Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_02615

Experiment: Gentamicin 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_02605 and AO353_02610 overlap by 4 nucleotidesAO353_02610 and AO353_02615 are separated by 12 nucleotidesAO353_02615 and AO353_02620 overlap by 4 nucleotidesAO353_02620 and AO353_02625 overlap by 8 nucleotides AO353_02605: AO353_02605 - nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase, at 555,778 to 556,833 _02605 AO353_02610: AO353_02610 - adenosylcobinamide kinase, at 556,830 to 557,351 _02610 AO353_02615: AO353_02615 - cobyric acid synthase, at 557,364 to 558,815 _02615 AO353_02620: AO353_02620 - threonine-phosphate decarboxylase, at 558,812 to 559,804 _02620 AO353_02625: AO353_02625 - cobalamin biosynthesis protein CobD, at 559,797 to 560,705 _02625 Position (kb) 557 558 559Strain fitness (log2 ratio) -2 -1 0 1 2at 556.378 kb on + strand, within AO353_02605at 556.379 kb on - strand, within AO353_02605at 556.379 kb on - strand, within AO353_02605at 556.833 kb on + strandat 556.833 kb on + strandat 556.833 kb on + strandat 556.834 kb on - strandat 556.841 kb on + strandat 556.841 kb on + strandat 556.841 kb on + strandat 556.841 kb on + strandat 556.842 kb on - strandat 556.842 kb on - strandat 556.842 kb on - strandat 556.936 kb on + strand, within AO353_02610at 556.937 kb on - strand, within AO353_02610at 556.937 kb on - strand, within AO353_02610at 556.937 kb on - strand, within AO353_02610at 556.937 kb on - strand, within AO353_02610at 557.115 kb on + strand, within AO353_02610at 557.116 kb on - strand, within AO353_02610at 557.116 kb on - strand, within AO353_02610at 557.263 kb on + strand, within AO353_02610at 557.263 kb on + strand, within AO353_02610at 557.263 kb on + strand, within AO353_02610at 557.263 kb on + strand, within AO353_02610at 557.263 kb on + strand, within AO353_02610at 557.263 kb on + strand, within AO353_02610at 557.263 kb on + strand, within AO353_02610at 557.263 kb on + strand, within AO353_02610at 557.263 kb on + strand, within AO353_02610at 557.263 kb on + strand, within AO353_02610at 557.263 kb on + strand, within AO353_02610at 557.263 kb on + strand, within AO353_02610at 557.263 kb on + strand, within AO353_02610at 557.264 kb on - strand, within AO353_02610at 557.264 kb on - strand, within AO353_02610at 557.264 kb on - strand, within AO353_02610at 557.264 kb on - strand, within AO353_02610at 557.264 kb on - strand, within AO353_02610at 557.264 kb on - strand, within AO353_02610at 557.264 kb on - strand, within AO353_02610at 557.264 kb on - strand, within AO353_02610at 557.316 kb on - strandat 557.389 kb on + strandat 557.389 kb on + strandat 557.389 kb on + strandat 557.472 kb on + strandat 557.472 kb on + strandat 557.473 kb on - strandat 557.473 kb on - strandat 557.543 kb on - strand, within AO353_02615at 557.543 kb on - strand, within AO353_02615at 557.543 kb on - strand, within AO353_02615at 557.657 kb on - strand, within AO353_02615at 557.759 kb on + strand, within AO353_02615at 557.759 kb on + strand, within AO353_02615at 557.832 kb on + strand, within AO353_02615at 557.832 kb on + strand, within AO353_02615at 557.832 kb on + strand, within AO353_02615at 557.832 kb on + strand, within