Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_03775

Experiment: Gentamicin 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_03765 and AO353_03770 are separated by 127 nucleotidesAO353_03770 and AO353_03775 are separated by 245 nucleotidesAO353_03775 and AO353_03780 are separated by 135 nucleotidesAO353_03780 and AO353_03785 are separated by 28 nucleotides AO353_03765: AO353_03765 - hypothetical protein, at 804,592 to 804,966 _03765 AO353_03770: AO353_03770 - hypothetical protein, at 805,094 to 805,393 _03770 AO353_03775: AO353_03775 - pyruvate kinase, at 805,639 to 807,090 _03775 AO353_03780: AO353_03780 - enoyl-CoA hydratase, at 807,226 to 807,975 _03780 AO353_03785: AO353_03785 - hypothetical protein, at 808,004 to 808,939 _03785 Position (kb) 805 806 807 808Strain fitness (log2 ratio) -2 -1 0 1 2 3at 804.687 kb on - strand, within AO353_03765at 804.722 kb on + strand, within AO353_03765at 804.722 kb on + strand, within AO353_03765at 804.722 kb on + strand, within AO353_03765at 804.722 kb on + strand, within AO353_03765at 804.722 kb on + strand, within AO353_03765at 804.722 kb on + strand, within AO353_03765at 804.723 kb on - strand, within AO353_03765at 804.723 kb on - strand, within AO353_03765at 804.743 kb on + strand, within AO353_03765at 804.743 kb on + strand, within AO353_03765at 804.743 kb on + strand, within AO353_03765at 804.743 kb on + strand, within AO353_03765at 804.743 kb on + strand, within AO353_03765at 804.744 kb on - strand, within AO353_03765at 804.744 kb on - strand, within AO353_03765at 804.744 kb on - strand, within AO353_03765at 804.744 kb on - strand, within AO353_03765at 804.796 kb on + strand, within AO353_03765at 804.796 kb on + strand, within AO353_03765at 804.796 kb on + strand, within AO353_03765at 804.796 kb on + strand, within AO353_03765at 804.796 kb on + strand, within AO353_03765at 804.796 kb on + strand, within AO353_03765at 804.796 kb on + strandat 804.796 kb on + strand, within AO353_03765at 804.796 kb on + strand, within AO353_03765at 804.796 kb on + strand, within AO353_03765at 804.796 kb on + strand, within AO353_03765at 804.796 kb on + strand, within AO353_03765at 804.796 kb on + strand, within AO353_03765at 804.796 kb on + strand, within AO353_03765at 804.796 kb on + strand, within AO353_03765at 804.796 kb on + strand, within AO353_03765at 804.797 kb on - strand, within AO353_03765at 804.797 kb on - strand, within AO353_03765at 804.797 kb on - strand, within AO353_03765at 804.797 kb on - strand, within AO353_03765at 804.797 kb on - strand, within AO353_03765at 804.797 kb on - strand, within AO353_03765at 804.797 kb on - strand, within AO353_03765at 804.797 kb on - strand, within AO353_03765at 804.797 kb on - strand, within AO353_03765at 804.797 kb on - strand, within AO353_03765at 804.797 kb on - strand, within AO353_03765at 804.797 kb on - strand, within AO353_03765at 804.797 kb on - strand, within AO353_03765at 804.798 kb on + strand, within AO353_03765at 804.798 kb on + strand, within AO353_03765at 804.798 kb on + strand, within AO353_03765at 804.798 kb on + strand, within AO353_03765at 804.798 kb on + strand, within AO353_03765at 804.798 kb on + strand, within AO353_03765at 804.798 kb on + strand, within AO353_03765at 804.799 kb