Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_00210

Experiment: ICP3_phage_41.1_MOI_rep1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_00200 and CSW01_00205 are separated by 77 nucleotidesCSW01_00205 and CSW01_00210 are separated by 38 nucleotidesCSW01_00210 and CSW01_00215 overlap by 88 nucleotides CSW01_00200: CSW01_00200 - sporulation control protein Spo0M, at 36,928 to 37,770 _00200 CSW01_00205: CSW01_00205 - hemolysin III family protein, at 37,848 to 38,495 _00205 CSW01_00210: CSW01_00210 - DUF3157 domain-containing protein, at 38,534 to 39,190 _00210 CSW01_00215: CSW01_00215 - potassium uptake protein TrkH, at 39,103 to 40,548 _00215 Position (kb) 38 39 40Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 37.552 kb on + strand, within CSW01_00200at 37.573 kb on - strand, within CSW01_00200at 37.596 kb on + strand, within CSW01_00200at 37.612 kb on - strand, within CSW01_00200at 37.616 kb on + strand, within CSW01_00200at 37.662 kb on - strand, within CSW01_00200at 37.664 kb on + strand, within CSW01_00200at 37.664 kb on + strand, within CSW01_00200at 37.683 kb on + strand, within CSW01_00200at 37.698 kb on + strandat 37.698 kb on + strandat 37.698 kb on + strandat 37.698 kb on + strandat 37.698 kb on + strandat 37.706 kb on - strandat 37.723 kb on - strandat 37.743 kb on - strandat 37.813 kb on - strandat 37.840 kb on + strandat 37.850 kb on - strandat 37.872 kb on - strandat 37.906 kb on + strandat 37.919 kb on - strand, within CSW01_00205at 37.933 kb on + strand, within CSW01_00205at 37.941 kb on - strand, within CSW01_00205at 37.949 kb on + strand, within CSW01_00205at 38.035 kb on + strand, within CSW01_00205at 38.035 kb on + strand, within CSW01_00205at 38.043 kb on - strand, within CSW01_00205at 38.045 kb on + strand, within CSW01_00205at 38.045 kb on + strand, within CSW01_00205at 38.045 kb on + strand, within CSW01_00205at 38.045 kb on + strand, within CSW01_00205at 38.045 kb on + strand, within CSW01_00205at 38.045 kb on + strand, within CSW01_00205at 38.045 kb on + strand, within CSW01_00205at 38.045 kb on + strand, within CSW01_00205at 38.045 kb on + strand, within CSW01_00205at 38.045 kb on + strand, within CSW01_00205at 38.053 kb on - strand, within CSW01_00205at 38.053 kb on - strand, within CSW01_00205at 38.053 kb on - strand, within CSW01_00205at 38.053 kb on - strand, within CSW01_00205at 38.053 kb on - strand, within CSW01_00205at 38.053 kb on - strand, within CSW01_00205at 38.053 kb on - strand, within CSW01_00205at 38.053 kb on - strand, within CSW01_00205at 38.053 kb on - strand, within CSW01_00205at 38.053 kb on - strand, within CSW01_00205at 38.053 kb on - strand, within CSW01_00205at 38.053 kb on - strand, within CSW01_00205at 38.053 kb on - strand, within CSW01_00205at 38.059 kb on - strand, within CSW01_00205at 38.064 kb on - strand, within CSW01_00205at 38.096 kb on + strand, within CSW01_00205at 38.097 kb on - strand, within CSW01_00205at 38.128 kb on + strand, within CSW01_00205at 38.128 kb on + strand, within CSW01_00205at 38.128 kb on + strand, within CSW01_00205at 38.128 kb on + strand, within