Experiment: Gentamicin 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_22695 and AO353_22700 are separated by 47 nucleotides AO353_22700 and AO353_22705 overlap by 1 nucleotides AO353_22705 and AO353_22710 are separated by 7 nucleotides
AO353_22695: AO353_22695 - LysR family transcriptional regulator, at 4,969,703 to 4,970,620
_22695
AO353_22700: AO353_22700 - LexA family transcriptional regulator, at 4,970,668 to 4,971,285
_22700
AO353_22705: AO353_22705 - CDP-6-deoxy-delta-3,4-glucoseen reductase, at 4,971,285 to 4,971,902
_22705
AO353_22710: AO353_22710 - DNA repair nucleotidyltransferase, at 4,971,910 to 4,973,325
_22710
Position (kb)
4971
4972 Strain fitness (log2 ratio)
-1
0
1
2 at 4970.378 kb on + strand, within AO353_22695 at 4970.379 kb on - strand, within AO353_22695 at 4970.379 kb on - strand, within AO353_22695 at 4970.379 kb on - strand, within AO353_22695 at 4970.490 kb on - strand, within AO353_22695 at 4971.019 kb on + strand, within AO353_22700 at 4971.208 kb on + strand, within AO353_22700 at 4971.209 kb on - strand, within AO353_22700 at 4971.209 kb on - strand, within AO353_22700 at 4971.543 kb on + strand, within AO353_22705 at 4971.543 kb on + strand, within AO353_22705 at 4971.543 kb on + strand, within AO353_22705 at 4971.543 kb on + strand, within AO353_22705 at 4971.543 kb on + strand, within AO353_22705 at 4971.543 kb on + strand, within AO353_22705 at 4971.543 kb on + strand, within AO353_22705 at 4971.544 kb on - strand, within AO353_22705 at 4971.779 kb on + strand, within AO353_22705 at 4971.835 kb on + strand, within AO353_22705 at 4971.924 kb on + strand at 4971.924 kb on + strand at 4971.925 kb on - strand at 4971.925 kb on - strand at 4971.925 kb on - strand at 4972.123 kb on + strand, within AO353_22710 at 4972.123 kb on + strand, within AO353_22710 at 4972.123 kb on + strand, within AO353_22710 at 4972.367 kb on - strand at 4972.367 kb on - strand, within AO353_22710 at 4972.367 kb on - strand, within AO353_22710 at 4972.367 kb on - strand, within AO353_22710 at 4972.401 kb on - strand, within AO353_22710 at 4972.600 kb on + strand, within AO353_22710 at 4972.601 kb on - strand, within AO353_22710 at 4972.601 kb on - strand, within AO353_22710
Per-strain Table
Position Strand Gene LocusTag Fraction Gentamicin 0.006 mg/ml remove 4,970,378 + AO353_22695 0.74 +0.9 4,970,379 - AO353_22695 0.74 -0.3 4,970,379 - AO353_22695 0.74 +0.4 4,970,379 - AO353_22695 0.74 +0.7 4,970,490 - AO353_22695 0.86 -0.3 4,971,019 + AO353_22700 0.57 +0.4 4,971,208 + AO353_22700 0.87 -1.6 4,971,209 - AO353_22700 0.88 -1.1 4,971,209 - AO353_22700 0.88 -0.1 4,971,543 + AO353_22705 0.42 +0.5 4,971,543 + AO353_22705 0.42 -0.3 4,971,543 + AO353_22705 0.42 +2.3 4,971,543 + AO353_22705 0.42 +2.4 4,971,543 + AO353_22705 0.42 +0.7 4,971,543 + AO353_22705 0.42 +1.1 4,971,543 + AO353_22705 0.42 -0.7 4,971,544 - AO353_22705 0.42 +1.0 4,971,779 + AO353_22705 0.80 +1.0 4,971,835 + AO353_22705 0.89 +0.4 4,971,924 + +1.1 4,971,924 + +0.1 4,971,925 - -0.8 4,971,925 - -0.5 4,971,925 - +0.2 4,972,123 + AO353_22710 0.15 +0.2 4,972,123 + AO353_22710 0.15 -0.7 4,972,123 + AO353_22710 0.15 -0.9 4,972,367 - +1.5 4,972,367 - AO353_22710 0.32 +0.4 4,972,367 - AO353_22710 0.32 -0.8 4,972,367 - AO353_22710 0.32 +2.3 4,972,401 - AO353_22710 0.35 -1.6 4,972,600 + AO353_22710 0.49 +0.2 4,972,601 - AO353_22710 0.49 +2.5 4,972,601 - AO353_22710 0.49 -0.3
Or see this region's nucleotide sequence