Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_00170

Experiment: ICP3_phage_41.1_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_00165 and CSW01_00170 are separated by 77 nucleotidesCSW01_00170 and CSW01_00175 are separated by 30 nucleotides CSW01_00165: CSW01_00165 - acyltransferase, at 31,682 to 32,566 _00165 CSW01_00170: CSW01_00170 - thiol:disulfide interchange protein DsbA, at 32,644 to 33,246 _00170 CSW01_00175: CSW01_00175 - serine/threonine protein kinase, at 33,277 to 34,263 _00175 Position (kb) 32 33 34Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 31.665 kb on + strandat 31.665 kb on + strandat 31.673 kb on - strandat 31.705 kb on - strandat 31.708 kb on + strandat 31.712 kb on - strandat 31.716 kb on - strandat 31.779 kb on - strand, within CSW01_00165at 31.786 kb on + strand, within CSW01_00165at 31.786 kb on + strand, within CSW01_00165at 31.794 kb on - strand, within CSW01_00165at 31.805 kb on + strand, within CSW01_00165at 31.813 kb on - strand, within CSW01_00165at 31.847 kb on - strand, within CSW01_00165at 31.847 kb on - strand, within CSW01_00165at 31.858 kb on + strand, within CSW01_00165at 31.908 kb on + strand, within CSW01_00165at 31.916 kb on - strand, within CSW01_00165at 31.916 kb on - strand, within CSW01_00165at 31.925 kb on - strand, within CSW01_00165at 31.986 kb on - strand, within CSW01_00165at 32.007 kb on - strand, within CSW01_00165at 32.057 kb on + strand, within CSW01_00165at 32.075 kb on - strand, within CSW01_00165at 32.080 kb on - strand, within CSW01_00165at 32.117 kb on - strand, within CSW01_00165at 32.122 kb on - strand, within CSW01_00165at 32.186 kb on + strand, within CSW01_00165at 32.186 kb on + strand, within CSW01_00165at 32.186 kb on + strand, within CSW01_00165at 32.194 kb on - strand, within CSW01_00165at 32.206 kb on - strand, within CSW01_00165at 32.206 kb on - strand, within CSW01_00165at 32.206 kb on - strand, within CSW01_00165at 32.206 kb on - strand, within CSW01_00165at 32.222 kb on + strand, within CSW01_00165at 32.245 kb on + strand, within CSW01_00165at 32.286 kb on - strand, within CSW01_00165at 32.324 kb on - strand, within CSW01_00165at 32.348 kb on + strand, within CSW01_00165at 32.358 kb on + strand, within CSW01_00165at 32.375 kb on - strand, within CSW01_00165at 32.400 kb on + strand, within CSW01_00165at 32.400 kb on + strand, within CSW01_00165at 32.400 kb on + strand, within CSW01_00165at 32.400 kb on + strand, within CSW01_00165at 32.400 kb on + strand, within CSW01_00165at 32.400 kb on + strand, within CSW01_00165at 32.408 kb on - strand, within CSW01_00165at 32.408 kb on - strand, within CSW01_00165at 32.408 kb on - strand, within CSW01_00165at 32.408 kb on - strand, within CSW01_00165at 32.408 kb on - strand, within CSW01_00165at 32.408 kb on - strand, within CSW01_00165at 32.408 kb on - strand, within CSW01_00165at 32.417 kb on + strand, within CSW01_00165at 32.452 kb on + strand, within CSW01_00165at 32.480 kb on - strandat 32.490 kb on - strandat 32.509 kb on + strandat 32.514 kb on + strandat 32.514 kb on + strandat 32.522 kb on - strandat 32.531 kb on + strandat 32.531 kb on + strandat 32.532 kb on - strandat 32.532 kb on - strandat 32.592 kb on - strandat 32.637 kb on + strandat 32.702 kb on + strandat 32.815 kb on + strand, within CSW01_00170at 32.894 kb on + strand, within CSW01_00170at 32.894 kb on + strand, within CSW01_00170at 32.894 kb on + strand, within CSW01_00170at 32.904 kb on + strand, within CSW01_00170at 32.906 kb on + strand, within CSW01_00170at 32.906 kb on + strand, within