on - strand, within AO353_03765at 804.799 kb on - strand, within AO353_03765at 804.799 kb on - strand, within AO353_03765at 804.799 kb on - strand, within AO353_03765at 804.799 kb on - strand, within AO353_03765at 804.799 kb on - strand, within AO353_03765at 804.800 kb on + strand, within AO353_03765at 804.800 kb on + strand, within AO353_03765at 804.801 kb on - strand, within AO353_03765at 804.801 kb on - strand, within AO353_03765at 804.801 kb on - strand, within AO353_03765at 804.872 kb on + strand, within AO353_03765at 804.872 kb on + strand, within AO353_03765at 805.077 kb on - strandat 805.168 kb on + strand, within AO353_03770at 805.168 kb on + strand, within AO353_03770at 805.168 kb on + strand, within AO353_03770at 805.169 kb on - strand, within AO353_03770at 805.169 kb on - strand, within AO353_03770at 805.169 kb on - strand, within AO353_03770at 805.169 kb on - strand, within AO353_03770at 805.276 kb on + strand, within AO353_03770at 805.277 kb on - strand, within AO353_03770at 805.277 kb on - strand, within AO353_03770at 805.277 kb on - strand, within AO353_03770at 805.277 kb on - strand, within AO353_03770at 805.280 kb on - strand, within AO353_03770at 805.280 kb on - strand, within AO353_03770at 805.367 kb on - strandat 805.466 kb on + strandat 805.466 kb on + strandat 805.466 kb on + strandat 805.466 kb on + strandat 805.467 kb on - strandat 805.467 kb on - strandat 805.473 kb on + strandat 805.506 kb on + strandat 805.507 kb on - strandat 805.547 kb on - strandat 805.566 kb on - strandat 805.566 kb on - strandat 805.585 kb on + strandat 805.585 kb on + strandat 805.586 kb on - strandat 805.586 kb on - strandat 805.600 kb on + strandat 805.600 kb on + strandat 805.600 kb on + strandat 805.600 kb on + strandat 805.600 kb on + strandat 805.600 kb on + strandat 805.600 kb on + strandat 805.600 kb on + strandat 805.600 kb on + strandat 805.600 kb on + strandat 805.600 kb on + strandat 805.600 kb on + strandat 805.601 kb on - strandat 805.601 kb on - strandat 805.601 kb on - strandat 805.601 kb on - strandat 805.601 kb on - strandat 805.601 kb on - strandat 805.603 kb on + strandat 805.603 kb on + strandat 805.604 kb on - strandat 805.604 kb on - strandat 805.604 kb on - strandat 805.604 kb on - strandat 805.604 kb on - strandat 805.604 kb on - strandat 805.604 kb on - strandat 805.653 kb on + strandat 805.686 kb on + strandat 805.687 kb on - strandat 805.973 kb on - strand, within AO353_03775at 806.206 kb on + strand, within AO353_03775at 806.207 kb on - strand, within AO353_03775at 806.248 kb on + strand, within AO353_03775at 806.248 kb on + strand, within AO353_03775at 806.249 kb on - strand, within AO353_03775at 806.249 kb on - strand, within AO353_03775at 806.249 kb on - strand, within AO353_03775at 806.249 kb on - strand, within AO353_03775at 806.249 kb on - strand, within AO353_03775at 806.249 kb on - strand, within AO353_03775at 806.249 kb on - strand, within AO353_03775at 806.425 kb on - strand, within AO353_03775at 806.463 kb on + strand, within AO353_03775at 806.463 kb on + strand, within AO353_03775at 806.464 kb on - strand, within AO353_03775at 806.555 kb on + strand, within AO353_03775at 806.563 kb on + strand, within AO353_03775at 806.564 kb on - strand, within