CSW01_00205at 38.128 kb on + strand, within CSW01_00205at 38.136 kb on - strand, within CSW01_00205at 38.136 kb on - strand, within CSW01_00205at 38.136 kb on - strand, within CSW01_00205at 38.136 kb on - strand, within CSW01_00205at 38.136 kb on - strand, within CSW01_00205at 38.163 kb on + strand, within CSW01_00205at 38.171 kb on - strand, within CSW01_00205at 38.183 kb on - strand, within CSW01_00205at 38.183 kb on - strand, within CSW01_00205at 38.184 kb on + strand, within CSW01_00205at 38.187 kb on + strand, within CSW01_00205at 38.192 kb on - strand, within CSW01_00205at 38.205 kb on - strand, within CSW01_00205at 38.215 kb on - strand, within CSW01_00205at 38.328 kb on - strand, within CSW01_00205at 38.335 kb on + strand, within CSW01_00205at 38.358 kb on + strand, within CSW01_00205at 38.358 kb on + strand, within CSW01_00205at 38.431 kb on + strandat 38.431 kb on + strandat 38.439 kb on - strandat 38.439 kb on - strandat 38.441 kb on + strandat 38.587 kb on - strandat 38.593 kb on + strandat 38.593 kb on + strandat 38.594 kb on + strandat 38.594 kb on + strandat 38.601 kb on - strand, within CSW01_00210at 38.602 kb on - strand, within CSW01_00210at 38.617 kb on + strand, within CSW01_00210at 38.625 kb on - strand, within CSW01_00210at 38.625 kb on - strand, within CSW01_00210at 38.625 kb on - strand, within CSW01_00210at 38.625 kb on - strand, within CSW01_00210at 38.625 kb on - strand, within CSW01_00210at 38.642 kb on + strand, within CSW01_00210at 38.694 kb on - strand, within CSW01_00210at 38.772 kb on + strand, within CSW01_00210at 38.775 kb on - strand, within CSW01_00210at 38.775 kb on - strand, within CSW01_00210at 38.777 kb on + strand, within CSW01_00210at 38.791 kb on + strand, within CSW01_00210at 38.888 kb on + strand, within CSW01_00210at 38.896 kb on - strand, within CSW01_00210at 38.909 kb on + strand, within CSW01_00210at 38.917 kb on - strand, within CSW01_00210at 38.917 kb on - strand, within CSW01_00210at 38.955 kb on + strand, within CSW01_00210at 39.009 kb on - strand, within CSW01_00210at 39.018 kb on + strand, within CSW01_00210at 39.018 kb on + strand, within CSW01_00210at 39.018 kb on + strand, within CSW01_00210at 39.018 kb on + strand, within CSW01_00210at 39.018 kb on + strand, within CSW01_00210at 39.018 kb on + strand, within CSW01_00210at 39.026 kb on - strand, within CSW01_00210at 39.026 kb on - strand, within CSW01_00210at 39.026 kb on - strand, within CSW01_00210at 39.026 kb on - strand, within CSW01_00210at 39.026 kb on - strand, within CSW01_00210at 39.108 kb on - strandat 39.207 kb on - strandat 39.236 kb on + strandat 39.246 kb on + strandat 39.257 kb on + strand, within CSW01_00215at 39.265 kb on - strand, within CSW01_00215at 39.328 kb on + strand, within CSW01_00215at 39.347 kb on - strand, within CSW01_00215at 39.445 kb on - strand, within CSW01_00215at 39.446 kb on + strand, within CSW01_00215at 39.506 kb on - strand, within CSW01_00215at 39.520 kb on - strand, within CSW01_00215at 39.522 kb on - strand, within CSW01_00215at 39.522 kb on - strand, within CSW01_00215at 39.560 kb on + strand, within CSW01_00215at 