Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_04185

Experiment: Gentamicin 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_04180 and AO353_04185 are separated by 95 nucleotidesAO353_04185 and AO353_04190 are separated by 336 nucleotides AO353_04180: AO353_04180 - glycerol kinase, at 895,683 to 897,188 _04180 AO353_04185: AO353_04185 - DeoR family transcriptional regulator, at 897,284 to 898,039 _04185 AO353_04190: AO353_04190 - glycerol-3-phosphate dehydrogenase, at 898,376 to 899,914 _04190 Position (kb) 897 898 899Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 896.364 kb on + strand, within AO353_04180at 896.364 kb on + strand, within AO353_04180at 896.364 kb on + strand, within AO353_04180at 896.364 kb on + strand, within AO353_04180at 896.365 kb on - strand, within AO353_04180at 896.469 kb on + strand, within AO353_04180at 896.470 kb on - strand, within AO353_04180at 896.470 kb on - strand, within AO353_04180at 896.517 kb on - strand, within AO353_04180at 896.517 kb on - strand, within AO353_04180at 896.574 kb on + strand, within AO353_04180at 896.575 kb on - strand, within AO353_04180at 896.575 kb on - strand, within AO353_04180at 896.667 kb on + strand, within AO353_04180at 896.667 kb on + strand, within AO353_04180at 896.667 kb on + strand, within AO353_04180at 896.668 kb on - strand, within AO353_04180at 896.668 kb on - strand, within AO353_04180at 896.668 kb on - strand, within AO353_04180at 896.668 kb on - strand, within AO353_04180at 896.703 kb on + strand, within AO353_04180at 896.703 kb on + strand, within AO353_04180at 896.703 kb on + strand, within AO353_04180at 896.703 kb on + strand, within AO353_04180at 896.704 kb on - strand, within AO353_04180at 896.704 kb on - strand, within AO353_04180at 896.789 kb on - strand, within AO353_04180at 896.789 kb on - strand, within AO353_04180at 896.848 kb on + strand, within AO353_04180at 896.848 kb on + strand, within AO353_04180at 896.849 kb on - strand, within AO353_04180at 896.899 kb on + strand, within AO353_04180at 896.900 kb on - strand, within AO353_04180at 897.009 kb on + strand, within AO353_04180at 897.009 kb on + strandat 897.009 kb on + strand, within AO353_04180at 897.123 kb on + strandat 897.123 kb on + strandat 897.195 kb on + strandat 897.196 kb on - strandat 897.196 kb on - strandat 897.212 kb on + strandat 897.212 kb on + strandat 897.212 kb on + strandat 897.212 kb on + strandat 897.213 kb on - strandat 897.213 kb on - strandat 897.213 kb on - strandat 897.213 kb on - strandat 897.216 kb on + strandat 897.216 kb on + strandat 897.216 kb on + strandat 897.216 kb on + strandat 897.217 kb on - strandat 897.217 kb on - strandat 897.217 kb on - strandat 897.217 kb on - strandat 897.217 kb on - strandat 897.217 kb on - strandat 897.217 kb on - strandat 897.217 kb on - strandat 897.224 kb on - strandat 897.238 kb on + strandat 897.284 kb on - strandat 897.284 kb on - strandat 897.338 kb on + strandat 897.366 kb on + strand, within AO353_04185at 897.366 kb on + strand, within AO353_04185at 897.366 kb on + strand, within AO353_04185at 897.366 kb on + strand, within AO353_04185at 897.366 kb on + strand, within AO353_04185at 897.366 kb on + strand, within AO353_04185at 897.366 kb on + strand, within AO353_04185at 897.367 kb on - strand, within AO353_04185at 897.367 kb on - strand, within AO353_04185at 897.367 kb on - strand, within AO353_04185at 897.367 kb on - strand, within AO353_04185at 897.376 kb on + strand, within AO353_04185at 897.376 kb on + strand, within AO353_04185at 897.377 kb on - strand, within AO353_04185at 897.377 kb on - strand, within AO353_04185at 897.377 kb on - strand, within AO353_04185at 897.400 kb on + strand, within AO353_04185at 897.401 kb on - strand, within AO353_04185at 897.455 kb on + strand, within AO353_04185at 897.482 kb on + strand, within AO353_04185at 897.482 kb on + strand, within AO353_04185at 897.647 kb on - strand, within AO353_04185at 897.846 kb on + strand, within AO353_04185at 897.847 kb on - strand, within AO353_04185at 897.847 kb on - strand, within AO353_04185at 898.045 kb on + strandat 898.045 kb on + strandat 898.045 kb on + strandat 898.045 kb on + strandat 898.045 kb on + strandat 898.045 kb on + strandat 898.045 kb on + strandat 898.045 kb on + strandat 898.045 kb on + strandat 898.045 kb on + strandat 898.045 kb on + strandat 898.046 kb on - strandat 898.046 kb on - strandat 898.046 kb on - strandat 898.046 kb on - strandat 898.046 kb on - strandat 898.167 kb on - strandat 898.228 kb on + strandat 898.228 kb on + strandat 898.228 kb on + strandat 898.228 kb on + strandat 898.228 kb on + strandat 898.229 kb on - strandat 898.229 kb on - strandat 898.305 kb on - strandat 898.311 kb on + strandat 898.333 kb on + strandat 898.352 kb on + strandat 898.352 kb on + strandat 898.392 kb on + strandat 898.392 kb on + strandat 898.393 kb on - strandat 898.396 kb on + strandat 898.396 kb on + strandat 898.396 kb on + strandat 898.396 kb on + strandat 898.397 kb on - strandat 898.418 kb on + strandat 898.418 kb on + strandat 898.419 kb on - strandat 898.528 kb on + strandat 898.528 kb on + strandat 898.571 kb on + strand, within AO353_04190

