW01_01315at 256.455 kb on - strand, within CSW01_01315at 256.571 kb on - strand, within CSW01_01315at 256.634 kb on + strand, within CSW01_01315at 256.642 kb on + strand, within CSW01_01315at 256.660 kb on - strand, within CSW01_01315at 256.705 kb on - strand, within CSW01_01315at 256.774 kb on + strand, within CSW01_01315at 256.784 kb on + strand, within CSW01_01315at 256.798 kb on - strand, within CSW01_01315at 256.798 kb on - strand, within CSW01_01315at 256.843 kb on - strand, within CSW01_01315at 256.903 kb on + strand, within CSW01_01315at 256.904 kb on - strand, within CSW01_01315at 256.904 kb on - strand, within CSW01_01315at 256.923 kb on - strand, within CSW01_01315at 256.930 kb on - strand, within CSW01_01315at 256.983 kb on - strand, within CSW01_01315at 257.007 kb on - strand, within CSW01_01315at 257.017 kb on - strand, within CSW01_01315at 257.045 kb on - strand, within CSW01_01315at 257.068 kb on + strand, within CSW01_01315at 257.068 kb on + strand, within CSW01_01315at 257.077 kb on - strand, within CSW01_01315at 257.224 kb on + strandat 257.227 kb on - strandat 257.241 kb on + strandat 257.250 kb on - strandat 257.311 kb on + strandat 257.319 kb on - strandat 257.319 kb on - strandat 257.319 kb on - strandat 257.321 kb on + strandat 257.404 kb on - strandat 257.496 kb on + strandat 257.496 kb on + strandat 257.496 kb on + strandat 257.496 kb on + strandat 257.501 kb on + strandat 257.503 kb on + strandat 257.504 kb on - strandat 257.504 kb on - strandat 257.504 kb on - strandat 257.511 kb on - strandat 257.514 kb on - strandat 257.514 kb on - strandat 257.571 kb on + strand, within CSW01_01320at 257.601 kb on - strand, within CSW01_01320at 257.607 kb on - strand, within CSW01_01320at 257.630 kb on - strand, within CSW01_01320at 257.665 kb on - strand, within CSW01_01320at 257.671 kb on + strand, within CSW01_01320at 257.673 kb on + strand, within CSW01_01320at 257.687 kb on - strand, within CSW01_01320at 257.723 kb on + strand, within CSW01_01320at 257.731 kb on - strand, within CSW01_01320at 257.739 kb on + strand, within CSW01_01320at 257.747 kb on - strand, within CSW01_01320at 257.768 kb on - strand, within CSW01_01320at 257.814 kb on - strand, within CSW01_01320at 257.868 kb on - strand, within CSW01_01320at 257.929 kb on + strand, within CSW01_01320at 257.937 kb on - strand, within CSW01_01320at 257.939 kb on + strand, within CSW01_01320at 257.939 kb on + strand, within CSW01_01320at 257.947 kb on - strand, within CSW01_01320at 257.947 kb on - strand, within CSW01_01320at 257.947 kb on - strand, within CSW01_01320at 257.960 kb on + strand, within CSW01_01320at 257.970 kb on + strand, within CSW01_01320at 257.978 kb on - strand, within CSW01_01320at 257.978 kb on - strand, within CSW01_01320at 258.064 kb on + strand, within CSW01_01320at 258.165 kb on + strand, within CSW01_01320at 258.178 kb on - strand, within CSW01_01320at 258.200 kb on + strand, within CSW01_01320at 258.201 kb on + strand, within CSW01_01320at 258.210 kb on + strand, within CSW01_01320at 258.218 kb on - strand, within CSW01_01320at 258.509 kb on - strand, within CSW01_01320at 258.514 kb on - strand, within CSW01_01320at 258.583 kb on + strand, within CSW01_01320at 258.633 kb on + strand, within CSW01_01320at 258.715 kb on + strand, within CSW01_01320at 258.855 kb on + strand, within CSW01_01320at 258.959 kb on - strand, within CSW01_01320at 258.977 kb on - strand, within CSW01_01320at 259.064 kb on + strand, within CSW01_01320at 259.064 kb on + strand, within CSW01_01320at 259.064 kb on + strand, within CSW01_01320at 259.064 kb on + strand, within CSW01_01320at 259.064 kb on + strand, within CSW01_01320at 259.072 kb on - strand, within CSW01_01320at 259.072 kb on - strand, within CSW01_01320at 259.074 kb on + strand, within CSW01_01320at 259.089 kb on - strand, within CSW01_01320at 259.157 kb on + strand, within CSW01_01320at 259.192 kb on + strand, within CSW01_01320at 259.192 kb on + strand, within CSW01_01320at 259.192 kb on + strand, within CSW01_01320at 259.192 kb on + strand, within CSW01_01320at 259.192 kb on + strand, within CSW01_01320at 259.200 kb on - strand, within CSW01_01320at 259.200 kb on - strand, within CSW01_01320at 259.316 kb on + strand, within CSW01_01320at 259.324 kb on - strand, within CSW01_01320at 259.326 kb on - strand, within CSW01_01320at 259.353 kb on + strand, within CSW01_01320at 259.361 kb on - strand, within CSW01_01320at 259.361 kb on - strand, within CSW01_01320at 259.371 kb on - strand, within CSW01_01320at 259.384 kb on + strand, within CSW01_01320at 259.384 kb on + strand, within CSW01_01320at 259.390 kb on + strand, within CSW01_01320at 259.467 kb on - strand, within CSW01_01320at 259.475 kb on + strand, within CSW01_01320at 259.480 kb on + strand, within CSW01_01320at 259.480 kb on + strand, within CSW01_01320at 259.488 kb on - strand, within CSW01_01320at 259.488 kb on - strand, within CSW01_01320at 259.572 kb on - strandat 259.582 kb on - strandat 259.658 kb on - strandat 259.658 kb on - strandat 259.658 kb on - strandat 259.670 kb on + strandat 259.670 kb on + strandat 259.723 kb on - strandat 259.736 kb on - strandat 259.736 kb on - strandat 259.751 kb on + strandat 259.763 kb on - strandat 259.771 kb on + strandat 259.772 kb on - strandat 259.870 kb on - strandat 259.926 kb on + strand, within CSW01_01325at 259.968 kb on + strand, within CSW01_01325at 260.037 kb on - strand, within CSW01_01325at 260.045 kb on - strand, within CSW01_01325at 260.450 kb on - strandat 260.623 kb on + strand, within CSW01_01330at 260.629 kb on + strand, within CSW01_01330at 260.662 kb on - strandat 260.702 kb on + strandat 260.765 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep1
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256,320 + CSW01_01315 0.13 +5.2
256,328 - CSW01_01315 0.13 +4.7
256,345 - CSW01_01315 0.15 +4.8
256,356 + CSW01_01315 0.16 +4.9
256,364 - CSW01_01315 0.17 +5.3
256,403 - CSW01_01315 0.20 +5.4
256,403 - CSW01_01315 0.20 +4.8
256,433 - CSW01_01315 0.23 +5.3
256,455 - CSW01_01315 0.25 +5.3
256,571 - CSW01_01315 0.35 +5.3
256,634 + CSW01_01315 0.41 +5.3
256,642 + CSW01_01315 0.41 +6.1
256,660 - CSW01_01315 0.43 +4.6
256,705 - CSW01_01315 0.47 +4.9
256,774 + CSW01_01315 0.53 +4.4
256,784 + CSW01_01315 0.54 +5.1
256,798 - CSW01_01315 0.55 +5.0
256,798 - CSW01_01315 0.55 +5.0
256,843 - CSW01_01315 0.59 +4.8
256,903 + CSW01_01315 0.64 +5.0
256,904 - CSW01_01315 0.65 +5.0
256,904 - CSW01_01315 0.65 +4.8
256,923 - CSW01_01315 0.66 +5.3
256,930 - CSW01_01315 0.67 +5.2
256,983 - CSW01_01315 0.72 +5.4
257,007 - CSW01_01315 0.74 +4.8
257,017 - CSW01_01315 0.75 +5.9
257,045 - CSW01_01315 0.77 +4.5
