Experiment: ICP3_phage_41.1_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_01220 and CSW01_01225 overlap by 10 nucleotides CSW01_01225 and CSW01_01230 overlap by 4 nucleotides
CSW01_01220: CSW01_01220 - capsular biosynthesis protein, at 235,339 to 236,922
_01220
CSW01_01225: CSW01_01225 - capsular biosynthesis protein, at 236,913 to 237,293
_01225
CSW01_01230: CSW01_01230 - 3-deoxy-D-manno-octulosonic acid transferase, at 237,290 to 238,609
_01230
Position (kb) 236
237
238 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 235.946 kb on + strand, within CSW01_01220 at 235.977 kb on + strand, within CSW01_01220 at 235.985 kb on - strand, within CSW01_01220 at 236.009 kb on - strand, within CSW01_01220 at 236.011 kb on + strand, within CSW01_01220 at 236.127 kb on - strand, within CSW01_01220 at 236.128 kb on + strand, within CSW01_01220 at 236.159 kb on + strand, within CSW01_01220 at 236.248 kb on - strand, within CSW01_01220 at 236.250 kb on + strand, within CSW01_01220 at 236.308 kb on - strand, within CSW01_01220 at 236.343 kb on + strand, within CSW01_01220 at 236.343 kb on + strand, within CSW01_01220 at 236.401 kb on - strand, within CSW01_01220 at 236.403 kb on + strand, within CSW01_01220 at 236.403 kb on + strand, within CSW01_01220 at 236.403 kb on + strand, within CSW01_01220 at 236.403 kb on + strand, within CSW01_01220 at 236.411 kb on - strand, within CSW01_01220 at 236.411 kb on - strand, within CSW01_01220 at 236.419 kb on - strand, within CSW01_01220 at 236.503 kb on - strand, within CSW01_01220 at 236.529 kb on - strand, within CSW01_01220 at 236.536 kb on + strand, within CSW01_01220 at 236.545 kb on + strand, within CSW01_01220 at 236.545 kb on + strand, within CSW01_01220 at 236.553 kb on - strand, within CSW01_01220 at 236.553 kb on - strand, within CSW01_01220 at 236.553 kb on - strand, within CSW01_01220 at 236.555 kb on - strand, within CSW01_01220 at 236.601 kb on + strand, within CSW01_01220 at 236.609 kb on + strand, within CSW01_01220 at 236.609 kb on - strand, within CSW01_01220 at 236.620 kb on + strand, within CSW01_01220 at 236.633 kb on - strand, within CSW01_01220 at 236.633 kb on - strand, within CSW01_01220 at 236.633 kb on - strand, within CSW01_01220 at 236.648 kb on + strand, within CSW01_01220 at 236.648 kb on + strand, within CSW01_01220 at 236.648 kb on + strand, within CSW01_01220 at 236.654 kb on - strand, within CSW01_01220 at 236.676 kb on + strand, within CSW01_01220 at 236.684 kb on - strand, within CSW01_01220 at 236.684 kb on - strand, within CSW01_01220 at 236.732 kb on - strand, within CSW01_01220 at 236.756 kb on + strand, within CSW01_01220 at 236.768 kb on + strand at 236.768 kb on + strand at 236.776 kb on - strand at 236.792 kb on - strand at 236.792 kb on - strand at 236.878 kb on + strand at 236.903 kb on - strand at 236.949 kb on + strand at 237.004 kb on + strand, within CSW01_01225 at 237.023 kb on - strand, within CSW01_01225 at 237.025 kb on + strand, within CSW01_01225 at 237.025 kb on + strand, within CSW01_01225 at 237.039 kb on - strand, within CSW01_01225 at 237.098 kb on + strand, within CSW01_01225 at 237.128 kb on + strand, within CSW01_01225 at 237.128 kb on + strand, within CSW01_01225 at 237.136 kb on - strand, within CSW01_01225 at 237.217 kb on - strand, within CSW01_01225 at 237.227 kb on + strand, within CSW01_01225 at 237.227 kb on + strand, within CSW01_01225 at 237.244 kb on + strand, within CSW01_01225 at 237.250 kb on + strand, within CSW01_01225
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep1 remove 235,946 + CSW01_01220 0.38 +0.4 235,977 + CSW01_01220 0.40 -1.4 235,985 - CSW01_01220 0.41 +0.1 236,009 - CSW01_01220 0.42 -1.8 236,011 + CSW01_01220 0.42 -0.1 236,127 - CSW01_01220 0.50 -2.3 236,128 + CSW01_01220 0.50 -0.1 236,159 + CSW01_01220 0.52 +0.0 236,248 - CSW01_01220 0.57 +0.7 236,250 + CSW01_01220 0.58 +0.2 236,308 - CSW01_01220 0.61 +1.1 236,343 + CSW01_01220 0.63 +0.1 236,343 + CSW01_01220 0.63 -1.6 236,401 - CSW01_01220 0.67 +1.5 236,403 + CSW01_01220 0.67 +1.7 236,403 + CSW01_01220 0.67 -1.1 236,403 + CSW01_01220 0.67 +0.3 236,403 + CSW01_01220 0.67 -1.2 236,411 - CSW01_01220 0.68 -0.9 236,411 - CSW01_01220 0.68 -0.8 236,419 - CSW01_01220 0.68 -0.7 236,503 - CSW01_01220 0.73 -2.3 236,529 - CSW01_01220 0.75 -3.5 236,536 + CSW01_01220 0.76 -0.7 236,545 + CSW01_01220 0.76 -3.3 236,545 + CSW01_01220 0.76 +1.7 236,553 - CSW01_01220 0.77 -3.5 236,553 - CSW01_01220 0.77 +0.1 236,553 - CSW01_01220 0.77 +0.3 236,555 - CSW01_01220 0.77 -0.0 236,601 + CSW01_01220 0.80 -5.3 236,609 + CSW01_01220 0.80 +1.5 236,609 - CSW01_01220 0.80 +0.6 236,620 + CSW01_01220 0.81 +0.5 236,633 - CSW01_01220 0.82 +0.8 236,633 - CSW01_01220 0.82 -0.6 236,633 - CSW01_01220 0.82 -2.7 236,648 + CSW01_01220 0.83 -2.5 236,648 + CSW01_01220 0.83 -0.9 236,648 + CSW01_01220 0.83 -1.2 236,654 - CSW01_01220 0.83 -1.0 236,676 + CSW01_01220 0.84 -0.4 236,684 - CSW01_01220 0.85 -2.5 236,684 - CSW01_01220 0.85 -3.5 236,732 - CSW01_01220 0.88 -3.4 236,756 + CSW01_01220 0.89 +1.0 236,768 + +1.7 236,768 + -1.8 236,776 - -0.1 236,792 - +1.1 236,792 - +0.9 236,878 + -0.6 236,903 - -3.4 236,949 + +0.9 237,004 + CSW01_01225 0.24 +0.2 237,023 - CSW01_01225 0.29 -2.0 237,025 + CSW01_01225 0.29 -0.4 237,025 + CSW01_01225 0.29 -3.7 237,039 - CSW01_01225 0.33 -2.9 237,098 + CSW01_01225 0.49 -0.3 237,128 + CSW01_01225 0.56 -2.6 237,128 + CSW01_01225 0.56 +0.8 237,136 - CSW01_01225 0.59 -0.7 237,217 - CSW01_01225 0.80 +0.1 237,227 + CSW01_01225 0.82 +0.1 237,227 + CSW01_01225 0.82 -0.5 237,244 + CSW01_01225 0.87 -4.5 237,250 + CSW01_01225 0.88 +0.2
Or see this region's nucleotide sequence