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Per-strain Table

Position Strand Gene LocusTag Fraction Gentamicin 0.006 mg/ml
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896,364 + AO353_04180 0.45 +0.1
896,364 + AO353_04180 0.45 +0.4
896,364 + AO353_04180 0.45 +1.1
896,364 + AO353_04180 0.45 +0.7
896,365 - AO353_04180 0.45 +0.7
896,469 + AO353_04180 0.52 +2.1
896,470 - AO353_04180 0.52 +0.4
896,470 - AO353_04180 0.52 -0.5
896,517 - AO353_04180 0.55 -0.4
896,517 - AO353_04180 0.55 -1.5
896,574 + AO353_04180 0.59 +0.1
896,575 - AO353_04180 0.59 -0.7
896,575 - AO353_04180 0.59 +1.1
896,667 + AO353_04180 0.65 +0.4
896,667 + AO353_04180 0.65 -1.5
896,667 + AO353_04180 0.65 -1.2
896,668 - AO353_04180 0.65 -1.0
896,668 - AO353_04180 0.65 +0.8
896,668 - AO353_04180 0.65 +0.7
896,668 - AO353_04180 0.65 +2.3
896,703 + AO353_04180 0.68 +0.5
896,703 + AO353_04180 0.68 -0.3
896,703 + AO353_04180 0.68 -0.1
896,703 + AO353_04180 0.68 +0.7
896,704 - AO353_04180 0.68 +0.1
896,704 - AO353_04180 0.68 -0.5
896,789 - AO353_04180 0.73 -0.5
896,789 - AO353_04180 0.73 +1.3
896,848 + AO353_04180 0.77 +1.1
896,848 + AO353_04180 0.77 +1.1
896,849 - AO353_04180 0.77 +0.8
896,899 + AO353_04180 0.81 -0.5
896,900 - AO353_04180 0.81 -0.3
897,009 + AO353_04180 0.88 +0.5
897,009 + +1.1
897,009 + AO353_04180 0.88 +1.6
897,123 + -1.1
897,123 + -0.5
897,195 + -0.9
897,196 - +0.4
897,196 - +0.1
897,212 + +0.1
897,212 + +0.4
897,212 + +0.5
897,212 + -0.2
897,213 - -1.5
897,213 - +0.8
897,213 - +0.7
897,213 - -0.5
897,216 + -1.7
897,216 + +0.1
897,216 + +0.4
897,216 + -2.6
897,217 - +1.7
897,217 - -1.2
897,217 - +0.2
897,217 - +1.6
897,217 - +1.5
897,217 - +0.5
897,217 - +0.1
897,217 - -0.5
897,224 - +1.5
897,238 + -0.1
897,284 - +1.3
897,284 - -0.9
897,338 + +0.3
897,366 + AO353_04185 0.11 +0.1
897,366 + AO353_04185 0.11 -2.2
897,366 + AO353_04185 0.11 -0.3
897,366 + AO353_04185 0.11 +1.6
897,366 + AO353_04185 0.11 -0.9
897,366 + AO353_04185 0.11 +0.9
897,366 + AO353_04185 0.11 -1.7
897,367 - AO353_04185 0.11 +0.4
897,367 - AO353_04185 0.11 -0.5
897,367 - AO353_04185 0.11 +0.1
897,367 - AO353_04185 0.11 +0.7
897,376 + AO353_04185 0.12 +1.1
897,376 + AO353_04185 0.12 +2.1
897,377 - AO353_04185 0.12 +0.8
897,377 - AO353_04185 0.12 +3.7
897,377 - AO353_04185 0.12 +1.1
897,400 + AO353_04185 0.15 -0.0
897,401 - AO353_04185 0.15 +0.8
897,455 + AO353_04185 0.23 +2.2
897,482 + AO353_04185 0.26 +1.1
897,482 + AO353_04185 0.26 +0.3
897,647 - AO353_04185 0.48 +0.8
897,846 + AO353_04185 0.74 +0.1
897,847 - AO353_04185 0.74 +1.4
897,847 - AO353_04185 0.74 +0.5
898,045 + -0.9
898,045 + +0.2
898,045 + +1.1
898,045 + -0.5
898,045 + +0.1
898,045 + +1.1
898,045 + +0.2
898,045 + -0.6
898,045 + +1.3
898,045 + -1.9
898,045 + -0.4
898,046 - +1.5
898,046 - -0.1
898,046 - -0.8
898,046 - +1.4
898,046 - +1.3
898,167 - +1.2
898,228 + -1.1
898,228 + +0.3
898,228 + +1.1
898,228 + +0.5
898,228 + +0.9
898,229 - -0.3
898,229 - +0.4
898,305 - -1.5
898,311 + -1.9
898,333 + +0.5
898,352 + -0.5
898,352 + -2.5
898,392 + -1.2
898,392 + -2.1
898,393 - -3.2
898,396 + -1.5
898,396 + -1.2
898,396 + -1.5
898,396 + -1.7
898,397 - -1.2
898,418 + -1.7
898,418 + -0.5
898,419 - -1.5
898,528 + +0.1
898,528 + -1.2
898,571 + AO353_04190 0.13 -2.9

Or see this region's nucleotide sequence