Experiment: Gentamicin 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_25835 and AO353_25840 are separated by 616 nucleotides AO353_25840 and AO353_25845 are separated by 76 nucleotides AO353_25845 and AO353_25850 are separated by 403 nucleotides
AO353_25835: AO353_25835 - 6-phosphogluconate dehydrogenase, at 5,695,016 to 5,695,996
_25835
AO353_25840: AO353_25840 - hypothetical protein, at 5,696,613 to 5,698,358
_25840
AO353_25845: AO353_25845 - GNAT family acetyltransferase, at 5,698,435 to 5,698,926
_25845
AO353_25850: AO353_25850 - peptidase C45, at 5,699,330 to 5,700,469
_25850
Position (kb) 5696
5697
5698
5699 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5695.654 kb on - strand, within AO353_25835 at 5695.654 kb on - strand, within AO353_25835 at 5695.702 kb on + strand, within AO353_25835 at 5695.703 kb on - strand, within AO353_25835 at 5695.704 kb on + strand, within AO353_25835 at 5695.704 kb on + strand, within AO353_25835 at 5695.704 kb on + strand, within AO353_25835 at 5695.704 kb on + strand, within AO353_25835 at 5695.704 kb on + strand, within AO353_25835 at 5695.704 kb on + strand, within AO353_25835 at 5695.704 kb on + strand at 5695.704 kb on + strand, within AO353_25835 at 5695.704 kb on + strand, within AO353_25835 at 5695.704 kb on + strand, within AO353_25835 at 5695.705 kb on - strand, within AO353_25835 at 5695.705 kb on - strand, within AO353_25835 at 5695.705 kb on - strand, within AO353_25835 at 5695.705 kb on - strand, within AO353_25835 at 5695.911 kb on + strand at 5695.912 kb on - strand at 5695.912 kb on - strand at 5695.912 kb on - strand at 5695.912 kb on - strand at 5696.011 kb on + strand at 5696.011 kb on + strand at 5696.012 kb on - strand at 5696.012 kb on - strand at 5696.012 kb on - strand at 5696.014 kb on + strand at 5696.014 kb on + strand at 5696.020 kb on + strand at 5696.020 kb on + strand at 5696.020 kb on + strand at 5696.021 kb on - strand at 5696.021 kb on - strand at 5696.021 kb on - strand at 5696.021 kb on - strand at 5696.021 kb on - strand at 5696.040 kb on + strand at 5696.041 kb on - strand at 5696.064 kb on + strand at 5696.084 kb on + strand at 5696.084 kb on + strand at 5696.084 kb on + strand at 5696.084 kb on + strand at 5696.085 kb on - strand at 5696.085 kb on - strand at 5696.085 kb on - strand at 5696.085 kb on - strand at 5696.085 kb on - strand at 5696.085 kb on - strand at 5696.085 kb on - strand at 5696.109 kb on + strand at 5696.109 kb on + strand at 5696.109 kb on + strand at 5696.110 kb on - strand at 5696.112 kb on - strand at 5696.112 kb on - strand at 5696.176 kb on + strand at 5696.176 kb on + strand at 5696.282 kb on + strand at 5696.283 kb on - strand at 5696.285 kb on + strand at 5696.286 kb on - strand at 5696.311 kb on + strand at 5696.312 kb on - strand at 5696.312 kb on - strand at 5696.319 kb on + strand at 5696.320 kb on - strand at 5696.458 kb on - strand at 5696.473 kb on + strand at 5696.515 kb on + strand at 5696.515 kb on + strand at 5696.515 kb on + strand at 5696.516 kb on - strand at 5696.516 kb on - strand at 5696.528 