Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_04580

Experiment: Gentamicin 0.006 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_04575 and AO353_04580 are separated by 87 nucleotidesAO353_04580 and AO353_04585 are separated by 39 nucleotidesAO353_04585 and AO353_04590 are separated by 113 nucleotides AO353_04575: AO353_04575 - glutathione S-transferase, at 988,369 to 989,304 _04575 AO353_04580: AO353_04580 - GIY-YIG nuclease, at 989,392 to 989,712 _04580 AO353_04585: AO353_04585 - ketosteroid isomerase, at 989,752 to 990,222 _04585 AO353_04590: AO353_04590 - MFS transporter, at 990,336 to 991,652 _04590 Position (kb) 989 990Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 988.483 kb on + strand, within AO353_04575at 988.483 kb on + strand, within AO353_04575at 988.483 kb on + strand, within AO353_04575at 988.484 kb on - strand, within AO353_04575at 988.502 kb on + strand, within AO353_04575at 988.503 kb on - strand, within AO353_04575at 988.522 kb on + strand, within AO353_04575at 988.522 kb on + strand, within AO353_04575at 988.522 kb on + strand, within AO353_04575at 988.522 kb on + strand, within AO353_04575at 988.522 kb on + strand, within AO353_04575at 988.522 kb on + strand, within AO353_04575at 988.522 kb on + strand, within AO353_04575at 988.522 kb on + strand, within AO353_04575at 988.523 kb on - strand, within AO353_04575at 988.523 kb on - strand, within AO353_04575at 988.523 kb on - strand, within AO353_04575at 988.523 kb on - strand, within AO353_04575at 988.523 kb on - strand, within AO353_04575at 988.523 kb on - strand, within AO353_04575at 988.523 kb on - strand, within AO353_04575at 988.784 kb on + strand, within AO353_04575at 988.784 kb on + strand, within AO353_04575at 988.784 kb on + strand, within AO353_04575at 988.784 kb on + strand, within AO353_04575at 988.785 kb on - strand, within AO353_04575at 988.785 kb on - strand, within AO353_04575at 988.785 kb on - strand, within AO353_04575at 988.785 kb on - strand, within AO353_04575at 989.117 kb on + strand, within AO353_04575at 989.117 kb on + strand, within AO353_04575at 989.117 kb on + strand, within AO353_04575at 989.117 kb on + strand, within AO353_04575at 989.117 kb on + strand, within AO353_04575at 989.117 kb on + strand, within AO353_04575at 989.117 kb on + strand, within AO353_04575at 989.118 kb on - strand, within AO353_04575at 989.118 kb on - strand, within AO353_04575at 989.118 kb on - strand, within AO353_04575at 989.118 kb on - strand, within AO353_04575at 989.118 kb on - strand, within AO353_04575at 989.325 kb on + strandat 989.325 kb on + strandat 989.325 kb on + strandat 989.325 kb on + strandat 989.325 kb on + strandat 989.325 kb on + strandat 989.325 kb on + strandat 989.325 kb on + strandat 989.325 kb on + strandat 989.325 kb on + strandat 989.325 kb on + strandat 989.325 kb on + strandat 989.325 kb on + strandat 989.340 kb on + strandat 989.363 kb on + strandat 989.386 kb on + strandat 989.386 kb on + strandat 989.386 kb on + strandat 989.386 kb on + strandat 989.386 kb on + strandat 989.386 kb on + strandat 989.386 kb on + strandat 989.386 kb on + strandat 989.386 kb on + strandat 989.387 kb on - strandat 989.387 kb on - strandat 989.387 kb on - strandat 989.387 kb on - strandat 989.387 kb on - strandat 989.387 kb on - strandat 989.402 kb on - strandat 989.491 kb on - strand, within AO353_04580at 989.510 kb on + strand, within AO353_04580at 989.510 kb on + strand, within AO353_04580at 989.510 kb on + strand, within AO353_04580at 989.510 kb on + strand, within AO353_04580at 989.510 kb on + strand, within AO353_04580at 989.511 kb on - strand, within AO353_04580at 989.556 kb on + strand, within AO353_04580at 989.609 kb on + strand, within AO353_04580at 989.609 kb on + strand, within AO353_04580at 989.610 kb on - strand, within AO353_04580at 989.639 kb on + strand, within AO353_04580at 989.639 kb on + strand, within AO353_04580at 989.639 kb on + strand, within AO353_04580at 989.730 kb on + strandat 989.731 kb on - strandat 989.750 kb on + strandat 989.751 kb on - strandat 989.975 kb on + strand, within AO353_04585at 989.975 kb on + strand, within AO353_04585at 989.975 kb on + strand, within AO353_04585at 989.975 kb on + strand, within AO353_04585at 989.975 kb on + strand, within AO353_04585at 989.975 kb on + strand, within AO353_04585at 989.975 kb on + strand, within AO353_04585at 989.976 kb on - strand, within AO353_04585at 989.976 kb on - strand, within AO353_04585at 989.976 kb on - strand, within AO353_04585at 989.976 kb on - strand, within AO353_04585at 990.141 kb on - strand, within AO353_04585at 990.185 kb on + strandat 990.185 kb on + strandat 990.185 kb on + strandat 990.185 kb on + strandat 990.185 kb on + strandat 990.185 kb on + strandat 990.185 kb on + strandat 990.186 kb on - strandat 990.186 kb on - strandat 990.186 kb on - strandat 990.186 kb on - strandat 990.273 kb on + strandat 990.274 kb on - strandat 990.297 kb on - strandat 990.297 kb on - strandat 990.318 kb on - strandat 990.360 kb on + strandat 990.360 kb on + strandat 990.360 kb on + strandat 990.360 kb on + strandat 990.360 kb on + strandat 990.360 kb on + strandat 990.361 kb on - strandat 990.361 kb on - strandat 990.361 kb on - strandat 990.361 kb on - strandat 990.361 kb on - strandat 990.361 kb on - strandat 990.361 kb on - strandat 990.364 kb on + strandat 990.413 kb on + strandat 990.414 kb on - strandat 990.414 kb on - strandat 990.462 kb on + strandat 990.462 kb on + strandat 990.462 kb on + strandat 990.462 kb on + strandat 990.462 kb on + strandat 990.462 kb on + strandat 990.462 kb on + strandat 990.463 kb on - strandat 990.463 kb on - strandat 990.500 kb on + strand, within AO353_04590at 990.500 kb on + strand, within AO353_04590at 990.500 kb on + strand, within AO353_04590at 990.500 kb on + strand, within AO353_04590at 990.500 kb on + strand, within AO353_04590at 990.500 kb on + strand, within AO353_04590at 990.500 kb on + strand, within AO353_04590at 990.500 kb on + strand, within AO353_04590at 990.500 kb on + strand, within AO353_04590at 990.500 kb on + strand, within AO353_04590at 990.500 kb on + strand, within AO353_04590at 990.500 kb on + strand, within AO353_04590at 990.500 kb on + strand, within AO353_04590at 990.500 kb on + strand, within AO353_04590at 990.501 kb on - strand, within AO353_04590at 990.501 kb on - strand, within AO353_04590at 990.501 kb on - strand, within AO353_04590at 990.501 kb on - strand, within AO353_04590at 990.501 kb on - strand, within AO353_04590at 990.501 kb on - strand, within AO353_04590at 990.501 kb on - strand, within AO353_04590at 990.501 kb on - strand, within AO353_04590at 990.501 kb on - strand, within AO353_04590at 990.501 kb on - strand, within AO353_04590at 990.501 kb on - strand, within AO353_04590at 990.501 kb on - strand, within AO353_04590at 990.503 kb on - strand, within AO353_04590at 990.593 kb on + strand, within AO353_04590at 990.652 kb on + strand, within AO353_04590at 990.653 kb on - strand, within AO353_04590

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Gentamicin 0.006 mg/ml
remove
988,483 + AO353_04575 0.12 +1.1
988,483 + AO353_04575 0.12 +1.7
988,483 + AO353_04575 0.12 +0.8
988,484 - AO353_04575 0.12 +0.7
988,502 + AO353_04575 0.14 -0.0
988,503 - AO353_04575 0.14 -1.8
988,522 + AO353_04575 0.16 +1.9
988,522 + AO353_04575 0.16 +0.8
988,522 + AO353_04575 0.16 -1.5
988,522 + AO353_04575 0.16 +0.3
988,522 + AO353_04575 0.16 -1.5
988,522 + AO353_04575 0.16 -1.3
988,522 + AO353_04575 0.16 -0.2
988,522 + AO353_04575 0.16 +0.7
988,523 - AO353_04575 0.16 -0.3
988,523 - AO353_04575 0.16 -0.4