257,068 + CSW01_01315 0.79 +5.2
257,068 + CSW01_01315 0.79 +4.1
257,077 - CSW01_01315 0.80 +5.6
257,224 + +4.7
257,227 - +4.8
257,241 + +5.2
257,250 - +4.8
257,311 + +4.8
257,319 - +4.9
257,319 - +4.5
257,319 - +5.1
257,321 + +5.3
257,404 - +5.2
257,496 + +4.8
257,496 + +5.4
257,496 + +4.3
257,496 + +4.8
257,501 + +5.1
257,503 + +4.7
257,504 - +5.3
257,504 - +4.3
257,504 - +4.8
257,511 - +5.1
257,514 - +4.9
257,514 - +4.3
257,571 + CSW01_01320 0.11 +5.8
257,601 - CSW01_01320 0.12 +5.2
257,607 - CSW01_01320 0.13 +5.1
257,630 - CSW01_01320 0.14 +5.2
257,665 - CSW01_01320 0.15 +4.7
257,671 + CSW01_01320 0.15 +5.0
257,673 + CSW01_01320 0.15 +5.0
257,687 - CSW01_01320 0.16 +4.8
257,723 + CSW01_01320 0.17 +5.3
257,731 - CSW01_01320 0.18 +5.2
257,739 + CSW01_01320 0.18 +3.9
257,747 - CSW01_01320 0.18 +4.9
257,768 - CSW01_01320 0.19 +5.1
257,814 - CSW01_01320 0.21 +4.9
257,868 - CSW01_01320 0.23 +4.0
257,929 + CSW01_01320 0.26 +5.9
257,937 - CSW01_01320 0.26 +5.6
257,939 + CSW01_01320 0.26 +5.0
257,939 + CSW01_01320 0.26 +4.9
257,947 - CSW01_01320 0.26 +4.4
257,947 - CSW01_01320 0.26 +4.9
257,947 - CSW01_01320 0.26 +5.0
257,960 + CSW01_01320 0.27 +5.2
257,970 + CSW01_01320 0.27 +6.0
257,978 - CSW01_01320 0.28 +4.6
257,978 - CSW01_01320 0.28 +5.5
258,064 + CSW01_01320 0.31 +5.0
258,165 + CSW01_01320 0.35 +5.1
258,178 - CSW01_01320 0.36 +3.8
258,200 + CSW01_01320 0.37 +5.2
258,201 + CSW01_01320 0.37 +5.3
258,210 + CSW01_01320 0.37 +4.7
258,218 - CSW01_01320 0.37 +4.5
258,509 - CSW01_01320 0.49 +4.8
258,514 - CSW01_01320 0.49 +4.6
258,583 + CSW01_01320 0.52 +5.2
258,633 + CSW01_01320 0.54 +4.9
258,715 + CSW01_01320 0.57 +4.7
258,855 + CSW01_01320 0.63 +5.1
258,959 - CSW01_01320 0.67 +4.8
258,977 - CSW01_01320 0.68 +5.3
259,064 + CSW01_01320 0.71 +5.0
259,064 + CSW01_01320 0.71 +4.6
259,064 + CSW01_01320 0.71 +5.1
259,064 + CSW01_01320 0.71 +5.1
259,064 + CSW01_01320 0.71 +5.3
259,072 - CSW01_01320 0.72 +4.5
259,072 - CSW01_01320 0.72 +4.4
259,074 + CSW01_01320 0.72 +4.7
259,089 - CSW01_01320 0.72 +4.3
259,157 + CSW01_01320 0.75 +5.0
259,192 + CSW01_01320 0.77 +4.8
259,192 + CSW01_01320 0.77 +5.0
259,192 + CSW01_01320 0.77 +6.5
259,192 + CSW01_01320 0.77 +4.2
259,192 + CSW01_01320 0.77 +4.6
259,200 - CSW01_01320 0.77 +4.7
259,200 - CSW01_01320 0.77 +4.3
259,316 + CSW01_01320 0.82 +5.0
259,324 - CSW01_01320 0.82 +4.7
259,326 - CSW01_01320 0.82 +4.9
259,353 + CSW01_01320 0.83 +4.9
259,361 - CSW01_01320 0.83 +5.2
259,361 - CSW01_01320 0.83 +4.6
259,371 - CSW01_01320 0.84 +5.3
259,384 + CSW01_01320 0.84 +4.8
259,384 + CSW01_01320 0.84 +4.1
259,390 + CSW01_01320 0.85 +5.1
259,467 - CSW01_01320 0.88 +5.2
259,475 + CSW01_01320 0.88 +5.4
259,480 + CSW01_01320 0.88 +5.3
259,480 + CSW01_01320 0.88 +5.2
259,488 - CSW01_01320 0.89 +5.1
259,488 - CSW01_01320 0.89 +4.6
259,572 - +5.1
259,582 - +4.8
259,658 - +5.5
259,658 - +4.3
259,658 - +5.0
259,670 + +5.1
259,670 + +4.5
259,723 - +5.4
259,736 - +5.1
259,736 - +5.2
259,751 + +4.6
259,763 - +4.9
259,771 + +1.3
259,772 - +4.3
259,870 - +5.2
259,926 + CSW01_01325 0.15 +5.4
259,968 + CSW01_01325 0.23 +5.0
260,037 - CSW01_01325 0.35 +6.1
260,045 - CSW01_01325 0.36 +4.7
260,450 - +1.7
260,623 + CSW01_01330 0.83 -0.1
260,629 + CSW01_01330 0.87 +0.3
260,662 - -3.3
260,702 + -3.9
260,765 - +0.2

Or see this region's nucleotide sequence