kb on - strand at 5696.530 kb on - strand at 5696.591 kb on - strand at 5696.591 kb on - strand at 5696.591 kb on - strand at 5696.594 kb on + strand at 5696.594 kb on + strand at 5696.625 kb on - strand at 5696.625 kb on - strand at 5696.636 kb on + strand at 5696.637 kb on - strand at 5696.637 kb on - strand at 5696.637 kb on - strand at 5696.768 kb on + strand at 5696.769 kb on - strand at 5696.800 kb on + strand, within AO353_25840 at 5696.801 kb on - strand, within AO353_25840 at 5696.881 kb on - strand, within AO353_25840 at 5696.888 kb on + strand, within AO353_25840 at 5696.888 kb on + strand, within AO353_25840 at 5696.889 kb on - strand, within AO353_25840 at 5696.889 kb on - strand, within AO353_25840 at 5696.889 kb on - strand, within AO353_25840 at 5696.889 kb on - strand, within AO353_25840 at 5696.892 kb on + strand, within AO353_25840 at 5696.892 kb on + strand, within AO353_25840 at 5696.892 kb on + strand, within AO353_25840 at 5696.892 kb on + strand, within AO353_25840 at 5696.892 kb on + strand, within AO353_25840 at 5696.892 kb on + strand, within AO353_25840 at 5696.892 kb on + strand, within AO353_25840 at 5696.893 kb on - strand, within AO353_25840 at 5696.893 kb on - strand, within AO353_25840 at 5696.893 kb on - strand, within AO353_25840 at 5696.893 kb on - strand, within AO353_25840 at 5696.893 kb on - strand, within AO353_25840 at 5696.893 kb on - strand, within AO353_25840 at 5696.961 kb on + strand, within AO353_25840 at 5696.961 kb on + strand at 5696.961 kb on + strand, within AO353_25840 at 5696.962 kb on - strand at 5696.962 kb on - strand, within AO353_25840 at 5696.962 kb on - strand, within AO353_25840 at 5696.974 kb on - strand, within AO353_25840 at 5696.974 kb on - strand, within AO353_25840 at 5697.025 kb on + strand, within AO353_25840 at 5697.025 kb on + strand, within AO353_25840 at 5697.026 kb on - strand, within AO353_25840 at 5697.026 kb on - strand, within AO353_25840 at 5697.054 kb on + strand, within AO353_25840 at 5697.054 kb on + strand, within AO353_25840 at 5697.054 kb on + strand, within AO353_25840 at 5697.054 kb on + strand, within AO353_25840 at 5697.054 kb on + strand, within AO353_25840 at 5697.054 kb on + strand, within AO353_25840 at 5697.055 kb on - strand, within AO353_25840 at 5697.055 kb on - strand, within AO353_25840 at 5697.220 kb on - strand, within AO353_25840 at 5697.378 kb on + strand, within AO353_25840 at 5697.379 kb on - strand, within AO353_25840 at 5697.525 kb on + strand, within AO353_25840 at 5697.525 kb on + strand, within AO353_25840 at 5697.526 kb on - strand, within AO353_25840 at 5697.526 kb on - strand, within AO353_25840 at 5697.526 kb on - strand, within AO353_25840 at 5697.526 kb on - strand, within AO353_25840 at 5697.570 kb on + strand, within AO353_25840 at 5697.570 kb on + strand, within AO353_25840 at 5697.570 kb on + strand, within AO353_25840 at 5697.570 kb on + strand, within AO353_25840 at 5697.571 kb on - strand, within AO353_25840 at 5697.660 kb on + strand, within AO353_25840 at 5697.660 kb on + strand, within AO353_25840 