CSW01_00170at 32.906 kb on + strand, within CSW01_00170at 32.906 kb on + strand, within CSW01_00170at 32.906 kb on + strand, within CSW01_00170at 32.907 kb on - strand, within CSW01_00170at 32.914 kb on - strand, within CSW01_00170at 33.006 kb on - strand, within CSW01_00170at 33.078 kb on + strand, within CSW01_00170at 33.086 kb on + strand, within CSW01_00170at 33.086 kb on + strand, within CSW01_00170at 33.086 kb on - strand, within CSW01_00170at 33.086 kb on - strand, within CSW01_00170at 33.086 kb on - strand, within CSW01_00170at 33.094 kb on - strand, within CSW01_00170at 33.098 kb on + strand, within CSW01_00170at 33.145 kb on - strand, within CSW01_00170at 33.189 kb on - strandat 33.196 kb on + strandat 33.204 kb on - strandat 33.211 kb on + strandat 33.218 kb on + strandat 33.218 kb on + strandat 33.219 kb on - strandat 33.269 kb on + strandat 33.275 kb on + strandat 33.317 kb on + strandat 33.330 kb on + strandat 33.330 kb on - strandat 33.405 kb on - strand, within CSW01_00175at 33.433 kb on + strand, within CSW01_00175at 33.433 kb on + strand, within CSW01_00175at 33.433 kb on + strand, within CSW01_00175at 33.433 kb on + strand, within CSW01_00175at 33.488 kb on - strand, within CSW01_00175at 33.501 kb on + strand, within CSW01_00175at 33.587 kb on + strand, within CSW01_00175at 33.676 kb on + strand, within CSW01_00175at 33.684 kb on - strand, within CSW01_00175at 33.703 kb on - strand, within CSW01_00175at 33.703 kb on - strand, within CSW01_00175at 33.772 kb on - strand, within CSW01_00175at 33.776 kb on + strand, within CSW01_00175at 33.808 kb on + strand, within CSW01_00175at 33.844 kb on + strand, within CSW01_00175at 33.844 kb on + strand, within CSW01_00175at 33.844 kb on + strand, within CSW01_00175at 33.895 kb on + strand, within CSW01_00175at 33.895 kb on + strand, within CSW01_00175at 33.903 kb on - strand, within CSW01_00175at 33.903 kb on - strand, within CSW01_00175at 33.903 kb on - strand, within CSW01_00175at 33.941 kb on + strand, within CSW01_00175at 33.951 kb on + strand, within CSW01_00175at 33.975 kb on + strand, within CSW01_00175at 33.976 kb on + strand, within CSW01_00175at 33.976 kb on + strand, within CSW01_00175at 33.983 kb on - strand, within CSW01_00175at 33.984 kb on - strand, within CSW01_00175at 33.984 kb on - strand, within CSW01_00175at 33.989 kb on - strand, within CSW01_00175at 33.997 kb on - strand, within CSW01_00175at 34.023 kb on + strand, within CSW01_00175at 34.029 kb on - strand, within CSW01_00175at 34.048 kb on + strand, within CSW01_00175at 34.056 kb on - strand, within CSW01_00175at 34.058 kb on + strand, within CSW01_00175at 34.066 kb on - strand, within CSW01_00175at 34.066 kb on - strand, within CSW01_00175at 34.083 kb on - strand, within CSW01_00175at 34.084 kb on - strand, within CSW01_00175at 34.084 kb on - strand, within CSW01_00175at 34.130 kb on - strand, within CSW01_00175at 34.182 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_41.1_MOI_rep1
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31,665 + -0.6
31,665 + -2.8
31,673 - +0.2
31,705 - -2.9
31,708 + +1.9
31,712 - +0.2
31,716 - -0.8
31,779 - CSW01_00165 0.11 +0.1
31,786 + CSW01_00165 0.12 +1.3
31,786 + CSW01_00165 0.12 +2.4
31,794 - CSW01_00165 0.13 -0.3
31,805 + CSW01_00165 0.14 -0.6
31,813 - CSW01_00165 0.15 -2.1
31,847 - CSW01_00165 0.19 +0.3
31,847 - CSW01_00165 0.19 +0.8
31,858 + CSW01_00165 0.20 -2.7
31,908 + CSW01_00165 0.26 -1.0
31,916 - CSW01_00165 0.26 +1.1
31,916 - CSW01_00165 0.26 -1.3
31,925 - CSW01_00165 0.27 +2.1
31,986 - CSW01_00165 0.34 +1.1
