Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_26115

Experiment: Gentamicin 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_26105 and AO353_26110 are separated by 58 nucleotidesAO353_26110 and AO353_26115 are separated by 395 nucleotidesAO353_26115 and AO353_26120 are separated by 27 nucleotidesAO353_26120 and AO353_26125 overlap by 1 nucleotides AO353_26105: AO353_26105 - structural protein P5, at 5,747,006 to 5,747,455 _26105 AO353_26110: AO353_26110 - hypothetical protein, at 5,747,514 to 5,747,870 _26110 AO353_26115: AO353_26115 - hypothetical protein, at 5,748,266 to 5,748,658 _26115 AO353_26120: AO353_26120 - hypothetical protein, at 5,748,686 to 5,749,366 _26120 AO353_26125: AO353_26125 - hypothetical protein, at 5,749,366 to 5,749,677 _26125 Position (kb) 5748 5749Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5747.400 kb on + strand, within AO353_26105at 5747.400 kb on + strand, within AO353_26105at 5747.401 kb on - strand, within AO353_26105at 5747.472 kb on - strandat 5747.472 kb on - strandat 5747.486 kb on + strandat 5747.611 kb on + strand, within AO353_26110at 5747.612 kb on - strand, within AO353_26110at 5747.612 kb on - strand, within AO353_26110at 5747.612 kb on - strand, within AO353_26110at 5747.623 kb on + strand, within AO353_26110at 5747.623 kb on + strand, within AO353_26110at 5747.623 kb on + strand, within AO353_26110at 5747.624 kb on - strand, within AO353_26110at 5747.624 kb on - strand, within AO353_26110at 5747.624 kb on - strand, within AO353_26110at 5747.705 kb on - strand, within AO353_26110at 5747.765 kb on - strand, within AO353_26110at 5747.765 kb on - strand, within AO353_26110at 5747.824 kb on + strand, within AO353_26110at 5747.824 kb on + strand, within AO353_26110at 5747.824 kb on + strand, within AO353_26110at 5747.825 kb on - strand, within AO353_26110at 5747.825 kb on - strand, within AO353_26110at 5747.848 kb on - strandat 5747.848 kb on - strandat 5747.848 kb on - strandat 5748.343 kb on - strand, within AO353_26115at 5748.343 kb on - strand, within AO353_26115at 5748.343 kb on - strand, within AO353_26115at 5748.343 kb on - strand, within AO353_26115at 5748.343 kb on - strand, within AO353_26115at 5748.851 kb on + strand, within AO353_26120at 5748.851 kb on + strand, within AO353_26120at 5748.851 kb on + strand, within AO353_26120at 5748.851 kb on + strand, within AO353_26120at 5748.851 kb on + strand, within AO353_26120at 5748.851 kb on + strand, within AO353_26120at 5748.851 kb on + strand, within AO353_26120at 5748.855 kb on + strand, within AO353_26120at 5748.855 kb on + strand, within AO353_26120at 5748.855 kb on + strand, within AO353_26120at 5748.855 kb on + strand, within AO353_26120at 5748.855 kb on + strand, within AO353_26120at 5748.889 kb on - strand, within AO353_26120at 5748.892 kb on - strand, within AO353_26120at 5748.892 kb on - strand, within AO353_26120at 5748.892 kb on - strand, within AO353_26120at 5748.892 kb on - strand, within AO353_26120at 5748.892 kb on - strand, within AO353_26120at 5748.892 kb on - strandat 5748.892 kb on - strand, within AO353_26120at 5748.892 kb on - strand, within AO353_26120at 5748.892 kb on - strand, within AO353_26120at 5749.013 kb on + strand, within AO353_26120at 5749.237 kb on - strand, within AO353_26120at 5749.237 kb on - strand, within AO353_26120at 5749.237 kb on - strand, within AO353_26120at 5749.237 kb on - strand, within AO353_26120at 5749.308 kb on + strandat 5749.309 kb on - strandat 5749.360 kb on - strandat 5749.360 kb on - strandat 5749.442 kb on + strand, within AO353_26125at 5749.442 kb on + strand, within AO353_26125at 5749.500 kb on - strand, within AO353_26125at 5749.500 kb on - strand, within AO353_26125at 5749.534 kb on - strand, within AO353_26125at 5749.543 kb on + strand, within AO353_26125at 5749.586 kb on - strand, within AO353_26125