at 5697.660 kb on + strand, within AO353_25840 at 5697.660 kb on + strand, within AO353_25840 at 5697.792 kb on + strand, within AO353_25840 at 5697.792 kb on + strand, within AO353_25840 at 5697.792 kb on + strand, within AO353_25840 at 5697.792 kb on + strand, within AO353_25840 at 5697.793 kb on - strand, within AO353_25840 at 5697.793 kb on - strand, within AO353_25840 at 5697.799 kb on - strand, within AO353_25840 at 5697.879 kb on + strand, within AO353_25840 at 5697.879 kb on + strand, within AO353_25840 at 5697.879 kb on + strand, within AO353_25840 at 5697.879 kb on + strand, within AO353_25840 at 5697.879 kb on + strand, within AO353_25840 at 5697.880 kb on - strand, within AO353_25840 at 5697.880 kb on - strand, within AO353_25840 at 5697.889 kb on - strand, within AO353_25840 at 5697.889 kb on - strand, within AO353_25840 at 5697.889 kb on - strand, within AO353_25840 at 5697.889 kb on - strand, within AO353_25840 at 5697.906 kb on + strand, within AO353_25840 at 5697.907 kb on - strand, within AO353_25840 at 5697.907 kb on - strand, within AO353_25840 at 5697.907 kb on - strand, within AO353_25840 at 5697.943 kb on - strand, within AO353_25840 at 5697.975 kb on + strand, within AO353_25840 at 5697.975 kb on + strand, within AO353_25840 at 5698.034 kb on + strand, within AO353_25840 at 5698.063 kb on - strand, within AO353_25840 at 5698.146 kb on + strand, within AO353_25840 at 5698.147 kb on - strand, within AO353_25840 at 5698.147 kb on - strand, within AO353_25840 at 5698.272 kb on + strand at 5698.273 kb on - strand at 5698.356 kb on + strand at 5698.357 kb on - strand at 5698.437 kb on - strand at 5698.510 kb on - strand, within AO353_25845 at 5698.511 kb on + strand, within AO353_25845 at 5698.511 kb on + strand, within AO353_25845 at 5698.511 kb on + strand, within AO353_25845 at 5698.511 kb on + strand, within AO353_25845 at 5698.511 kb on + strand, within AO353_25845 at 5698.512 kb on - strand, within AO353_25845 at 5698.877 kb on - strand at 5698.889 kb on + strand at 5698.889 kb on + strand at 5698.890 kb on - strand at 5698.999 kb on + strand at 5699.000 kb on - strand at 5699.069 kb on - strand at 5699.137 kb on - strand at 5699.146 kb on - strand at 5699.146 kb on - strand at 5699.147 kb on + strand at 5699.148 kb on - strand at 5699.183 kb on + strand at 5699.184 kb on - strand at 5699.246 kb on + strand at 5699.247 kb on - strand at 5699.291 kb on + strand at 5699.291 kb on + strand at 5699.291 kb on + strand at 5699.291 kb on + strand at 5699.291 kb on + strand at 5699.291 kb on + strand at 5699.291 kb on + strand at 5699.291 kb on + strand at 5699.291 kb on + strand at 5699.292 kb on - strand at 5699.292 kb on - strand at 5699.292 kb on - strand at 5699.292 kb on - strand at 5699.292 kb on - strand at 5699.292 kb on - strand at 5699.292 kb on - strand at 5699.292 kb on - strand at 5699.292 kb on - strand at 5699.344 kb on + strand at 5699.344 kb on + strand at 5699.344 kb on + strand at 5699.344 kb on + strand at 5699.344 kb on + strand at 5699.344 kb on + strand at 5699.344 kb on + strand at 