Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS05770

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS05770 and BWI76_RS05775 are separated by 11 nucleotidesBWI76_RS05775 and BWI76_RS05780 overlap by 4 nucleotidesBWI76_RS05780 and BWI76_RS05785 overlap by 4 nucleotides BWI76_RS05770: BWI76_RS05770 - nucleoside triphosphatase, D5 family protein, at 1,214,563 to 1,216,896 _RS05770 BWI76_RS05775: BWI76_RS05775 - hypothetical protein, at 1,216,908 to 1,217,228 _RS05775 BWI76_RS05780: BWI76_RS05780 - hypothetical protein, at 1,217,225 to 1,217,452 _RS05780 BWI76_RS05785: BWI76_RS05785 - CI repressor, at 1,217,449 to 1,218,000 _RS05785 Position (kb) 1214 1215 1216 1217Strain fitness (log2 ratio) -1 0 1 2 3at 1213.653 kb on + strandat 1213.667 kb on + strandat 1213.669 kb on + strandat 1213.669 kb on + strandat 1213.677 kb on - strandat 1213.678 kb on - strandat 1213.687 kb on + strandat 1213.687 kb on + strandat 1213.692 kb on + strandat 1213.695 kb on - strandat 1213.695 kb on - strandat 1213.695 kb on - strandat 1213.700 kb on - strandat 1213.702 kb on + strandat 1213.702 kb on + strandat 1213.709 kb on + strandat 1213.710 kb on - strandat 1213.710 kb on - strandat 1213.710 kb on - strandat 1213.714 kb on + strandat 1213.716 kb on - strandat 1213.717 kb on - strandat 1213.777 kb on + strandat 1213.785 kb on - strandat 1213.801 kb on + strandat 1213.804 kb on - strandat 1213.883 kb on - strandat 1213.912 kb on + strandat 1213.920 kb on - strandat 1213.936 kb on + strandat 1213.944 kb on - strandat 1213.960 kb on + strandat 1213.960 kb on + strandat 1213.968 kb on - strandat 1213.974 kb on + strandat 1214.165 kb on + strandat 1214.165 kb on + strandat 1214.167 kb on + strandat 1214.167 kb on + strandat 1214.175 kb on - strandat 1214.593 kb on - strandat 1214.700 kb on + strandat 1214.735 kb on - strandat 1215.126 kb on + strand, within BWI76_RS05770at 1215.300 kb on + strand, within BWI76_RS05770at 1215.509 kb on + strand, within BWI76_RS05770at 1215.604 kb on - strand, within BWI76_RS05770at 1215.717 kb on + strand, within BWI76_RS05770at 1216.074 kb on - strand, within BWI76_RS05770at 1216.093 kb on - strand, within BWI76_RS05770at 1216.095 kb on + strand, within BWI76_RS05770at 1216.245 kb on + strand, within BWI76_RS05770at 1216.262 kb on + strand, within BWI76_RS05770at 1216.580 kb on + strand, within BWI76_RS05770at 1216.703 kb on - strandat 1217.187 kb on + strand, within BWI76_RS05775at 1217.187 kb on + strand, within BWI76_RS05775at 1217.190 kb on - strand, within BWI76_RS05775at 1217.692 kb on - strand, within BWI76_RS05785at 1217.760 kb on - strand, within BWI76_RS05785at 1217.812 kb on - strand, within BWI76_RS05785

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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1,213,653 + -0.4
1,213,667 + -0.2
1,213,669 + -0.4
1,213,669 + -0.3
1,213,677 - -0.1
1,213,678 - -0.4
1,213,687 + -0.2
1,213,687 + +0.5
1,213,692 + -0.4
1,213,695 - -0.2
1,213,695 - -0.3
1,213,695 - -0.8
1,213,700 - +0.5
1,213,702 + +0.3
1,213,702 + +0.0
1,213,709 + -0.3
1,213,710 - +1.0
1,213,710 - +0.2
1,213,710 - -0.2
1,213,714 + +1.6
1,213,716 - -0.1
1,213,717 - +0.9
1,213,777 + +1.0
1,213,785 - -0.9
1,213,801 + +1.4
1,213,804 - -0.5
1,213,883 - -0.0
1,213,912 + +0.3
1,213,920 - +0.6
1,213,936 + -0.2
1,213,944 - +1.6
1,213,960 + +0.3
1,213,960 + +0.6
1,213,968 - +2.8
1,213,974 + -0.1
1,214,165 + +0.2
1,214,165 + -0.6
1,214,167 + +0.4
1,214,167 + +0.1
1,214,175 - +0.3
1,214,593 - +1.1
1,214,700 + +0.2
1,214,735 - +0.1
1,215,126 + BWI76_RS05770 0.24 -0.5
1,215,300 + BWI76_RS05770 0.32 +0.2
1,215,509 + BWI76_RS05770 0.41 -0.8
1,215,604 - BWI76_RS05770 0.45 -0.1
1,215,717 + BWI76_RS05770 0.49 -0.4
1,216,074 - BWI76_RS05770 0.65 -0.1
1,216,093 - BWI76_RS05770 0.66 -0.2
1,216,095 + BWI76_RS05770 0.66 -0.3
1,216,245 + BWI76_RS05770 0.72 -0.1
1,216,262 + BWI76_RS05770 0.73 -0.8
1,216,580 + BWI76_RS05770 0.86 -0.8
1,216,703 - -0.1
1,217,187 + BWI76_RS05775 0.87 +0.4
1,217,187 + BWI76_RS05775 0.87 +1.0
1,217,190 - BWI76_RS05775 0.88 +1.2
1,217,692 - BWI76_RS05785 0.44 +0.5
1,217,760 - BWI76_RS05785 0.56 -0.7
1,217,812 - BWI76_RS05785 0.66 -1.0

Or see this region's nucleotide sequence