39.629 kb on + strand, within CSW01_00215at 39.637 kb on - strand, within CSW01_00215at 39.687 kb on + strand, within CSW01_00215at 39.693 kb on - strand, within CSW01_00215at 39.749 kb on + strand, within CSW01_00215at 39.749 kb on + strand, within CSW01_00215at 39.749 kb on + strand, within CSW01_00215at 39.749 kb on + strand, within CSW01_00215at 39.749 kb on + strand, within CSW01_00215at 39.757 kb on - strand, within CSW01_00215at 39.757 kb on - strand, within CSW01_00215at 39.757 kb on - strand, within CSW01_00215at 39.757 kb on - strand, within CSW01_00215at 39.796 kb on + strand, within CSW01_00215at 39.833 kb on + strand, within CSW01_00215at 39.833 kb on + strand, within CSW01_00215at 39.833 kb on + strand, within CSW01_00215at 39.846 kb on - strand, within CSW01_00215at 39.873 kb on + strand, within CSW01_00215at 39.877 kb on + strand, within CSW01_00215at 39.940 kb on + strand, within CSW01_00215at 40.036 kb on + strand, within CSW01_00215at 40.036 kb on + strand, within CSW01_00215at 40.036 kb on + strand, within CSW01_00215at 40.036 kb on + strand, within CSW01_00215at 40.040 kb on - strand, within CSW01_00215at 40.044 kb on - strand, within CSW01_00215at 40.074 kb on + strand, within CSW01_00215at 40.081 kb on - strand, within CSW01_00215at 40.088 kb on + strand, within CSW01_00215at 40.130 kb on - strand, within CSW01_00215

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep1
remove
37,552 + CSW01_00200 0.74 -2.5
37,573 - CSW01_00200 0.77 +2.0
37,596 + CSW01_00200 0.79 +0.2
37,612 - CSW01_00200 0.81 -4.4
37,616 + CSW01_00200 0.82 +1.0
37,662 - CSW01_00200 0.87 -0.9
37,664 + CSW01_00200 0.87 -0.6
37,664 + CSW01_00200 0.87 -3.5
37,683 + CSW01_00200 0.90 +0.2
37,698 + -4.1
37,698 + +1.3
37,698 + +3.1
37,698 + +0.9
37,698 + -0.2
37,706 - +0.9
37,723 - -0.2
37,743 - -3.5
37,813 - +0.1
37,840 + -1.1
37,850 - +1.3
37,872 - -4.5
37,906 + +0.2
37,919 - CSW01_00205 0.11 -0.1
37,933 + CSW01_00205 0.13 -0.5
37,941 - CSW01_00205 0.14 -0.5
37,949 + CSW01_00205 0.16 -3.1
38,035 + CSW01_00205 0.29 -1.0
38,035 + CSW01_00205 0.29 -0.2
38,043 - CSW01_00205 0.30 -1.4
38,045 + CSW01_00205 0.30 -0.4
38,045 + CSW01_00205 0.30 -4.2
38,045 + CSW01_00205 0.30 +0.4
38,045 + CSW01_00205 0.30 -0.6
38,045 + CSW01_00205 0.30 +0.6
38,045 + CSW01_00205 0.30 +0.1
38,045 + CSW01_00205 0.30 -0.9
38,045 + CSW01_00205 0.30 +1.8
38,045 + CSW01_00205 0.30 +0.6
38,045 + CSW01_00205 0.30 -2.9
38,053 - CSW01_00205 0.32 -4.8
38,053 - CSW01_00205 0.32 -1.2
38,053 - CSW01_00205 0.32 -0.0
38,053 - CSW01_00205 0.32 +0.6
38,053 - CSW01_00205 0.32 -1.0
38,053 - CSW01_00205 0.32 +0.5
38,053 - CSW01_00205 0.32 +0.1
38,053 - CSW01_00205 0.32 +0.9
38,053 - CSW01_00205 0.32 +1.3
38,053 - CSW01_00205 0.32 +2.7
38,053 - CSW01_00205 0.32 +1.0
38,053 - CSW01_00205 0.32 +0.4
38,053 - CSW01_00205 0.32 -0.0
38,059 - CSW01_00205 0.33 -2.9
38,064 - CSW01_00205 0.33 +0.5
38,096 + CSW01_00205 0.38 +1.3
38,097 - CSW01_00205 0.38 +0.0
38,128 + CSW01_00205 0.43 -0.0
38,128 + CSW01_00205 0.43 +0.8
38,128 + CSW01_00205 0.43 -0.3
38,128 + CSW01_00205 0.43 +0.7
38,128 + CSW01_00205 0.43 +1.2