5699.344 kb on + strand at 5699.344 kb on + strand at 5699.345 kb on - strand at 5699.345 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Gentamicin 0.006 mg/ml remove 5,695,654 - AO353_25835 0.65 +1.7 5,695,654 - AO353_25835 0.65 +0.3 5,695,702 + AO353_25835 0.70 +0.7 5,695,703 - AO353_25835 0.70 +1.2 5,695,704 + AO353_25835 0.70 +0.2 5,695,704 + AO353_25835 0.70 -0.0 5,695,704 + AO353_25835 0.70 -0.4 5,695,704 + AO353_25835 0.70 -2.9 5,695,704 + AO353_25835 0.70 +0.6 5,695,704 + AO353_25835 0.70 +0.6 5,695,704 + +0.6 5,695,704 + AO353_25835 0.70 -0.5 5,695,704 + AO353_25835 0.70 +1.6 5,695,704 + AO353_25835 0.70 -0.2 5,695,705 - AO353_25835 0.70 +0.5 5,695,705 - AO353_25835 0.70 +0.3 5,695,705 - AO353_25835 0.70 -0.7 5,695,705 - AO353_25835 0.70 -0.2 5,695,911 + +0.6 5,695,912 - +0.2 5,695,912 - +1.3 5,695,912 - -1.0 5,695,912 - +0.3 5,696,011 + +1.2 5,696,011 + +1.8 5,696,012 - -0.4 5,696,012 - +0.4 5,696,012 - +1.2 5,696,014 + +0.1 5,696,014 + -0.0 5,696,020 + +1.0 5,696,020 + +0.3 5,696,020 + +1.9 5,696,021 - -0.0 5,696,021 - +1.6 5,696,021 - +0.2 5,696,021 - -0.2 5,696,021 - +0.3 5,696,040 + -1.3 5,696,041 - -0.0 5,696,064 + +0.6 5,696,084 + -0.4 5,696,084 + -1.0 5,696,084 + +0.2 5,696,084 + -0.3 5,696,085 - +0.2 5,696,085 - +0.8 5,696,085 - -1.0 5,696,085 - -0.4 5,696,085 - -0.0 5,696,085 - +1.6 5,696,085 - -1.2 5,696,109 + -1.4 5,696,109 + +0.1 5,696,109 + -0.0 5,696,110 - -0.4 5,696,112 - +0.2 5,696,112 - -0.6 5,696,176 + -0.8 5,696,176 + -1.4 5,696,282 + -0.7 5,696,283 - -0.9 5,696,285 + +0.2 5,696,286 - -0.6 5,696,311 + +0.2 5,696,312 - +0.6 5,696,312 - -0.4 5,696,319 + -1.4 5,696,320 - -0.7 5,696,458 - +0.2 5,696,473 + +0.4 5,696,515 + +0.8 5,696,515 + +0.6 5,696,515 + -0.6 5,696,516 - -1.1 5,696,516 - -3.5 5,696,528 - +1.1 5,696,530 - +0.2 5,696,591 - +1.0 5,696,591 - -1.0 5,696,591 - +1.6 5,696,594 + +0.6 5,696,594 + +1.4 5,696,625 - -0.9 5,696,625 - -1.2 5,696,636 + -0.0 5,696,637 - +0.2 5,696,637 - +0.4 5,696,637 - +0.2 5,696,768 + -0.2 5,696,769 - -0.0 5,696,800 + AO353_25840 0.11 +1.6 5,696,801 - AO353_25840 0.11 +0.6 5,696,881 - AO353_25840 0.15 +0.2 5,696,888 + AO353_25840 0.16 +1.2 5,696,888 + AO353_25840 0.16 +0.2 5,696,889 - AO353_25840 0.16 +0.3 5,696,889 - AO353_25840 0.16 -0.2 5,696,889 - AO353_25840 0.16 -0.8 5,696,889 - AO353_25840 0.16 +0.2 5,696,892 + AO353_25840 0.16 -0.1 5,696,892 + AO353_25840 0.16 -0.4 5,696,892 + AO353_25840 0.16 -0.2 5,696,892 + AO353_25840 0.16 -2.1 5,696,892 + AO353_25840 0.16 +0.6 5,696,892 + AO353_25840 0.16 -0.6 5,696,892 + AO353_25840 0.16 +0.2 5,696,893 - AO353_25840 0.16 -0.2 5,696,893 - AO353_25840 0.16 -1.2 5,696,893 - AO353_25840 0.16 +0.2 5,696,893 - AO353_25840 0.16 -0.1 5,696,893 - AO353_25840 0.16 +0.7 5,696,893 - AO353_25840 0.16 +0.6 5,696,961 + AO353_25840 0.20 +0.1 5,696,961 + +0.2 5,696,961 + AO353_25840 0.20 -0.4 5,696,962 - +1.0 5,696,962 - AO353_25840 0.20 +0.1 5,696,962 - AO353_25840 0.20 -2.5 5,696,974 - AO353_25840 0.21 +0.3 5,696,974 - AO353_25840 0.21 -2.1 5,697,025 + AO353_25840 0.24 +0.4 5,697,025 + AO353_25840 0.24 -0.5 5,697,026 - AO353_25840 