Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS13150

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS13145 and BWI76_RS13150 are separated by 9 nucleotidesBWI76_RS13150 and BWI76_RS13155 are separated by 11 nucleotidesBWI76_RS13155 and BWI76_RS13160 are separated by 35 nucleotides BWI76_RS13145: BWI76_RS13145 - phenylacetic acid degradation operon negative regulatory protein PaaX, at 2,741,574 to 2,742,509 _RS13145 BWI76_RS13150: BWI76_RS13150 - carnitine operon protein CaiE, at 2,742,519 to 2,743,115 _RS13150 BWI76_RS13155: BWI76_RS13155 - hypothetical protein, at 2,743,127 to 2,743,534 _RS13155 BWI76_RS13160: BWI76_RS13160 - azoreductase, at 2,743,570 to 2,744,175 _RS13160 Position (kb) 2742 2743 2744Strain fitness (log2 ratio) -1 0 1at 2742.728 kb on + strand, within BWI76_RS13150at 2743.184 kb on - strand, within BWI76_RS13155at 2743.203 kb on - strand, within BWI76_RS13155at 2743.294 kb on + strand, within BWI76_RS13155at 2743.302 kb on - strand, within BWI76_RS13155at 2743.707 kb on + strand, within BWI76_RS13160

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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2,742,728 + BWI76_RS13150 0.35 -0.8
2,743,184 - BWI76_RS13155 0.14 -0.6
2,743,203 - BWI76_RS13155 0.19 -0.3
2,743,294 + BWI76_RS13155 0.41 +0.4
2,743,302 - BWI76_RS13155 0.43 -0.6
2,743,707 + BWI76_RS13160 0.23 -0.4

Or see this region's nucleotide sequence