32,007 - CSW01_00165 0.37 -0.8
32,057 + CSW01_00165 0.42 +0.5
32,075 - CSW01_00165 0.44 -0.5
32,080 - CSW01_00165 0.45 +1.0
32,117 - CSW01_00165 0.49 +1.9
32,122 - CSW01_00165 0.50 +2.8
32,186 + CSW01_00165 0.57 -2.5
32,186 + CSW01_00165 0.57 -0.7
32,186 + CSW01_00165 0.57 -4.0
32,194 - CSW01_00165 0.58 -2.0
32,206 - CSW01_00165 0.59 +0.1
32,206 - CSW01_00165 0.59 -3.3
32,206 - CSW01_00165 0.59 -1.2
32,206 - CSW01_00165 0.59 -1.0
32,222 + CSW01_00165 0.61 +1.0
32,245 + CSW01_00165 0.64 -0.1
32,286 - CSW01_00165 0.68 +1.3
32,324 - CSW01_00165 0.73 -2.1
32,348 + CSW01_00165 0.75 +0.3
32,358 + CSW01_00165 0.76 -2.6
32,375 - CSW01_00165 0.78 -0.3
32,400 + CSW01_00165 0.81 +0.5
32,400 + CSW01_00165 0.81 -5.5
32,400 + CSW01_00165 0.81 -1.0
32,400 + CSW01_00165 0.81 -1.8
32,400 + CSW01_00165 0.81 -3.6
32,400 + CSW01_00165 0.81 -4.5
32,408 - CSW01_00165 0.82 -3.5
32,408 - CSW01_00165 0.82 +0.5
32,408 - CSW01_00165 0.82 +0.7
32,408 - CSW01_00165 0.82 +2.5
32,408 - CSW01_00165 0.82 -3.5
32,408 - CSW01_00165 0.82 -0.9
32,408 - CSW01_00165 0.82 -0.1
32,417 + CSW01_00165 0.83 +0.3
32,452 + CSW01_00165 0.87 +0.7
32,480 - -1.1
32,490 - -1.3
32,509 + +1.1
32,514 + -1.3
32,514 + -3.2
32,522 - +1.4
32,531 + -0.2
32,531 + -1.6
32,532 - -2.6
32,532 - +1.0
32,592 - -2.0
32,637 + +0.9
32,702 + -0.5
32,815 + CSW01_00170 0.28 +0.6
32,894 + CSW01_00170 0.41 -0.5
32,894 + CSW01_00170 0.41 -5.1
32,894 + CSW01_00170 0.41 -4.4
32,904 + CSW01_00170 0.43 +2.0
32,906 + CSW01_00170 0.43 -0.4
32,906 + CSW01_00170 0.43 +1.8
32,906 + CSW01_00170 0.43 -1.3
32,906 + CSW01_00170 0.43 -2.6
32,906 + CSW01_00170 0.43 -2.8
32,907 - CSW01_00170 0.44 -2.1
32,914 - CSW01_00170 0.45 -2.9
33,006 - CSW01_00170 0.60 -1.7
33,078 + CSW01_00170 0.72 -1.5
33,086 + CSW01_00170 0.73 -2.9
33,086 + CSW01_00170 0.73 +1.8
33,086 - CSW01_00170 0.73 -2.7
33,086 - CSW01_00170 0.73 -2.0
33,086 - CSW01_00170 0.73 -4.5
33,094 - CSW01_00170 0.75 -3.7
33,098 + CSW01_00170 0.75 +0.3
33,145 - CSW01_00170 0.83 -3.0
33,189 - -3.4
33,196 + -1.8
33,204 - -4.4
33,211 + -4.0
33,218 + -4.2
33,218 + -4.1
33,219 - +0.4
33,269 + -0.4
33,275 + +0.2
33,317 + +0.3
33,330 + -3.7
33,330 - +1.0
33,405 - CSW01_00175 0.13 -4.4
33,433 + CSW01_00175 0.16 -1.8
33,433 + CSW01_00175 0.16 -1.0
33,433 + CSW01_00175 0.16 -2.4
33,433 + CSW01_00175 0.16 +1.1
33,488 - CSW01_00175 0.21 +0.1
33,501 + CSW01_00175 0.23 -3.1
33,587 + CSW01_00175 0.31 -0.6
33,676 + CSW01_00175 0.40 -1.0
33,684 - CSW01_00175 0.41 +0.6
33,703 - CSW01_00175 0.43 +2.0
33,703 - CSW01_00175 0.43 +0.8
33,772 - CSW01_00175 0.50 +1.0
33,776 + CSW01_00175 0.51 +0.9
33,808 + CSW01_00175 0.54 -0.9
33,844 + CSW01_00175 0.57 -3.1
33,844 + CSW01_00175 0.57 -2.7
33,844 + CSW01_00175 0.57 +0.3
33,895 + CSW01_00175 0.63 +0.5
33,895 + CSW01_00175 0.63 +0.1
33,903 - CSW01_00175 0.63 -2.1
33,903 - CSW01_00175 0.63 -3.7
33,903 - CSW01_00175 0.63 +0.0
33,941 + CSW01_00175 0.67 -2.4
33,951 + CSW01_00175 0.68 +0.5
33,975 + CSW01_00175 0.71 -0.3
33,976 + CSW01_00175 0.71 -1.4
33,976 + CSW01_00175 0.71 -2.7
33,983 - CSW01_00175 0.72 +1.9
33,984 - CSW01_00175 0.72 +1.2
33,984 - CSW01_00175 0.72 +1.1
33,989 - CSW01_00175 0.72 -1.5
33,997 - CSW01_00175 0.73 +2.4
34,023 + CSW01_00175 0.76 +0.2
34,029 - CSW01_00175 0.76 +0.3
34,048 + CSW01_00175 0.78 +0.7
34,056 - CSW01_00175 0.79 -0.4
34,058 + CSW01_00175 0.79 +0.7
34,066 - CSW01_00175 0.80 -4.8
34,066 - CSW01_00175 0.80 +1.3
34,083 - CSW01_00175 0.82 +1.7
34,084 - CSW01_00175 0.82 +0.4
34,084 - CSW01_00175 0.82 +0.2
34,130 - CSW01_00175 0.86 +0.2
34,182 - +1.0

Or see this region's nucleotide sequence