Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_00415

Experiment: ICP3_phage_41.1_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_00405 and CSW01_00410 are separated by 56 nucleotidesCSW01_00410 and CSW01_00415 are separated by 45 nucleotidesCSW01_00415 and CSW01_00420 are separated by 23 nucleotidesCSW01_00420 and CSW01_00425 are separated by 75 nucleotides CSW01_00405: CSW01_00405 - EamA family transporter, at 75,267 to 76,154 _00405 CSW01_00410: CSW01_00410 - universal stress protein UspA, at 76,211 to 76,636 _00410 CSW01_00415: CSW01_00415 - hypothetical protein, at 76,682 to 76,777 _00415 CSW01_00420: CSW01_00420 - ferritin, at 76,801 to 77,328 _00420 CSW01_00425: CSW01_00425 - universal stress protein B, at 77,404 to 77,727 _00425 Position (kb) 76 77Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 75.698 kb on - strand, within CSW01_00405at 75.706 kb on + strand, within CSW01_00405at 75.713 kb on + strand, within CSW01_00405at 75.750 kb on + strand, within CSW01_00405at 75.786 kb on + strand, within CSW01_00405at 75.787 kb on - strand, within CSW01_00405at 75.792 kb on - strand, within CSW01_00405at 75.792 kb on - strand, within CSW01_00405at 75.888 kb on + strand, within CSW01_00405at 75.888 kb on + strand, within CSW01_00405at 75.888 kb on + strand, within CSW01_00405at 75.888 kb on + strand, within CSW01_00405at 75.888 kb on + strand, within CSW01_00405at 75.894 kb on + strand, within CSW01_00405at 75.896 kb on - strand, within CSW01_00405at 75.896 kb on - strand, within CSW01_00405at 75.904 kb on + strand, within CSW01_00405at 75.937 kb on + strand, within CSW01_00405at 75.951 kb on + strand, within CSW01_00405at 75.953 kb on + strand, within CSW01_00405at 75.996 kb on + strand, within CSW01_00405at 75.996 kb on + strand, within CSW01_00405at 76.004 kb on - strand, within CSW01_00405at 76.004 kb on - strand, within CSW01_00405at 76.004 kb on - strand, within CSW01_00405at 76.004 kb on - strand, within CSW01_00405at 76.037 kb on - strand, within CSW01_00405at 76.046 kb on - strand, within CSW01_00405at 76.085 kb on - strandat 76.099 kb on - strandat 76.099 kb on - strandat 76.128 kb on - strandat 76.147 kb on - strandat 76.151 kb on + strandat 76.151 kb on + strandat 76.151 kb on + strandat 76.172 kb on + strandat 76.187 kb on + strandat 76.261 kb on - strand, within CSW01_00410at 76.261 kb on - strand, within CSW01_00410at 76.267 kb on + strand, within CSW01_00410at 76.272 kb on + strand, within CSW01_00410at 76.275 kb on - strand, within CSW01_00410at 76.275 kb on - strand, within CSW01_00410at 76.316 kb on - strand, within CSW01_00410at 76.344 kb on + strand, within CSW01_00410at 76.362 kb on - strand, within CSW01_00410at 76.385 kb on + strand, within CSW01_00410at 76.410 kb on - strand, within CSW01_00410at 76.491 kb on + strand, within CSW01_00410at 76.491 kb on + strand, within CSW01_00410at 76.494 kb on + strand, within CSW01_00410at 76.496 kb on + strand, within CSW01_00410at 76.499 kb on - strand, within CSW01_00410at 76.499 kb on - strand, within CSW01_00410at 76.501 kb on + strand, within CSW01_00410at 76.501 kb on + strand, within CSW01_00410at 76.501 kb on + strand, within CSW01_00410at 76.502 kb on - strand, within CSW01_00410at 76.502 kb on - strand, within CSW01_00410at 76.502 kb on - strand, within CSW01_00410at 76.506 kb on + strand, within CSW01_00410at 76.509 kb on - strand, within CSW01_00410at 76.509 kb on - strand, within CSW01_00410at 76.511 kb on + strand, within CSW01_00410at 76.519 kb on - strand, within CSW01_00410at 76.519 kb on - strand, within CSW01_00410at 76.523 kb on - strand, within CSW01_00410at 76.559 kb on - strand, within CSW01_00410at 76.592 kb on - strand, within CSW01_00410at 76.600 kb on - strandat 76.603 kb on + strandat 76.659 kb on + strandat 76.659 kb on + strandat 76.659 kb on + strandat 76.659 kb on + strandat 76.659 kb on + strandat 76.659 kb on + strandat 76.667 kb on - strandat 76.669 kb on + strandat 76.669 kb on + strandat 76.669 kb on + strandat 76.669 kb on + strandat 76.669 kb on + strandat 76.674 kb on + strandat 76.674 kb on + strandat 76.674 kb on + strandat 76.674 kb on + strandat 76.677 kb on - strandat 76.677 kb on - strandat 76.677 kb on - strandat 76.680 kb on - strandat 76.682 kb on - strandat 76.682 kb on - strandat 76.682 kb on - strandat 76.724 kb on + strand, within CSW01_00415at 76.724 kb on + strand, within CSW01_00415at 76.756 kb on + strand, within CSW01_00415at 76.897 kb on + strand, within CSW01_00420at 76.923 kb on - strand, within CSW01_00420at 76.931 kb on - strand, within CSW01_00420at 76.976 kb on - strand, within CSW01_00420at 77.006 kb on + strand, within CSW01_00420at 77.049 kb on + strand, within CSW01_00420at 77.129 kb on + strand, within CSW01_00420at 77.130 kb on - strand, within CSW01_00420at 77.137 kb on - strand, within CSW01_00420at 77.146 kb on + strand, within CSW01_00420at 77.171 kb on + strand, within CSW01_00420at 77.179 kb on - strand, within CSW01_00420at 77.179 kb on - strand, within CSW01_00420at 77.179 kb on - strand, within CSW01_00420at 77.181 kb on + strand, within CSW01_00420at 77.181 kb on + strand, within CSW01_00420at 77.189 kb on - strand, within CSW01_00420at 77.219 kb on + strand, within CSW01_00420at 77.219 kb on + strand, within CSW01_00420at 77.219 kb on + strand, within CSW01_00420at 77.219 kb on + strand, within CSW01_00420at 77.219 kb on + strand, within CSW01_00420at 77.219 kb on + strand, within CSW01_00420at 77.219 kb on + strand, within CSW01_00420at 77.219 kb on + strand, within CSW01_00420at 77.219 kb on + strand, within CSW01_00420at 77.227 kb on - strand, within CSW01_00420at 77.227 kb on - strand, within CSW01_00420at 77.227 kb on - strand, within CSW01_00420at 77.387 kb on - strandat 77.395 kb on - strandat 77.429 kb on - strandat 77.474 kb on - strand, within CSW01_00425at 77.515 kb on - strand, within CSW01_00425at 77.546 kb on + strand, within CSW01_00425at 77.565 kb on - strand, within CSW01_00425at 77.565 kb on - strand, within CSW01_00425at 77.606 kb on + strand, within CSW01_00425at 77.614 kb on - strand, within CSW01_00425at 77.657 kb on + strand, within CSW01_00425at 77.657 kb on - strand, within CSW01_00425at 77.695 kb on + strandat 77.697 kb on - strandat 77.703 kb on - strandat 77.703 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep1
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75,698 - CSW01_00405 0.49 -0.3
75,706 + CSW01_00405 0.49 +0.7
75,713 + CSW01_00405 0.50 +0.9
75,750 + CSW01_00405 0.54 -2.7
75,786 + CSW01_00405 0.58 -1.1
75,787 - CSW01_00405 0.59 -0.3
75,792 - CSW01_00405 0.59 -0.6
75,792 - CSW01_00405 0.59 +1.3
75,888 + CSW01_00405 0.70 -0.0
75,888 + CSW01_00405 0.70 +2.2
75,888 + CSW01_00405 0.70 +0.3
75,888 + CSW01_00405 0.70 +0.2