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Per-strain Table

Position Strand Gene LocusTag Fraction Gentamicin 0.006 mg/ml
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5,747,400 + AO353_26105 0.88 -0.2
5,747,400 + AO353_26105 0.88 +0.2
5,747,401 - AO353_26105 0.88 +0.6
5,747,472 - +1.0
5,747,472 - +0.0
5,747,486 + -1.0
5,747,611 + AO353_26110 0.27 -1.0
5,747,612 - AO353_26110 0.27 -2.0
5,747,612 - AO353_26110 0.27 -2.0
5,747,612 - AO353_26110 0.27 -1.0
5,747,623 + AO353_26110 0.31 +0.2
5,747,623 + AO353_26110 0.31 +0.1
5,747,623 + AO353_26110 0.31 +0.1
5,747,624 - AO353_26110 0.31 -1.4
5,747,624 - AO353_26110 0.31 +1.8
5,747,624 - AO353_26110 0.31 +0.2
5,747,705 - AO353_26110 0.54 +1.6
5,747,765 - AO353_26110 0.70 +2.2
5,747,765 - AO353_26110 0.70 +0.1
5,747,824 + AO353_26110 0.87 -2.0
5,747,824 + AO353_26110 0.87 -2.4
5,747,824 + AO353_26110 0.87 -0.8
5,747,825 - AO353_26110 0.87 +1.0
5,747,825 - AO353_26110 0.87 +0.3
5,747,848 - +0.8
5,747,848 - -0.9
5,747,848 - -0.4
5,748,343 - AO353_26115 0.20 +0.1
5,748,343 - AO353_26115 0.20 -1.0
5,748,343 - AO353_26115 0.20 +1.2
5,748,343 - AO353_26115 0.20 +1.6
5,748,343 - AO353_26115 0.20 +1.9
5,748,851 + AO353_26120 0.24 +0.3
5,748,851 + AO353_26120 0.24 +0.2
5,748,851 + AO353_26120 0.24 +0.3
5,748,851 + AO353_26120 0.24 +3.0
5,748,851 + AO353_26120 0.24 +0.2
5,748,851 + AO353_26120 0.24 -0.4
5,748,851 + AO353_26120 0.24 +2.4
5,748,855 + AO353_26120 0.25 +0.6
5,748,855 + AO353_26120 0.25 +0.6
5,748,855 + AO353_26120 0.25 +1.8
5,748,855 + AO353_26120 0.25 -0.4
5,748,855 + AO353_26120 0.25 -0.7
5,748,889 - AO353_26120 0.30 +0.0
5,748,892 - AO353_26120 0.30 -0.1
5,748,892 - AO353_26120 0.30 +1.1
5,748,892 - AO353_26120 0.30 -0.5
5,748,892 - AO353_26120 0.30 -1.0
5,748,892 - AO353_26120 0.30 +0.2
5,748,892 - -0.4
5,748,892 - AO353_26120 0.30 +0.0
5,748,892 - AO353_26120 0.30 +0.4
5,748,892 - AO353_26120 0.30 -0.3
5,749,013 + AO353_26120 0.48 -0.7
5,749,237 - AO353_26120 0.81 +0.1
5,749,237 - AO353_26120 0.81 -0.4
5,749,237 - AO353_26120 0.81 -0.1
5,749,237 - AO353_26120 0.81 +1.6
5,749,308 + -2.2
5,749,309 - +1.3
5,749,360 - +0.6
5,749,360 - +0.9
5,749,442 + AO353_26125 0.24 +1.8
5,749,442 + AO353_26125 0.24 -0.1
5,749,500 - AO353_26125 0.43 -0.3
5,749,500 - AO353_26125 0.43 +0.1
5,749,534 - AO353_26125 0.54 +1.0
5,749,543 + AO353_26125 0.57 +1.2
5,749,586 - AO353_26125 0.71 -0.2

Or see this region's nucleotide sequence