0.24 -1.0 5,697,026 - AO353_25840 0.24 -0.4 5,697,054 + AO353_25840 0.25 +1.3 5,697,054 + AO353_25840 0.25 -0.9 5,697,054 + AO353_25840 0.25 -1.4 5,697,054 + AO353_25840 0.25 +0.8 5,697,054 + AO353_25840 0.25 +0.8 5,697,054 + AO353_25840 0.25 +0.4 5,697,055 - AO353_25840 0.25 +1.0 5,697,055 - AO353_25840 0.25 +0.2 5,697,220 - AO353_25840 0.35 -0.4 5,697,378 + AO353_25840 0.44 -0.4 5,697,379 - AO353_25840 0.44 -1.7 5,697,525 + AO353_25840 0.52 -0.1 5,697,525 + AO353_25840 0.52 -1.0 5,697,526 - AO353_25840 0.52 -0.1 5,697,526 - AO353_25840 0.52 +0.8 5,697,526 - AO353_25840 0.52 +0.2 5,697,526 - AO353_25840 0.52 +0.9 5,697,570 + AO353_25840 0.55 -1.0 5,697,570 + AO353_25840 0.55 +0.8 5,697,570 + AO353_25840 0.55 +0.8 5,697,570 + AO353_25840 0.55 -0.0 5,697,571 - AO353_25840 0.55 -1.0 5,697,660 + AO353_25840 0.60 +0.9 5,697,660 + AO353_25840 0.60 -0.7 5,697,660 + AO353_25840 0.60 +0.3 5,697,660 + AO353_25840 0.60 -0.0 5,697,792 + AO353_25840 0.68 -0.2 5,697,792 + AO353_25840 0.68 -0.3 5,697,792 + AO353_25840 0.68 -0.4 5,697,792 + AO353_25840 0.68 -0.7 5,697,793 - AO353_25840 0.68 -0.6 5,697,793 - AO353_25840 0.68 -1.2 5,697,799 - AO353_25840 0.68 -0.8 5,697,879 + AO353_25840 0.73 +0.6 5,697,879 + AO353_25840 0.73 -0.6 5,697,879 + AO353_25840 0.73 -0.2 5,697,879 + AO353_25840 0.73 +1.0 5,697,879 + AO353_25840 0.73 +0.1 5,697,880 - AO353_25840 0.73 +0.6 5,697,880 - AO353_25840 0.73 -1.3 5,697,889 - AO353_25840 0.73 -1.0 5,697,889 - AO353_25840 0.73 -0.8 5,697,889 - AO353_25840 0.73 +1.6 5,697,889 - AO353_25840 0.73 +1.2 5,697,906 + AO353_25840 0.74 -0.4 5,697,907 - AO353_25840 0.74 +0.6 5,697,907 - AO353_25840 0.74 -1.8 5,697,907 - AO353_25840 0.74 -1.0 5,697,943 - AO353_25840 0.76 +0.2 5,697,975 + AO353_25840 0.78 +0.6 5,697,975 + AO353_25840 0.78 -0.9 5,698,034 + AO353_25840 0.81 +0.2 5,698,063 - AO353_25840 0.83 -1.8 5,698,146 + AO353_25840 0.88 +1.2 5,698,147 - AO353_25840 0.88 -0.5 5,698,147 - AO353_25840 0.88 -1.1 5,698,272 + +1.6 5,698,273 - +0.3 5,698,356 + +0.3 5,698,357 - +0.1 5,698,437 - +1.2 5,698,510 - AO353_25845 0.15 +0.8 5,698,511 + AO353_25845 0.15 +1.6 5,698,511 + AO353_25845 0.15 -0.4 5,698,511 + AO353_25845 0.15 +1.4 5,698,511 + AO353_25845 0.15 +0.9 5,698,511 + AO353_25845 0.15 -0.7 5,698,512 - AO353_25845 0.16 -2.0 5,698,877 - +1.2 5,698,889 + -1.0 5,698,889 + +1.1 5,698,890 - +0.9 5,698,999 + -0.8 5,699,000 - +1.6 5,699,069 - -0.4 5,699,137 - -0.3 5,699,146 - +3.4 5,699,146 - -0.3 5,699,147 + +0.8 5,699,148 - -0.8 5,699,183 + -0.3 5,699,184 - +1.3 5,699,246 + +0.3 5,699,247 - +2.6 5,699,291 + -0.2 5,699,291 + +1.2 5,699,291 + -1.0 5,699,291 + +0.1 5,699,291 + +0.6 5,699,291 + +0.7 5,699,291 + -0.7 5,699,291 + +1.1 5,699,291 + +0.6 5,699,292 - +2.4 5,699,292 - -0.0 5,699,292 - -0.5 5,699,292 - +0.7 5,699,292 - +1.6 5,699,292 - -0.0 5,699,292 - -0.4 5,699,292 - +1.2 5,699,292 - +0.2 5,699,344 + -1.4 5,699,344 + +1.9 5,699,344 + +0.6 5,699,344 + -1.8 5,699,344 + +2.0 5,699,344 + -0.5 5,699,344 + +0.3 5,699,344 + +0.3 5,699,344 + +1.6 5,699,345 - -0.4 5,699,345 - -0.0
Or see this region's nucleotide sequence