AO353_02615at 557.832 kb on + strand, within AO353_02615at 557.832 kb on + strand, within AO353_02615at 557.832 kb on + strand, within AO353_02615at 557.833 kb on - strand, within AO353_02615at 557.833 kb on - strand, within AO353_02615at 557.833 kb on - strand, within AO353_02615at 557.833 kb on - strand, within AO353_02615at 557.833 kb on - strand, within AO353_02615at 557.833 kb on - strand, within AO353_02615at 557.833 kb on - strand, within AO353_02615at 557.833 kb on - strand, within AO353_02615at 557.833 kb on - strand, within AO353_02615at 557.871 kb on - strand, within AO353_02615at 557.902 kb on + strand, within AO353_02615at 557.902 kb on + strand, within AO353_02615at 557.902 kb on + strand, within AO353_02615at 557.902 kb on + strand, within AO353_02615at 557.903 kb on - strand, within AO353_02615at 557.903 kb on - strand, within AO353_02615at 557.903 kb on - strand, within AO353_02615at 557.903 kb on - strand, within AO353_02615at 558.142 kb on + strand, within AO353_02615at 558.142 kb on + strand, within AO353_02615at 558.142 kb on + strand, within AO353_02615at 558.142 kb on + strand, within AO353_02615at 558.143 kb on - strand, within AO353_02615at 558.143 kb on - strand, within AO353_02615at 558.306 kb on + strand, within AO353_02615at 558.500 kb on - strand, within AO353_02615at 558.500 kb on - strand, within AO353_02615at 558.500 kb on - strand, within AO353_02615at 558.572 kb on + strand, within AO353_02615at 558.831 kb on + strandat 558.832 kb on - strandat 559.272 kb on + strand, within AO353_02620at 559.272 kb on + strand, within AO353_02620at 559.272 kb on + strand, within AO353_02620at 559.273 kb on - strand, within AO353_02620at 559.273 kb on - strand, within AO353_02620at 559.273 kb on - strand, within AO353_02620at 559.273 kb on - strand, within AO353_02620at 559.273 kb on - strand, within AO353_02620at 559.273 kb on - strand, within AO353_02620at 559.482 kb on + strand, within AO353_02620at 559.518 kb on + strand, within AO353_02620at 559.519 kb on - strand, within AO353_02620at 559.620 kb on + strand, within AO353_02620at 559.620 kb on + strand, within AO353_02620at 559.620 kb on + strand, within AO353_02620at 559.620 kb on + strand, within AO353_02620at 559.621 kb on - strand, within AO353_02620at 559.621 kb on - strand, within AO353_02620at 559.621 kb on - strand, within AO353_02620at 559.621 kb on - strand, within AO353_02620at 559.621 kb on - strand, within AO353_02620at 559.623 kb on + strand, within AO353_02620at 559.804 kb on + strandat 559.804 kb on + strandat 559.804 kb on + strandat 559.804 kb on + strandat 559.804 kb on + strandat 559.805 kb on - strandat 559.805 kb on - strandat 559.805 kb on - strandat 559.805 kb on - strandat 559.805 kb on - strandat 559.805 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Gentamicin 0.006 mg/ml
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556,378 + AO353_02605 0.57 +2.7
556,379 - AO353_02605 0.57 +0.8
556,379 - AO353_02605 0.57 -0.7
556,833 + +1.5
556,833 + +0.6
556,833 + +0.3
556,834 - +0.5
556,841 + +0.9
556,841 + +0.8
556,841 + -1.2
556,841 + +1.9
556,842 - -0.1
556,842 - -0.6
556,842 - +0.6
556,936 + AO353_02610 0.20 +0.4
556,937 - AO353_02610 0.20 -1.4
556,937 - AO353_02610 0.20 -0.2