AO353_03775at 806.564 kb on - strand, within AO353_03775at 806.564 kb on - strand, within AO353_03775at 806.743 kb on + strand, within AO353_03775at 806.743 kb on + strand, within AO353_03775at 806.743 kb on + strand, within AO353_03775at 806.743 kb on + strand, within AO353_03775at 806.743 kb on + strand, within AO353_03775at 806.743 kb on + strand, within AO353_03775at 806.743 kb on + strand, within AO353_03775at 806.744 kb on - strand, within AO353_03775at 806.744 kb on - strand, within AO353_03775at 806.744 kb on - strand, within AO353_03775at 806.744 kb on - strand, within AO353_03775at 806.744 kb on - strand, within AO353_03775at 806.744 kb on - strand, within AO353_03775at 806.744 kb on - strand, within AO353_03775at 806.846 kb on - strand, within AO353_03775at 806.902 kb on + strand, within AO353_03775at 806.903 kb on - strand, within AO353_03775at 806.903 kb on - strand, within AO353_03775at 806.903 kb on - strand, within AO353_03775at 806.903 kb on - strand, within AO353_03775at 806.903 kb on - strand, within AO353_03775at 806.903 kb on - strand, within AO353_03775at 806.903 kb on - strand, within AO353_03775at 806.903 kb on - strand, within AO353_03775at 806.909 kb on + strand, within AO353_03775at 806.910 kb on - strand, within AO353_03775at 807.028 kb on + strandat 807.028 kb on + strandat 807.029 kb on - strandat 807.029 kb on - strandat 807.029 kb on - strandat 807.093 kb on - strandat 807.155 kb on + strandat 807.155 kb on + strandat 807.156 kb on - strandat 807.156 kb on - strandat 807.156 kb on - strandat 807.156 kb on - strandat 807.240 kb on + strandat 807.623 kb on + strand, within AO353_03780at 807.623 kb on + strandat 807.623 kb on + strand, within AO353_03780at 807.623 kb on + strand, within AO353_03780at 807.623 kb on + strand, within AO353_03780at 807.623 kb on + strand, within AO353_03780at 807.624 kb on - strand, within AO353_03780at 807.624 kb on - strand, within AO353_03780at 807.624 kb on - strand, within AO353_03780at 807.624 kb on - strand, within AO353_03780at 807.624 kb on - strand, within AO353_03780at 807.624 kb on - strand, within AO353_03780at 807.624 kb on - strand, within AO353_03780at 807.643 kb on + strand, within AO353_03780at 807.643 kb on + strand, within AO353_03780at 807.644 kb on - strand, within AO353_03780at 807.644 kb on - strand, within AO353_03780at 807.644 kb on - strand, within AO353_03780at 807.796 kb on - strand, within AO353_03780at 807.823 kb on + strand, within AO353_03780at 807.824 kb on - strand, within AO353_03780at 807.824 kb on - strand, within AO353_03780at 807.824 kb on - strand, within AO353_03780at 807.824 kb on - strand, within AO353_03780at 807.856 kb on + strand, within AO353_03780at 807.856 kb on + strand, within AO353_03780at 807.857 kb on - strand, within AO353_03780at 807.881 kb on + strand, within AO353_03780at 807.881 kb on + strand, within AO353_03780at 807.881 kb on + strand, within AO353_03780at 807.882 kb on - strand, within AO353_03780at 807.882 kb on - strand, within AO353_03780at 807.882 kb on - strand, within AO353_03780at 807.882 kb on - strand, within AO353_03780at 807.882 kb on - strand, within AO353_03780at 807.882 kb on - strand, within AO353_03780at 807.882 kb on - strand, within AO353_03780at 808.062 kb on + strandat 808.062 kb on + strandat 808.062 kb on + strandat 808.063 kb on - strandat 808.063 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Gentamicin 0.006 mg/ml