75,888 + CSW01_00405 0.70 +0.3
75,894 + CSW01_00405 0.71 +1.1
75,896 - CSW01_00405 0.71 -2.1
75,896 - CSW01_00405 0.71 -0.7
75,904 + CSW01_00405 0.72 -2.8
75,937 + CSW01_00405 0.75 -2.3
75,951 + CSW01_00405 0.77 -3.1
75,953 + CSW01_00405 0.77 -1.7
75,996 + CSW01_00405 0.82 -4.3
75,996 + CSW01_00405 0.82 +1.1
76,004 - CSW01_00405 0.83 +0.5
76,004 - CSW01_00405 0.83 -3.2
76,004 - CSW01_00405 0.83 +1.3
76,004 - CSW01_00405 0.83 +0.3
76,037 - CSW01_00405 0.87 -0.4
76,046 - CSW01_00405 0.88 -2.7
76,085 - -2.4
76,099 - -1.3
76,099 - -3.4
76,128 - -4.2
76,147 - +0.6
76,151 + +0.8
76,151 + +0.1
76,151 + +0.6
76,172 + +0.6
76,187 + -0.8
76,261 - CSW01_00410 0.12 +0.3
76,261 - CSW01_00410 0.12 -0.0
76,267 + CSW01_00410 0.13 +0.2
76,272 + CSW01_00410 0.14 -1.7
76,275 - CSW01_00410 0.15 +0.4
76,275 - CSW01_00410 0.15 +1.7
76,316 - CSW01_00410 0.25 +0.8
76,344 + CSW01_00410 0.31 +0.4
76,362 - CSW01_00410 0.35 -0.8
76,385 + CSW01_00410 0.41 +2.2
76,410 - CSW01_00410 0.47 -0.8
76,491 + CSW01_00410 0.66 -0.3
76,491 + CSW01_00410 0.66 -0.7
76,494 + CSW01_00410 0.66 +0.6
76,496 + CSW01_00410 0.67 -3.5
76,499 - CSW01_00410 0.68 +0.2
76,499 - CSW01_00410 0.68 -4.4
76,501 + CSW01_00410 0.68 -0.4
76,501 + CSW01_00410 0.68 +0.6
76,501 + CSW01_00410 0.68 +1.0
76,502 - CSW01_00410 0.68 +0.0
76,502 - CSW01_00410 0.68 -3.8
76,502 - CSW01_00410 0.68 -3.4
76,506 + CSW01_00410 0.69 -0.6
76,509 - CSW01_00410 0.70 +0.9
76,509 - CSW01_00410 0.70 -2.0
76,511 + CSW01_00410 0.70 +0.6
76,519 - CSW01_00410 0.72 +0.9
76,519 - CSW01_00410 0.72 -0.9
76,523 - CSW01_00410 0.73 +2.3
76,559 - CSW01_00410 0.82 +0.7
76,592 - CSW01_00410 0.89 -1.6
76,600 - +0.4
76,603 + -0.2
76,659 + +0.3
76,659 + -1.6
76,659 + +2.1
76,659 + -0.2
76,659 + +0.5
76,659 + -0.8
76,667 - -0.1
76,669 + -3.0
76,669 + -0.7
76,669 + -0.7
76,669 + +2.7
76,669 + +0.4
76,674 + +0.7
76,674 + -3.5
76,674 + -0.7
76,674 + -0.7
76,677 - +0.9
76,677 - +0.6
76,677 - +0.1
76,680 - +0.3
76,682 - +0.5
76,682 - +1.5
76,682 - +0.9
76,724 + CSW01_00415 0.44 +0.4
76,724 + CSW01_00415 0.44 -0.6
76,756 + CSW01_00415 0.77 -3.1
76,897 + CSW01_00420 0.18 -0.7
76,923 - CSW01_00420 0.23 -1.3
76,931 - CSW01_00420 0.25 -2.9
76,976 - CSW01_00420 0.33 +0.2
77,006 + CSW01_00420 0.39 +1.0
77,049 + CSW01_00420 0.47 -2.0
77,129 + CSW01_00420 0.62 +1.3
77,130 - CSW01_00420 0.62 +0.9
77,137 - CSW01_00420 0.64 -0.5
77,146 + CSW01_00420 0.65 -0.2
77,171 + CSW01_00420 0.70 +0.8
77,179 - CSW01_00420 0.72 -1.7
77,179 - CSW01_00420 0.72 +1.7
77,179 - CSW01_00420 0.72 -0.3
77,181 + CSW01_00420 0.72 -3.6
77,181 + CSW01_00420 0.72 -3.7
77,189 - CSW01_00420 0.73 +0.2
77,219 + CSW01_00420 0.79 +0.6
77,219 + CSW01_00420 0.79 -0.8
77,219 + CSW01_00420 0.79 -3.4
77,219 + CSW01_00420 0.79 -2.8
77,219 + CSW01_00420 0.79 +2.4
77,219 + CSW01_00420 0.79 +0.5
77,219 + CSW01_00420 0.79 -3.0
77,219 + CSW01_00420 0.79 -4.2
77,219 + CSW01_00420 0.79 +0.4
77,227 - CSW01_00420 0.81 -0.1
77,227 - CSW01_00420 0.81 -0.0
77,227 - CSW01_00420 0.81 -1.4
77,387 - -0.3
77,395 - +0.6
77,429 - +0.7
77,474 - CSW01_00425 0.22 +0.2
77,515 - CSW01_00425 0.34 -0.3
77,546 + CSW01_00425 0.44 +0.2
77,565 - CSW01_00425 0.50 -2.8
77,565 - CSW01_00425 0.50 -0.7
77,606 + CSW01_00425 0.62 +0.2
77,614 - CSW01_00425 0.65 -0.7
77,657 + CSW01_00425 0.78 +0.2
77,657 - CSW01_00425 0.78 -0.0
77,695 + -3.3
77,697 - -1.4
77,703 - +1.4
77,703 - -0.3

Or see this region's nucleotide sequence