556,937 - AO353_02610 0.20 +2.5
556,937 - AO353_02610 0.20 +0.2
557,115 + AO353_02610 0.55 +1.4
557,116 - AO353_02610 0.55 +1.9
557,116 - AO353_02610 0.55 +1.9
557,263 + AO353_02610 0.83 +0.8
557,263 + AO353_02610 0.83 -0.4
557,263 + AO353_02610 0.83 -0.1
557,263 + AO353_02610 0.83 +2.5
557,263 + AO353_02610 0.83 +0.1
557,263 + AO353_02610 0.83 -1.0
557,263 + AO353_02610 0.83 -0.4
557,263 + AO353_02610 0.83 +1.2
557,263 + AO353_02610 0.83 -1.4
557,263 + AO353_02610 0.83 -0.5
557,263 + AO353_02610 0.83 +1.9
557,263 + AO353_02610 0.83 +1.4
557,263 + AO353_02610 0.83 +0.7
557,264 - AO353_02610 0.83 +0.1
557,264 - AO353_02610 0.83 +0.3
557,264 - AO353_02610 0.83 +2.7
557,264 - AO353_02610 0.83 +1.9
557,264 - AO353_02610 0.83 -0.5
557,264 - AO353_02610 0.83 -1.9
557,264 - AO353_02610 0.83 -0.1
557,264 - AO353_02610 0.83 -0.1
557,316 - +1.2
557,389 + +0.5
557,389 + -1.5
557,389 + +0.9
557,472 + +0.8
557,472 + -0.3
557,473 - -2.2
557,473 - +1.5
557,543 - AO353_02615 0.12 -1.4
557,543 - AO353_02615 0.12 +1.3
557,543 - AO353_02615 0.12 +0.2
557,657 - AO353_02615 0.20 -0.9
557,759 + AO353_02615 0.27 -1.4
557,759 + AO353_02615 0.27 -0.8
557,832 + AO353_02615 0.32 +0.9
557,832 + AO353_02615 0.32 +1.3
557,832 + AO353_02615 0.32 +0.5
557,832 + AO353_02615 0.32 -1.9
557,832 + AO353_02615 0.32 +0.9
557,832 + AO353_02615 0.32 +1.2
557,832 + AO353_02615 0.32 +1.5
557,833 - AO353_02615 0.32 -0.3
557,833 - AO353_02615 0.32 -0.7
557,833 - AO353_02615 0.32 +1.5
557,833 - AO353_02615 0.32 +0.5
557,833 - AO353_02615 0.32 +0.6
557,833 - AO353_02615 0.32 +0.8
557,833 - AO353_02615 0.32 +0.4
557,833 - AO353_02615 0.32 +0.4
557,833 - AO353_02615 0.32 +1.7
557,871 - AO353_02615 0.35 +0.4
557,902 + AO353_02615 0.37 -0.1
557,902 + AO353_02615 0.37 -1.7
557,902 + AO353_02615 0.37 +1.2
557,902 + AO353_02615 0.37 +1.7
557,903 - AO353_02615 0.37 -0.7
557,903 - AO353_02615 0.37 +0.9
557,903 - AO353_02615 0.37 -0.3
557,903 - AO353_02615 0.37 +0.9
558,142 + AO353_02615 0.54 +1.1
558,142 + AO353_02615 0.54 +0.3
558,142 + AO353_02615 0.54 +0.9
558,142 + AO353_02615 0.54 +0.5
558,143 - AO353_02615 0.54 +1.4
558,143 - AO353_02615 0.54 +0.3
558,306 + AO353_02615 0.65 +0.9
558,500 - AO353_02615 0.78 +0.9
558,500 - AO353_02615 0.78 -0.3
558,500 - AO353_02615 0.78 -1.1
558,572 + AO353_02615 0.83 +1.2
558,831 + +1.9
558,832 - +1.9
559,272 + AO353_02620 0.46 +0.7
559,272 + AO353_02620 0.46 +0.5
559,272 + AO353_02620 0.46 -0.1
559,273 - AO353_02620 0.46 -0.7
559,273 - AO353_02620 0.46 +1.9
559,273 - AO353_02620 0.46 +0.6
559,273 - AO353_02620 0.46 +0.5
559,273 - AO353_02620 0.46 -0.4
559,273 - AO353_02620 0.46 -0.2
559,482 + AO353_02620 0.67 -1.0
559,518 + AO353_02620 0.71 -0.4
559,519 - AO353_02620 0.71 +0.9
559,620 + AO353_02620 0.81 +0.8
559,620 + AO353_02620 0.81 +0.1
559,620 + AO353_02620 0.81 +1.1
559,620 + AO353_02620 0.81 +1.2
559,621 - AO353_02620 0.81 +1.6
559,621 - AO353_02620 0.81 -0.2
559,621 - AO353_02620 0.81 +0.5
559,621 - AO353_02620 0.81 +0.1
559,621 - AO353_02620 0.81 +0.7
559,623 + AO353_02620 0.82 +0.2
559,804 + -1.4
559,804 + +0.9
559,804 + +0.3
559,804 + -0.7
559,804 + -1.9
559,805 - -0.5
559,805 - -0.8
559,805 - +0.3
559,805 - +1.2
559,805 - -0.7
559,805 - +1.2

Or see this region's nucleotide sequence