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804,687 - AO353_03765 0.25 -0.1
804,722 + AO353_03765 0.35 -1.3
804,722 + AO353_03765 0.35 +2.0
804,722 + AO353_03765 0.35 -1.8
804,722 + AO353_03765 0.35 +0.8
804,722 + AO353_03765 0.35 -1.0
804,722 + AO353_03765 0.35 +1.6
804,723 - AO353_03765 0.35 -1.5
804,723 - AO353_03765 0.35 -1.8
804,743 + AO353_03765 0.40 -0.7
804,743 + AO353_03765 0.40 +0.7
804,743 + AO353_03765 0.40 -0.3
804,743 + AO353_03765 0.40 -1.5
804,743 + AO353_03765 0.40 +1.0
804,744 - AO353_03765 0.41 +2.3
804,744 - AO353_03765 0.41 +0.5
804,744 - AO353_03765 0.41 +1.0
804,744 - AO353_03765 0.41 +0.3
804,796 + AO353_03765 0.54 -2.7
804,796 + AO353_03765 0.54 +0.2
804,796 + AO353_03765 0.54 -0.5
804,796 + AO353_03765 0.54 -0.1
804,796 + AO353_03765 0.54 -1.3
804,796 + AO353_03765 0.54 -1.1
804,796 + +0.5
804,796 + AO353_03765 0.54 -0.5
804,796 + AO353_03765 0.54 -0.1
804,796 + AO353_03765 0.54 +1.0
804,796 + AO353_03765 0.54 -0.5
804,796 + AO353_03765 0.54 +0.1
804,796 + AO353_03765 0.54 -0.3
804,796 + AO353_03765 0.54 -0.4
804,796 + AO353_03765 0.54 -1.3
804,796 + AO353_03765 0.54 -1.7
804,797 - AO353_03765 0.55 +0.5
804,797 - AO353_03765 0.55 -0.5
804,797 - AO353_03765 0.55 -0.2
804,797 - AO353_03765 0.55 -1.5
804,797 - AO353_03765 0.55 -1.1
804,797 - AO353_03765 0.55 -2.3
804,797 - AO353_03765 0.55 +1.0
804,797 - AO353_03765 0.55 -1.0
804,797 - AO353_03765 0.55 -0.4
804,797 - AO353_03765 0.55 -0.7
804,797 - AO353_03765 0.55 +0.6
804,797 - AO353_03765 0.55 +1.5
804,797 - AO353_03765 0.55 +0.2
804,798 + AO353_03765 0.55 +1.0
804,798 + AO353_03765 0.55 -0.5
804,798 + AO353_03765 0.55 -1.0
804,798 + AO353_03765 0.55 -1.3
804,798 + AO353_03765 0.55 -1.0
804,798 + AO353_03765 0.55 -2.0
804,798 + AO353_03765 0.55 +0.0
804,799 - AO353_03765 0.55 -0.0
804,799 - AO353_03765 0.55 -1.0
804,799 - AO353_03765 0.55 -0.5
804,799 - AO353_03765 0.55 -1.3
804,799 - AO353_03765 0.55 +0.3
804,799 - AO353_03765 0.55 +0.3
804,800 + AO353_03765 0.55 -1.1
804,800 + AO353_03765 0.55 +1.0
804,801 - AO353_03765 0.56 +1.0
804,801 - AO353_03765 0.56 -1.1
804,801 - AO353_03765 0.56 +0.6
804,872 + AO353_03765 0.75 -0.5
804,872 + AO353_03765 0.75 +0.0
805,077 - -0.4
805,168 + AO353_03770 0.25 -0.4
805,168 + AO353_03770 0.25 +0.8
805,168 + AO353_03770 0.25 -0.5
805,169 - AO353_03770 0.25 -0.5
805,169 - AO353_03770 0.25 +0.0
805,169 - AO353_03770 0.25 -2.7
805,169 - AO353_03770 0.25 -2.1
805,276 + AO353_03770 0.61 -0.3
805,277 - AO353_03770 0.61 +2.0
805,277 - AO353_03770 0.61 -1.5
805,277 - AO353_03770 0.61 -1.2
805,277 - AO353_03770 0.61 -0.2
805,280 - AO353_03770 0.62 -0.8
805,280 - AO353_03770 0.62 +2.0
805,367 - -0.8
805,466 + +0.9
805,466 + +0.3
805,466 + +1.0
805,466 + +0.7
805,467 - -2.1
805,467 - -1.3
805,473 + +0.0
805,506 + -0.3
805,507 - -2.0
805,547 - -1.3
805,566 - -0.1
805,566 - +0.0
805,585 + -2.0
805,585 + -0.5
805,586 - -1.5
805,586 - -0.5
805,600 + -0.4
805,600 + +0.5
805,600 + -0.1
805,600 + +1.0
805,600 + +0.5
805,600 + +0.2
805,600 + -1.4
805,600 + +0.2
805,600 + -1.0
805,600 + -1.3
805,600 + +0.0
805,600 + -0.1