988,523 - AO353_04575 0.16 -0.6
988,523 - AO353_04575 0.16 +1.7
988,523 - AO353_04575 0.16 +0.4
988,523 - AO353_04575 0.16 -2.5
988,523 - AO353_04575 0.16 -0.2
988,784 + AO353_04575 0.44 +1.1
988,784 + AO353_04575 0.44 +1.0
988,784 + AO353_04575 0.44 +1.7
988,784 + AO353_04575 0.44 +0.5
988,785 - AO353_04575 0.44 +0.7
988,785 - AO353_04575 0.44 -1.5
988,785 - AO353_04575 0.44 +2.1
988,785 - AO353_04575 0.44 +0.4
989,117 + AO353_04575 0.80 -0.9
989,117 + AO353_04575 0.80 +1.1
989,117 + AO353_04575 0.80 +0.7
989,117 + AO353_04575 0.80 -1.3
989,117 + AO353_04575 0.80 +1.1
989,117 + AO353_04575 0.80 -0.3
989,117 + AO353_04575 0.80 +0.6
989,118 - AO353_04575 0.80 -0.9
989,118 - AO353_04575 0.80 +0.7
989,118 - AO353_04575 0.80 +1.1
989,118 - AO353_04575 0.80 -0.9
989,118 - AO353_04575 0.80 -0.9
989,325 + -0.5
989,325 + -0.8
989,325 + +1.3
989,325 + +1.1
989,325 + -0.7
989,325 + +0.1
989,325 + -1.6
989,325 + +0.4
989,325 + -0.2
989,325 + -0.9
989,325 + +0.8
989,325 + -0.6
989,325 + +1.7
989,340 + +1.7
989,363 + -0.5
989,386 + +0.3
989,386 + -0.5
989,386 + +0.4
989,386 + +0.0
989,386 + +2.7
989,386 + +0.9
989,386 + -0.3
989,386 + -0.5
989,386 + -0.5
989,387 - -0.6
989,387 - +0.9
989,387 - +0.7
989,387 - +1.9
989,387 - +0.8
989,387 - +0.6
989,402 - -0.9
989,491 - AO353_04580 0.31 +2.1
989,510 + AO353_04580 0.37 +1.7
989,510 + AO353_04580 0.37 +0.5
989,510 + AO353_04580 0.37 -0.5
989,510 + AO353_04580 0.37 +0.4
989,510 + AO353_04580 0.37 +0.1
989,511 - AO353_04580 0.37 +2.1
989,556 + AO353_04580 0.51 +2.1
989,609 + AO353_04580 0.68 +0.5
989,609 + AO353_04580 0.68 +0.7
989,610 - AO353_04580 0.68 +1.5
989,639 + AO353_04580 0.77 -0.7
989,639 + AO353_04580 0.77 +0.1
989,639 + AO353_04580 0.77 +0.6
989,730 + -1.2
989,731 - +1.1
989,750 + +0.1
989,751 - -1.0
989,975 + AO353_04585 0.47 -0.5
989,975 + AO353_04585 0.47 -0.6
989,975 + AO353_04585 0.47 +0.1
989,975 + AO353_04585 0.47 +1.1
989,975 + AO353_04585 0.47 +1.1
989,975 + AO353_04585 0.47 +0.4
989,975 + AO353_04585 0.47 +0.3
989,976 - AO353_04585 0.48 +0.3
989,976 - AO353_04585 0.48 +0.4
989,976 - AO353_04585 0.48 +0.1
989,976 - AO353_04585 0.48 -0.0
990,141 - AO353_04585 0.83 -1.1
990,185 + -0.6
990,185 + -1.2
990,185 + -0.1
990,185 + -0.2
990,185 + -1.4
990,185 + +0.1
990,185 + +1.7
990,186 - -0.0
990,186 - +0.5
990,186 - +0.4
990,186 - -0.5
990,273 + +0.5
990,274 - +1.1
990,297 - -0.3
990,297 - +1.5
990,318 - -0.2
990,360 + +0.2
990,360 + +0.1
990,360 + -2.6
990,360 + -2.6
990,360 + -0.6
990,360 + +0.9
990,361 - -0.9
990,361 - +0.7
990,361 - +0.1
990,361 - +0.5
990,361 - -0.5
990,361 - +2.5
990,361 - +1.4
990,364 + +0.6
990,413 + +0.5
990,414 - +0.1
990,414 - -0.5
990,462 + -1.0
990,462 + +1.1
990,462 + -1.9
990,462 + -2.9
990,462 + -0.2
990,462 + +0.1
990,462 + +1.1
990,463 - -1.9
990,463 - -0.7
990,500 + AO353_04590 0.12 -0.5
990,500 + AO353_04590 0.12 +0.8
990,500 + AO353_04590 0.12 +0.3
990,500 + AO353_04590 0.12 +0.1
990,500 + AO353_04590 0.12 -0.2
990,500 + AO353_04590 0.12 +0.1
990,500 + AO353_04590 0.12 -0.1
990,500 + AO353_04590 0.12 +0.4
990,500 + AO353_04590 0.12 -0.3
990,500 + AO353_04590 0.12 -0.7
990,500 + AO353_04590 0.12 +0.7
990,500 + AO353_04590 0.12 +0.1
990,500 + AO353_04590 0.12 -1.5
990,500 + AO353_04590 0.12 +0.9
990,501 - AO353_04590 0.13 +0.4
990,501 - AO353_04590 0.13 +1.4
990,501 - AO353_04590 0.13 -0.7
990,501 - AO353_04590 0.13 +1.1
990,501 - AO353_04590 0.13 +1.1
990,501 - AO353_04590 0.13 +0.6
990,501 - AO353_04590 0.13 -1.3
990,501 - AO353_04590 0.13 +0.8
990,501 - AO353_04590 0.13 -0.1
990,501 - AO353_04590 0.13 +0.8
990,501 - AO353_04590 0.13 +0.5
990,501 - AO353_04590 0.13 -0.5
990,503 - AO353_04590 0.13 +0.5
990,593 + AO353_04590 0.20 +2.4
990,652 + AO353_04590 0.24 -0.7
990,653 - AO353_04590 0.24 +0.8

Or see this region's nucleotide sequence