38,136 - CSW01_00205 0.44 -3.3
38,136 - CSW01_00205 0.44 -2.9
38,136 - CSW01_00205 0.44 +1.2
38,136 - CSW01_00205 0.44 -4.1
38,136 - CSW01_00205 0.44 +1.2
38,163 + CSW01_00205 0.49 -1.3
38,171 - CSW01_00205 0.50 -4.7
38,183 - CSW01_00205 0.52 -3.9
38,183 - CSW01_00205 0.52 +0.6
38,184 + CSW01_00205 0.52 -1.4
38,187 + CSW01_00205 0.52 -0.2
38,192 - CSW01_00205 0.53 -4.6
38,205 - CSW01_00205 0.55 +2.3
38,215 - CSW01_00205 0.57 +0.2
38,328 - CSW01_00205 0.74 -0.5
38,335 + CSW01_00205 0.75 +0.0
38,358 + CSW01_00205 0.79 -1.7
38,358 + CSW01_00205 0.79 -4.6
38,431 + +0.0
38,431 + -2.7
38,439 - -2.0
38,439 - +1.0
38,441 + +1.4
38,587 - +0.1
38,593 + -0.3
38,593 + -0.7
38,594 + -0.7
38,594 + -2.4
38,601 - CSW01_00210 0.10 -0.7
38,602 - CSW01_00210 0.10 +0.5
38,617 + CSW01_00210 0.13 +0.5
38,625 - CSW01_00210 0.14 -1.8
38,625 - CSW01_00210 0.14 -1.7
38,625 - CSW01_00210 0.14 -0.0
38,625 - CSW01_00210 0.14 +3.3
38,625 - CSW01_00210 0.14 +0.4
38,642 + CSW01_00210 0.16 +0.2
38,694 - CSW01_00210 0.24 -0.5
38,772 + CSW01_00210 0.36 -0.3
38,775 - CSW01_00210 0.37 +0.9
38,775 - CSW01_00210 0.37 +2.2
38,777 + CSW01_00210 0.37 -1.5
38,791 + CSW01_00210 0.39 -0.6
38,888 + CSW01_00210 0.54 -2.0
38,896 - CSW01_00210 0.55 -3.3
38,909 + CSW01_00210 0.57 +0.4
38,917 - CSW01_00210 0.58 -1.1
38,917 - CSW01_00210 0.58 +0.2
38,955 + CSW01_00210 0.64 +0.0
39,009 - CSW01_00210 0.72 -0.7
39,018 + CSW01_00210 0.74 +0.2
39,018 + CSW01_00210 0.74 +1.1
39,018 + CSW01_00210 0.74 -0.4
39,018 + CSW01_00210 0.74 +0.8
39,018 + CSW01_00210 0.74 -1.9
39,018 + CSW01_00210 0.74 -2.7
39,026 - CSW01_00210 0.75 -1.0
39,026 - CSW01_00210 0.75 -1.7
39,026 - CSW01_00210 0.75 -0.6
39,026 - CSW01_00210 0.75 -1.0
39,026 - CSW01_00210 0.75 -0.2
39,108 - +0.5
39,207 - -0.9
39,236 + +0.5
39,246 + +4.7
39,257 + CSW01_00215 0.11 +0.8
39,265 - CSW01_00215 0.11 +1.7
39,328 + CSW01_00215 0.16 +1.0
39,347 - CSW01_00215 0.17 +2.7
39,445 - CSW01_00215 0.24 +1.1
39,446 + CSW01_00215 0.24 +0.0
39,506 - CSW01_00215 0.28 +0.7
39,520 - CSW01_00215 0.29 +0.4
39,522 - CSW01_00215 0.29 +1.8
39,522 - CSW01_00215 0.29 +2.0
39,560 + CSW01_00215 0.32 +1.6
39,629 + CSW01_00215 0.36 +1.1
39,637 - CSW01_00215 0.37 +2.1
39,687 + CSW01_00215 0.40 +2.1
39,693 - CSW01_00215 0.41 -0.0
39,749 + CSW01_00215 0.45 +1.7
39,749 + CSW01_00215 0.45 +1.2
39,749 + CSW01_00215 0.45 +1.3
39,749 + CSW01_00215 0.45 +1.2
39,749 + CSW01_00215 0.45 +2.1
39,757 - CSW01_00215 0.45 -3.2
39,757 - CSW01_00215 0.45 -0.4
39,757 - CSW01_00215 0.45 +0.0
39,757 - CSW01_00215 0.45 -2.5
39,796 + CSW01_00215 0.48 +1.1
39,833 + CSW01_00215 0.50 +0.3
39,833 + CSW01_00215 0.50 -1.7
39,833 + CSW01_00215 0.50 +2.0
39,846 - CSW01_00215 0.51 +1.3
39,873 + CSW01_00215 0.53 -1.0
39,877 + CSW01_00215 0.54 +1.3
39,940 + CSW01_00215 0.58 +1.7
40,036 + CSW01_00215 0.65 +1.6
40,036 + CSW01_00215 0.65 +0.9
40,036 + CSW01_00215 0.65 +2.1
40,036 + CSW01_00215 0.65 -2.6
40,040 - CSW01_00215 0.65 +0.9
40,044 - CSW01_00215 0.65 +1.5
40,074 + CSW01_00215 0.67 -0.0
40,081 - CSW01_00215 0.68 +1.6
40,088 + CSW01_00215 0.68 +1.1
40,130 - CSW01_00215 0.71 -2.9

Or see this region's nucleotide sequence