805,601 - -0.5
805,601 - +1.0
805,601 - +0.0
805,601 - -1.3
805,601 - -1.3
805,601 - -1.0
805,603 + +0.5
805,603 + -1.4
805,604 - +1.0
805,604 - +1.0
805,604 - -1.0
805,604 - -0.3
805,604 - +0.9
805,604 - +0.0
805,604 - -1.3
805,653 + -2.0
805,686 + +3.5
805,687 - -1.0
805,973 - AO353_03775 0.23 -1.0
806,206 + AO353_03775 0.39 -2.0
806,207 - AO353_03775 0.39 -2.1
806,248 + AO353_03775 0.42 +0.6
806,248 + AO353_03775 0.42 -0.5
806,249 - AO353_03775 0.42 -1.3
806,249 - AO353_03775 0.42 +0.3
806,249 - AO353_03775 0.42 -1.3
806,249 - AO353_03775 0.42 -0.1
806,249 - AO353_03775 0.42 -0.8
806,249 - AO353_03775 0.42 +0.6
806,249 - AO353_03775 0.42 -0.3
806,425 - AO353_03775 0.54 -1.7
806,463 + AO353_03775 0.57 -1.8
806,463 + AO353_03775 0.57 -1.3
806,464 - AO353_03775 0.57 -1.5
806,555 + AO353_03775 0.63 -2.0
806,563 + AO353_03775 0.64 -1.7
806,564 - AO353_03775 0.64 -1.2
806,564 - AO353_03775 0.64 +2.6
806,564 - AO353_03775 0.64 -2.1
806,743 + AO353_03775 0.76 -2.0
806,743 + AO353_03775 0.76 -1.0
806,743 + AO353_03775 0.76 -1.1
806,743 + AO353_03775 0.76 -2.4
806,743 + AO353_03775 0.76 +0.0
806,743 + AO353_03775 0.76 -1.5
806,743 + AO353_03775 0.76 -1.1
806,744 - AO353_03775 0.76 -1.0
806,744 - AO353_03775 0.76 -2.1
806,744 - AO353_03775 0.76 +2.0
806,744 - AO353_03775 0.76 -1.2
806,744 - AO353_03775 0.76 -2.0
806,744 - AO353_03775 0.76 -1.1
806,744 - AO353_03775 0.76 -1.5
806,846 - AO353_03775 0.83 -0.7
806,902 + AO353_03775 0.87 -2.2
806,903 - AO353_03775 0.87 -1.5
806,903 - AO353_03775 0.87 +2.0
806,903 - AO353_03775 0.87 +1.0
806,903 - AO353_03775 0.87 +1.4
806,903 - AO353_03775 0.87 -0.5
806,903 - AO353_03775 0.87 +0.3
806,903 - AO353_03775 0.87 -1.5
806,903 - AO353_03775 0.87 -1.3
806,909 + AO353_03775 0.87 -1.0
806,910 - AO353_03775 0.88 -0.3
807,028 + -2.5
807,028 + -1.3
807,029 - +0.3
807,029 - +0.6
807,029 - -1.1
807,093 - +0.6
807,155 + +0.9
807,155 + +0.2
807,156 - -0.7
807,156 - -0.7
807,156 - -0.8
807,156 - -0.5
807,240 + +0.5
807,623 + AO353_03780 0.53 -0.9
807,623 + -1.3
807,623 + AO353_03780 0.53 -0.9
807,623 + AO353_03780 0.53 -0.5
807,623 + AO353_03780 0.53 +1.6
807,623 + AO353_03780 0.53 +1.1
807,624 - AO353_03780 0.53 +0.2
807,624 - AO353_03780 0.53 +0.8
807,624 - AO353_03780 0.53 +0.2
807,624 - AO353_03780 0.53 +0.5
807,624 - AO353_03780 0.53 +0.1
807,624 - AO353_03780 0.53 -0.7
807,624 - AO353_03780 0.53 +0.5
807,643 + AO353_03780 0.56 +0.7
807,643 + AO353_03780 0.56 +1.1
807,644 - AO353_03780 0.56 +0.5
807,644 - AO353_03780 0.56 -0.1
807,644 - AO353_03780 0.56 -1.2
807,796 - AO353_03780 0.76 -1.4
807,823 + AO353_03780 0.80 -1.8
807,824 - AO353_03780 0.80 +1.1
807,824 - AO353_03780 0.80 +0.8
807,824 - AO353_03780 0.80 -0.3
807,824 - AO353_03780 0.80 -1.3
807,856 + AO353_03780 0.84 -1.0
807,856 + AO353_03780 0.84 -0.5
807,857 - AO353_03780 0.84 +0.2
807,881 + AO353_03780 0.87 -1.8
807,881 + AO353_03780 0.87 -0.8
807,881 + AO353_03780 0.87 +0.1
807,882 - AO353_03780 0.87 +0.7
807,882 - AO353_03780 0.87 -0.5
807,882 - AO353_03780 0.87 +0.7
807,882 - AO353_03780 0.87 -1.4
807,882 - AO353_03780 0.87 -0.9
807,882 - AO353_03780 0.87 +0.2
807,882 - AO353_03780 0.87 -0.5
808,062 + +0.6
808,062 + -0.9
808,062 + -1.1
808,063 - +0.5
808,063 - -0.5

Or see this region's nucleotide sequence